ID EF207438; SV 1; linear; genomic RNA; STD; VRL; 4172 BP. XX AC EF207438; XX DT 31-JAN-2007 (Rel. 90, Created) DT 01-NOV-2007 (Rel. 93, Last updated, Version 2) XX DE Nootka lupine vein-clearing virus, complete genome. XX KW . XX OS Nootka lupine vein clearing virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphacarmovirus. XX RN [1] RP 1-4172 RX DOI; 10.1007/s11262-007-0139-3. RX PUBMED; 17657600. RA Robertson N.L., Cote F., Pare C., Leblanc E., Bergeron M.G., Leclerc D.; RT "Complete nucleotide sequence of Nootka lupine vein-clearing virus"; RL Virus Genes 35(3):807-814(2007). XX RN [2] RP 1-4172 RA Cote F., Robertson N.L., Pare C., Leblanc E., Bergeron M.G., Leclerc D.; RT ; RL Submitted (05-JAN-2007) to the INSDC. RL Infectious Disease Research Center, University Laval, 2705 Boul. Laurier, RL Quebec, Quebec G1V-4G2, Canada XX DR MD5; 40337135e7587465a781d42ec725f220. XX FH Key Location/Qualifiers FH FT source 1..4172 FT /organism="Nootka lupine vein clearing virus" FT /host="Lupinus nootkatensis Donn" FT /isolate="Alaska" FT /mol_type="genomic RNA" FT /country="USA" FT /collected_by="Nancy L. Robertson" FT /identified_by="Nancy L. Robertson" FT /db_xref="taxon:283876" FT CDS 60..809 FT /codon_start=1 FT /product="N-terminus replicase" FT /db_xref="UniProtKB/TrEMBL:A2TJS8" FT /protein_id="ABM92359.1" FT /translation="MGVFSKLAKELVIGSGTLGVLGCCLYAAAVVRVTVGTVEFGIAAV FT NTVSDFVQSGGLSIPTVPQYPNLGYSPFQVELDQSAGKEDEGISMLEASTLEEKKEADS FT EGKMVVVSRKRKVNRHQKGQFVMDVVRKAKMHFGCTPSPTRANELAVAKYVAGLCKEQH FT LVASHAREVTEVAKALVFTPDIAEIQGTKLLNSYRAYARRVALHDAQQIDQWWLNLVKH FT PLSTNSWAEAWYTLNGAPPRAAVQFNK" FT CDS <810..2387 FT /codon_start=1 FT /product="replicase/polymerase" FT /note="read through product" FT /db_xref="GOA:A2TJS9" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A2TJS9" FT /protein_id="ABM92360.1" FT /translation="GGLFHLDGVCTKIRRGSHPSVVEVEKTNAPKLRRLYKLNTMHSGY FT QFSIHNNSYQNLRRGLIERVYYVENKQKGELQACPRPEQGVFKEMAYLRRRFVNVCGQH FT TRISTEQFVDLYQGRKRTIYQQAAESLSERPLDRKDAELRTFVKAEKFNQSKKPDPAPR FT VIQPRNPRYNVKLGLYLKKFEKHACRALDRIWGGPTVMKGYTVEEVGQHIRGAWCQYSR FT PVAIGFDMERFDQHVSVPALQFEHSLYMGCFSNDPELRELLDMQLHSFGIGLSSNGYCR FT YKTEGGRKSGDMNTGLGNCALACLITKHVLRGVPCRLINNGDDCVVVCDELDAARVMAL FT VAPGWARFGFKCIVEKPVRNFEEIVFCQMQPMFDGETWLMVRTVDVALSKDCHSTVRWD FT SVKQAKKWLRAVGMCGIRLTGGVPIMQEFYQKMVDSTESCELKNMEGLLEGTGFYILAK FT NSKRGYRAISDEARFSFYLMTGIVPDVQTALEHEIAAGKINMEIDLSAGPPEFLAEIIT FT SLVNGNRT" FT CDS 2371..2574 FT /codon_start=1 FT /product="MP1" FT /note="movement protein 1" FT /db_xref="GOA:A2TJT0" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:A2TJT0" FT /protein_id="ABM92361.1" FT /translation="MEIEHKEIKLGGKKKPRQAVGSKGRGTGKRLVAHAAVDKDAPKGN FT SGGSYVFVADTMEVRNKIVFNF" FT CDS 2471..2692 FT /codon_start=1 FT /product="MP2" FT /note="movement protein 2" FT /db_xref="GOA:A2TJT1" FT /db_xref="UniProtKB/TrEMBL:A2TJT1" FT /protein_id="ABM92362.1" FT /translation="MRLWIKMHLRVIVGVVTFLLLTRWKFAIRSFSISEILPPLITLNQ FT IITLSFLILFVNCLCRGGDTIFLDPLHR" FT CDS 2729..3766 FT /codon_start=1 FT /product="coat protein" FT /note="nucleocapsid" FT /db_xref="GOA:A2TJT2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A2TJT2" FT /protein_id="ABM92363.1" FT /translation="MTNSSAITNHPATTKAAVSGVAWAVKLRSKGWASLTTAQKRAARL FT ATGISDGPVVVVMPKRNKVKNPNNHTIEGQAGKSTNISKAEFISTVTGSTGSSPTFSSW FT RINPSDVGSFPTISCFANRFNQYQITSMAVRFSPARSFQTNGMISLAFTDDSTDPVPTS FT RQQMAGYTSMVSSEVSQNLLMKIRGDSKRRYIRDSTNENGKLVDFGRVILSVHGCDSGV FT GDLGDLYFEYTIRFSDPTFVQRDSQTSAEEEEVGPHFADFRATDTEWTATLVAPGNWVV FT SVVGSNVPDRMTIRGDGATGEVHEGGDSYSYVAVAVVRAQIQGAVVALNLTGGGKVTKV FT VVSRM" XX SQ Sequence 4172 BP; 1082 A; 905 C; 1143 G; 1042 T; 0 other; tttctggcag gactcccgag tgttagattt cgttcttcca ctattttgcg ttggctaaaa 60 tgggtgtatt ttccaaattg gctaaagagt tagtgattgg ttccggtacc ctaggtgtcc 120 ttggctgttg tctgtatgct gcagctgtag tcagagtaac cgtgggtacc gttgagttcg 180 gaattgccgc agttaacact gtcagcgatt tcgtacaaag tgggggtctc tcaataccca 240 ctgtcccaca atatccaaac ttggggtaca gcccctttca ggttgaactg gaccaatccg 300 ctgggaaaga ggatgaaggc atttctatgt tggaggcctc aaccctagag gaaaagaagg 360 aggctgatag cgaaggtaag atggttgtag tgagtcgcaa gaggaaagtt aacaggcacc 420 aaaaggggca attcgtcatg gacgtggtgc ggaaggctaa aatgcacttc gggtgcactc 480 cctcacccac cagggccaac gaactagcgg ttgccaagta tgtggccggt ctatgtaagg 540 aacaacatct ggtggcgtct cacgccaggg aggttacgga ggtggccaag gcattagtgt 600 ttactcccga catcgctgaa atacagggca cgaaactgct gaattcttac cgtgcgtacg 660 cacgtcgtgt tgccctccat gacgcccaac aaattgacca atggtggtta aatctagtga 720 aacatccact ttccacgaac agttgggcgg aagcatggta cactctgaac ggcgccccac 780 cccgggcagc ggttcagttt aataaatagg ggggtctttt ccatctcgac ggtgtgtgta 840 cgaagattcg tagggggtcg cacccgtctg tggttgaggt ggagaaaacc aacgccccta 900 aacttaggag actctacaaa ctaaacacga tgcatagtgg gtaccagttc agtatccaca 960 acaattcgta ccaaaacctc aggagaggtc tcatcgaaag agtctactac gtggaaaaca 1020 aacaaaaagg tgagttacaa gcttgtccgc gccctgagca gggtgttttc aaagagatgg 1080 cgtatctgcg tcgcaggttt gtgaatgtgt gtggtcaaca tacccggatc tccacggagc 1140 aatttgtgga tttgtatcag ggcaggaaac gcaccattta tcaacaggcc gcagaaagtc 1200 tatcagagag accactcgat cgcaaggacg ctgagttacg gacgtttgtc aaggcggaaa 1260 aatttaatca gtctaagaaa ccagacccgg ctcctagggt tatccagccg aggaacccca 1320 gatacaacgt gaagttgggc ttgtacttga agaaattcga gaaacatgct tgtcgagctc 1380 tcgaccgtat ttggggtggg cctactgtta tgaaaggata taccgtggag gaagtgggac 1440 aacatattcg gggcgcttgg tgccagtatt ccaggcccgt ggcgattggt tttgatatgg 1500 agagattcga ccaacacgtg tctgtcccag cgcttcaatt cgaacattcc ctatacatgg 1560 gctgtttttc aaatgacccg gagctgcgtg agttgcttga tatgcagctc cacagtttcg 1620 ggattggtct gagttccaat ggttactgta ggtacaaaac tgaagggggt aggaaatcgg 1680 gggatatgaa caccggtctc ggtaattgtg cactggcatg tttgattacg aaacacgtac 1740 tcagaggtgt gccttgcagg ttgatcaaca acggtgacga ctgtgtagtc gtgtgtgatg 1800 aactggatgc cgcccgtgtt atggccttgg ttgctccagg ctgggctaga ttcggcttca 1860 aatgcattgt tgagaaacct gttcggaact tcgaggaaat tgtgttttgt cagatgcagc 1920 ctatgttcga tggcgaaacc tggttgatgg tccgtacggt ggatgtggcc ctatctaaag 1980 attgtcacag tacagtgcgt tgggattcgg tcaaacaggc gaaaaagtgg ttgcgtgcag 2040 tggggatgtg tggaatcaga ttaactgggg gcgtaccgat tatgcaagaa ttttatcaga 2100 aaatggttga ttcgactgaa agttgtgagc tgaagaacat ggagggttta ttggagggga 2160 cggggtttta cattctggcc aagaacagca agcggggcta tagagcaatt agtgatgagg 2220 ctcggttttc gttttatctg atgaccggta tcgtgcccga tgtgcaaacc gcattggaac 2280 atgagattgc tgctgggaag attaatatgg aaattgacct gtctgctggc ccccctgaat 2340 tcttggcgga aatcatcacc tctctagtaa atggaaatcg aacataagga aatcaaattg 2400 ggtgggaaaa agaaaccgcg gcaagcagtt ggatcaaagg ggaggggaac tgggaaaagg 2460 ctagtagccc atgcggctgt ggataaagat gcacctaagg gtaatagtgg gggtagttac 2520 gtttttgttg ctgacacgat ggaagttcgc aataagatcg ttttcaattt ctgaaatttt 2580 gcccccgctg attactctta atcaaatcat aactctcagt ttcctcatac tctttgtgaa 2640 ctgtctttgt cgcggcggcg atacaatctt tttagatcca ttacacagat aactccaaac 2700 ttcaacacat aaaaattgac actaaagaat gacaaactcc agtgcgataa caaatcatcc 2760 agcaacaacc aaggctgccg tttctggggt agcttgggct gttaagctgc gatccaaggg 2820 ttgggcttcc ttgaccacgg ctcaaaagag ggcagcgcga ctggcgaccg gaatttctga 2880 cggtcccgtt gtagttgtta tgcccaagcg gaacaaggtc aagaacccca acaatcacac 2940 tattgaagga caagctggga aatccacgaa catatccaaa gctgaattca tctccactgt 3000 caccggatct acgggctctt ctcccacctt tagctcatgg cggatcaatc cgtctgacgt 3060 aggtagtttt cccaccatta gttgttttgc taaccggttc aatcaatacc agattaccag 3120 tatggcagtg cggttttccc cggctaggag tttccaaacc aatgggatga tctcactcgc 3180 tttcactgat gacagcaccg atccggtccc cactagcagg cagcagatgg caggttacac 3240 cagcatggtg agttctgagg tgagtcaaaa cctgttgatg aaaatccgtg gtgatagtaa 3300 gaggagatac ataagggatt ccaccaatga gaacggcaaa ttggtggatt ttggtagggt 3360 catactgtct gtacacgggt gtgatagcgg ggtgggggat cttggggacc tctactttga 3420 atacaccata cgttttagtg atcctacctt tgttcaacgg gattcccaaa ctagtgctga 3480 agaggaagaa gtcgggcctc attttgccga ttttcgtgcc actgacactg aatggactgc 3540 cactttagtc gcacccggga attgggttgt gagtgtggtt gggagcaatg ttcctgaccg 3600 catgacgatc cggggtgacg gcgcgactgg ggaggtacac gaaggtggtg actcttacag 3660 ttacgttgcg gtcgcagtcg tgcgagcgca gatacaaggg gccgtggtgg ccctcaacct 3720 tactggaggc ggaaaagtta ctaaggttgt tgtgtcacgc atgtgattca acgcctcggt 3780 ccgaattccg aaattccaca cacactgttg agattcattg tgtgggttga ctaacgtgca 3840 tgagtgagat agcagactcc ctgactattc ctagggcacc catcctcttc ttgatgggat 3900 aagctaggta aggggacaga acactgcaga agctttaatt tggccgccac caaacatgca 3960 tggaataaaa tgtgtcaacc ctgattgatc tacacagtgt gtcgggaacg tacgattcgc 4020 gcttaccaga gggaaacacc acaagtccag gggggtctgg acgataataa ccattgaagc 4080 agtaaagatc cgaaaggtga gggctctgtt ctagatggta accctgtttt taaattagtc 4140 ggagaaactt ccacagagtt tttccggcgc cc 4172 //