ID   EF370403; SV 1; linear; genomic RNA; STD; VRL; 1689 BP.
XX
AC   EF370403;
XX
DT   14-FEB-2007 (Rel. 90, Created)
DT   14-FEB-2007 (Rel. 90, Last updated, Version 1)
XX
DE   Tomato ringspot virus isolate S-1 coat protein gene, partial cds.
XX
KW   .
XX
OS   Tomato ringspot virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus.
XX
RN   [1]
RP   1-1689
RA   Pinkerton J.N., Kraus J.E., Martin R.R., Schreiner R.P.;
RT   "Epidemiology of Xiphinema americanum and Tomato Ringspot Virus on red
RT   raspberry, Rubus idaeus";
RL   Unpublished.
XX
RN   [2]
RP   1-1689
RA   Kraus J.E., Pinkerton J.N., Martin R.R.;
RT   ;
RL   Submitted (17-JAN-2007) to the INSDC.
RL   USDA/ARS, Horticultural Crops Research Laboratory, 3420 NW Orchard Ave.,
RL   Corvallis, OR 97330-5098, USA
XX
DR   MD5; 70676a491e83cabb304bdedd521f3dd8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1689
FT                   /organism="Tomato ringspot virus"
FT                   /host="Rubus idaeus"
FT                   /isolate="S-1"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Clark County, WA"
FT                   /db_xref="taxon:12280"
FT   CDS             <1..1689
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:A3FEN3"
FT                   /db_xref="InterPro:IPR005054"
FT                   /db_xref="InterPro:IPR005305"
FT                   /db_xref="InterPro:IPR005306"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:A3FEN3"
FT                   /protein_id="ABN45886.1"
FT                   /translation="GGAWQEGTEAAFLGKVTCAKDAKGGTLLHTLDIISACKTQSLLRY
FT                   KEWQRQGFLHGKLRLRCFIPTNIFCGHSMMCSLDAFGRYDPNVLGASFPVKLASLLPTE
FT                   VISLADGPVVTWTFDIGRLCGHGLYYPEGAYSKPKIYFLILSDNDVPAEADWQFTYQLL
FT                   FEDYSFSNSFGAVPFITLPHKFDRLDIGYWRGPTEIDLTSTPAPNAYRLLFGLSTAISG
FT                   GMSTLSSNQALLRFFQGSNGTLHGRIKKIGTALTTCSLLLSLRHRDADLTLETAYQRPH
FT                   FILSGGQGAFSLPISTPHAATSFLEDMLRLEIFAIAGPFSPQNNKAKYQFMCYFDHIEL
FT                   VEGVPRTIAGEQQFNWCSFRNFKVDDWKFEWPARLPDIIDDKSEVLLKQHPLSLLISST
FT                   GFFTGRAIFVFQWGLNATAGNMKGSFSARLAFGKGVEEIEQTATVQPLLGVCEARIPVE
FT                   FKTYTGFTTSGPPGSMEPYIYVRLTQAKLVDRLSVNVILQEGFSFYGPSVKHFKKEIGT
FT                   TSATLGTQNPTGRPPENVDVGGPGSQYAAALQAAQQAGKNPFGRG"
XX
SQ   Sequence 1689 BP; 403 A; 350 C; 413 G; 523 T; 0 other;
     ggtggtgctt ggcaggaggg aactgaagct gcttttttag gcaaggttac ttgtgccaag        60
     gatgctaaag gaggaactct cttgcacacg ctggatatta taagcgcttg taagactcag       120
     agtttgctta gatataagga atggcagcgc cagggttttc tccatgggaa acttcggttg       180
     cgctgtttta tccctactaa cattttttgt ggacattcga tgatgtgctc tctggatgca       240
     tttggtcgtt atgatccgaa tgtgcttggc gctagttttc cggtgaagtt ggcaagttta       300
     cttccaactg aggttattag tctcgctgat ggacccgtgg tcacttggac gtttgatatt       360
     ggacgtttat gtgggcatgg gctctattat cctgagggcg cttattcaaa gcccaaaatc       420
     tattttttaa ttctttcgga caatgatgtc ccagcagaag ctgattggca atttacttat       480
     cagcttctgt ttgaggatta ttcattttcc aattcttttg gggcggttcc ttttattacc       540
     ttaccccata agtttgatag attagatata ggttattggc gcgggccaac cgaaattgac       600
     ttaacttcaa cccccgctcc caatgcctat agattacttt ttggcttgtc cactgccatt       660
     agtggtggca tgtcaactct aagttcgaat caagccttgc tgagattttt ccaaggttcg       720
     aacggtacgc tgcatgggcg gataaagaag ataggtacag ctcttactac ctgttctctt       780
     cttctgtcct tgcgacatag agatgcagat ctcacgctag agactgccta tcaaaggccc       840
     cactttattt tgtctggtgg acaaggggcc ttttcactac ctatttccac tcctcatgcc       900
     gcgacttctt ttcttgaaga tatgctgcgg ctggaaatct ttgctatagc gggtccattt       960
     agcccgcaaa ataataaagc taagtaccag tttatgtgtt attttgacca catagaactg      1020
     gttgagggag tgcctaggac tatagcggga gaacagcagt tcaactggtg tagttttagg      1080
     aattttaaag ttgatgactg gaagtttgag tggccagctc gccttccaga tattattgat      1140
     gataagtctg aggtgctatt aaagcaacat cctttgtctc tacttatttc atctactggc      1200
     ttttttacgg gaagagctat ctttgttttc caatggggct tgaacgctac cgctggaaat      1260
     atgaagggtt ctttttctgc tcgtcttgcc tttggcaaag gagtggagga aattgagcaa      1320
     acagcaacag tgcagccact gcttggtgtt tgtgaagccc gtatacctgt ggagtttaaa      1380
     acttacacag gttttactac ttcgggtcct ccagggtcta tggagcctta catttacgtg      1440
     agactaacgc aagcaaaact tgttgatagg ctctctgtga atgttatttt acaggaggga      1500
     ttttctttct atggacctag tgtcaaacat ttcaagaaag aaatcggcac gactagtgct      1560
     accctaggga cgcagaatcc cacaggccgt ccaccagaga atgtagatgt aggagggcct      1620
     ggaagccagt atgcggctgc tcttcaagca gcccagcagg cggggaaaaa cccgtttgga      1680
     cgcgggtga                                                              1689
//