ID   EF216865; SV 1; linear; genomic RNA; STD; VRL; 2220 BP.
XX
AC   EF216865;
XX
DT   14-FEB-2007 (Rel. 90, Created)
DT   14-FEB-2007 (Rel. 90, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate YN segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2220
RA   Chen J., Wu P.;
RT   "Construction of a full-length cDNA clone of RNA1 of cucumber mosaic virus
RT   isolate Cb7";
RL   Unpublished.
XX
RN   [2]
RP   1-2220
RA   Chen J., Wu P.;
RT   ;
RL   Submitted (10-JAN-2007) to the INSDC.
RL   Institute of Bioengineering, Zhejiang Sci-Tech University, 2 Xiasha St.,
RL   Hangzhou, Zhejiang 310018, China
XX
DR   MD5; e58092718b5ea48c39c20bde0377cbc0.
DR   EuropePMC; PMC3550734; 23637513.
DR   EuropePMC; PMC3550809; 23730005.
DR   EuropePMC; PMC4188193; 25674612.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2220
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Brassica campestris subsp. chinensis (L.) Makino"
FT                   /isolate="YN"
FT                   /serotype="IB"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:12305"
FT   gene            122..961
FT                   /gene="3a"
FT   CDS             122..961
FT                   /codon_start=1
FT                   /gene="3a"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:A3F772"
FT                   /protein_id="ABN12315.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDELQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDAGELSSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVTLHNHDLPALVSFQPTYDCPMEIVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYVLTDAKINQNARSESEELNVESPPIAIGSSSASRSETFRPQVVNGL"
FT   gene            1262..1918
FT                   /gene="CP"
FT   CDS             1262..1918
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:A3F773"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:A3F773"
FT                   /protein_id="ABN12316.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADANFKVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
XX
SQ   Sequence 2220 BP; 509 A; 526 C; 536 G; 649 T; 0 other;
     gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtgtcg cgtcgtgtcg agtcgtgttg        60
     tccgcacatt tgagtcgtgc tgtccgcaca tttttctttc agtgtgttag attcccgagg       120
     catggctttc caaggtacca gtaggacttt aactcaacag tcctcagcgg ctacgtctga       180
     cgaacttcaa aagatattat ttagccctga agccattaag aagatggcta ctgagtgtga       240
     cctaggccgg catcattgga tgcgcgctga taatgctatt tcagtccggc ccctcgttcc       300
     cgaagtaacc cacggtcgta ttgcttcctt ctttaagtct ggatatgatg ctggtgaatt       360
     gagctctaaa ggatatatga gcgttcctca agtgttgtgt gctgttactc gaacagtttc       420
     caccgatgct gaaggatctt tgagaattta cctagctgat ctaggcgata aggagttatc       480
     tcccatagat ggacaatgcg ttacattaca taaccatgat ctacccgctt tagtgtcttt       540
     ccagccgacg tatgattgtc ctatggaaat tgttgggaat cgtaagcggt gttttgctgt       600
     tgttatcgaa agacatggtt atattgggta taccggcacc acagctagcg tgtgtagtaa       660
     ttggcaagca cggttttctt ctaagaataa caactacact catatcgcag ctgggaagac       720
     tctagtactg ccgttcaaca gattagctga gcaaacaaaa ccgtcagctg ttgctcgcct       780
     gttgaagtcg caattgaaca acatagaatc ttcgcaatac gttttaacgg atgcgaagat       840
     taatcagaat gcgcgcagtg agtccgagga attaaatgtt gagagccctc ccatcgcaat       900
     cgggagttct tccgcgtccc gctccgaaac cttcagaccg caggtggtta acggtcttta       960
     gtgtcttcgt tgcgtattag tatataagta tgtgtgtgtc tgtacataat actatatcta      1020
     tagtgtcctg tgtgagttga tacagtagac aactgtgacg cgaagtcgtg ttgagaagag      1080
     agcacatctg gttctagtaa acccacaaca tatctttgag gttcaattcc tctcgttccc      1140
     tgttgggccc ctttactttt tcatggatgc ttctccacga gattgcgttt cgtctactta      1200
     tcctaagagt attgtgctgt gtgttttctc ttttgtgtag tagtttgagt cgagtcgagt      1260
     catggacaaa tctgaatcaa ccagtgctgg tcgcaaccgt cgacgtcgtc cgcgtcgtgg      1320
     ttcccgctcc gcttcctcct ccgcggatgc taactttaaa gtcttgtcgc agcagctttc      1380
     gcgacttaac aagacgttag cagctggtcg tccaactatt aaccacccaa cctttgtggg      1440
     tagtgaacgc tgtaaacctg ggtacacgtt cacatctatc accctgaagc caccgaaaat      1500
     agaccgtggg tcttattatg gtaaaaggtt gttgctacct gattcagtca cggagttcga      1560
     taagaagctt gtttcgcgca ttcaaattcg agttaatcct ttgccgaaat ttgattctac      1620
     tgtgtgggtg acggtccgta aagttcctgc ctcctcggac ctatccgttg ccgctatctc      1680
     tgctatgttt gcggacggag cctcaccagt actggtttat cagtatgctg catccggcgt      1740
     tcaagccaac aacaaattgt tgtacgatct ttcggcgatg cgcgctgata ttggtgacat      1800
     gagaaagtac gccgtcctcg tgtattcaaa agacgatgcg ctcgagacgg acgagttggt      1860
     acttcatgtc gacgtcgagc accaacgcat tcccacatct ggggtgctcc cagtttgaat      1920
     ccgtgttttc ccagaaccct ccctccagtc ctgcggcggg agctgagttg gtagtattgc      1980
     tttaaactgc ctgaagtcac taaacgcttt gcggtgaacg ggttgtccat ccagcttacg      2040
     gctaaaatgg tcagtcgtgg agaaatccac gccagcagac ttacaagtct ctgaggtgcc      2100
     tttgaaacca tctcctaggt ttcttcggaa ggacttcggt ccgtgtactt ctagcacaag      2160
     atgctagttt cagggtacgg gcatcccccc actttagtgg gggcctccaa aaggagacca      2220
//