ID   EF362622; SV 1; linear; genomic RNA; STD; VRL; 1603 BP.
XX
AC   EF362622;
XX
DT   14-FEB-2007 (Rel. 90, Created)
DT   14-FEB-2007 (Rel. 90, Last updated, Version 1)
XX
DE   Nerine yellow stripe virus polyprotein gene, partial cds.
XX
KW   .
XX
OS   Nerine yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1603
RA   Pham K.T.K., Blom-Barnhoorn G.J., van Leeuwen P., Derks A.F.L.M.;
RT   "Molecular characterization of potyviruses causing mosaic disease of
RT   Hymenocallis in the Netherlands";
RL   Unpublished.
XX
RN   [2]
RP   1-1603
RA   Pham K.T.K., Blom-Barnhoorn G.J., van Leeuwen P., Derks A.F.L.M.;
RT   ;
RL   Submitted (15-JAN-2007) to the INSDC.
RL   Applied Plant Research, Section Flower Bulbs and Nursery Stocks, Wageningen
RL   UR, Postbus 85, 2160 AB, Lisse, The Netherlands
XX
DR   MD5; 4087cf2a8e1330031d800bd490e44dd8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1603
FT                   /organism="Nerine yellow stripe virus"
FT                   /host="Hymenocallis cultivar Sulphur Queen"
FT                   /mol_type="genomic RNA"
FT                   /country="Netherlands"
FT                   /isolation_source="diseased plant material"
FT                   /db_xref="taxon:424679"
FT   CDS             <1..1425
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains NIb and coat proteins"
FT                   /db_xref="GOA:A3F8Z6"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A3F8Z6"
FT                   /protein_id="ABN45758.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVIAMQYSLLLNGIELEQQESVCKYFANG
FT                   DDLLIAIEPTYATRLFDSFECNFKQLGLNYDFSNRVLNKEELIFMSHKGVLVDDLYIPK
FT                   LERERIVSILEWDKSSEPEQRLEAICASMIEAWGYKDLLHEIRKFYAWVLEQAPYSELA
FT                   RNGKAPYLAETALRHLYTNSEIRDEELLNYIEAFQSEVSFDEEMVDVIFQSQETVNAGT
FT                   ELARSQQAQTPVTPSQDVNVGTSGQTALIQSKMFSKKLRVMKAKGKTTLNLEHLLHYKP
FT                   IQEDLFNTKSSQQQFDNWHMKVQEAYDVDDKQMEILMNGLIVWCIENGTSSELKGTWRM
FT                   DFGDQQVEYDIQPLIQHSQPTFCQIMRHFSKIAEAYIAMRNQEERYMPRYALQRGLTDI
FT                   SLARYGFDFFDTTAATPQRAREAVMQMKAAAVRGKETRLFSLDGNISANTENTERHTVE
FT                   DVTQDMHSLLGVRGIK"
FT   3'UTR           1426..1603
XX
SQ   Sequence 1603 BP; 517 A; 256 C; 361 G; 469 T; 0 other;
     ggtaataata gtgggcagcc ttcaacggtg gtagacaata cacttatggt tgttatagcc        60
     atgcagtatt ctttactgtt gaatggtatt gagctagagc agcaagaatc tgtttgtaaa       120
     tatttcgcta atggtgatga tttgctcata gctatagaac caacatatgc aactagattg       180
     tttgatagtt ttgagtgtaa tttcaaacag ttaggtttaa actacgattt ttcaaataga       240
     gttttgaata aagaggagtt gatttttatg tctcacaaag gtgttttagt tgatgacttg       300
     tatataccaa aacttgaacg cgagcgaatt gtctcaattc ttgaatggga taaaagttca       360
     gaacccgaac aacgattgga agccatttgt gcatccatga ttgaggcatg gggttataag       420
     gatttgttgc acgaaattag aaagttttat gcttgggttc ttgaacaggc cccatattct       480
     gagctggcac gtaatggaaa agcaccttat ctggctgaaa ccgctctaag gcatttatat       540
     acaaattctg agataagaga tgaggagtta ttaaactata tcgaggcttt ccaatctgaa       600
     gttagttttg acgaggaaat ggtcgatgtg atttttcaat ctcaggaaac tgttaatgcc       660
     ggaactgaat tagctagatc gcagcaagca caaacgccag tgactccaag tcaggatgta       720
     aatgtaggga cttccggaca gactgcacta atacaatcaa aaatgttttc aaagaaactg       780
     cgagttatga aagctaaagg aaaaacaaca cttaatcttg aacatctctt gcattataag       840
     ccaattcaag aagacttgtt caatacaaaa tctagtcaac agcaatttga taattggcac       900
     atgaaagtgc aagaagcata tgatgttgac gataagcaaa tggaaattct tatgaatgga       960
     ttgattgttt ggtgcattga aaacggaact tcttctgaat tgaaaggaac atggaggatg      1020
     gattttggag atcagcaagt cgaatatgat attcaacctt tgatacaaca cagtcagcca      1080
     actttttgcc aaataatgag acattttagt aagatagctg aagcgtatat agctatgcga      1140
     aaccaagaag aacgctatat gccaaggtat gcgcttcaga ggggcctcac tgatattagt      1200
     ctagcacggt atggttttga tttctttgac acaacagcag ctactccgca acgggcacgg      1260
     gaggccgtta tgcaaatgaa agcagctgct gtgcgtggga aggaaacaag attattctca      1320
     cttgatggca atattagtgc aaacacagaa aacactgagc gacatactgt tgaggatgtc      1380
     actcaggata tgcactcact tcttggtgtg aggggtataa agtgagtaag tggggagctt      1440
     cttgtatctt atagataaat taaggtttta ttttatctat ctgtatccag gaatcctgta      1500
     gaattggcta cccgtgtggt tttgtcggtt gaagtgtgat tgtatcacct caaacaacgg      1560
     atttaattac acattcggta gggaattcta taaggagaca aaa                        1603
//