ID   EF202597; SV 1; linear; genomic RNA; STD; VRL; 2206 BP.
XX
AC   EF202597;
XX
DT   05-FEB-2007 (Rel. 90, Created)
DT   01-AUG-2007 (Rel. 92, Last updated, Version 2)
XX
DE   Cucumber mosaic virus isolate Tsh segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2206
RX   DOI; 10.1007/s11262-007-0094-z.
RX   PUBMED; 17417698.
RA   Chen Y., Chen J., Zhang H., Tang X., Du Z.;
RT   "Molecular evidence and sequence analysis of a natural reassortant between
RT   cucumber mosaic virus subgroup IA and II strains";
RL   Virus Genes 35(2):405-413(2007).
XX
RN   [2]
RP   1-2206
RA   Chen Y., Chen J.;
RT   ;
RL   Submitted (30-DEC-2006) to the INSDC.
RL   Institute of Bioengineering, Institute of Bioengineering, Zhejiang Sci-Tech
RL   University, Xiasha 2# Road, Hangzhou, Zhejiang 310018, China
XX
DR   MD5; c20792317e936cf4bae1d590306eb833.
DR   EuropePMC; PMC3550734; 23637513.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2206
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Lycopersicon esculentum"
FT                   /isolate="Tsh"
FT                   /serotype="II"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:12305"
FT   gene            97..936
FT                   /gene="3a"
FT   CDS             97..936
FT                   /codon_start=1
FT                   /gene="3a"
FT                   /product="3a protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q8AZL4"
FT                   /protein_id="ABN03948.1"
FT                   /translation="MAFQGTSRTLTQQSSAASSDDLQKILFSPDAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPQVTSNNLLSFFKSGYDAGELRSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLKIYLADLGDKELSPIDGQCVTLHNHELPALISFQPTYDCPMELVGNRHRCFAVVVE
FT                   RHGYIGYGGTTASVCSNWQAQFSSKNNNYTHAAAGKTLVLPYNRLAEHSKPSAVARLLK
FT                   SQLNNVSSSRYLLPNVALNQNASGHESEILNESPPIAIGSPSASRNNSFRSQVVNGL"
FT   gene            1229..1885
FT                   /gene="CP"
FT   CDS             1229..1885
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT                   /db_xref="GOA:Q76CB0"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q76CB0"
FT                   /protein_id="ABN03949.1"
FT                   /translation="MDKSGSPNASRTSRRRRPRRGSRSASGADAGLRALTQQMLRLNKT
FT                   LAIGRPTLNHPTFVGSESCKPGYTFTSITLKPPEIEKGSYFGRRLSLPDSVTDYDKKLV
FT                   SRIQIRINPLPKFDSTVWVTVRKVPSSSDLSVAAISAMFGDGNSPVLVYQYAASGVQAN
FT                   NKLLYDLSEMRADIGDMRKYAVLVYSKDDKLEKDEIVLHVDVEHQRIPISRMLPT"
XX
SQ   Sequence 2206 BP; 496 A; 512 C; 527 G; 671 T; 0 other;
     gtaatcttac cactttcttt tcacgtcgtg tcgcgtcagt ccacgctgtg tgtgtgtgtg        60
     tgttagttag tgtgtcgtgt ctagattacg aaggttatgg cttttcaagg taccagtagg       120
     acgttaactc aacagtcctc ggcggcgtcg tctgacgact tacagaagat attattcagc       180
     cccgatgcca tcaagaagat ggctactgag tgtgacctag gtcgacatca ttggatgcgc       240
     gcggataacg ccatctctgt cagacctctc gttccccaag taaccagtaa caatttattg       300
     tctttcttta aatctgggta tgatgccggt gaattgcgct ctaaaggcta tatgagcgtt       360
     cctcaagtgc tgtgtgccgt taccaggacg gtttctacgg acgctgaggg ttctttgaaa       420
     atttatttgg ctgacctagg tgataaagaa ttatccccaa ttgatgggca atgtgttact       480
     ttacataatc atgagctccc tgctttgata tctttccaac ctacctacga ttgccccatg       540
     gaattagttg gcaatcggca tcggtgtttc gcggtagtcg ttgagagaca tggttatatt       600
     ggttacggtg gtaccactgc tagcgtgtgt agtaactggc aagctcagtt ttcttcaaag       660
     aataataatt acacacacgc cgctgctggt aagactcttg tgttgcctta caacagatta       720
     gctgagcatt cgaaaccgtc agccgttgct cgcctgttga agtcgcagtt aaacaacgtt       780
     agctcatcgc gctatctttt gccgaacgtt gctcttaatc aaaatgcgtc tgggcacgag       840
     tccgagattt taaacgaaag ccctcccatc gctataggga gtccgtccgc gtcccgtaac       900
     aatagcttca gatcgcaggt ggttaacggt ctttagtgtt ttgttacgtt gtacctatgt       960
     atatatatac tacgtttatc ttccgtatgt aaatacatgt gagtctagag tcccgtgtga      1020
     gttgtaacgg tagacatctg tgacgcgatg ccgcttgaag atttcccatc tggggttagt      1080
     aagtccacat cacagtttta aggttcaatt ccttttgctc cctgttgggc cccttacttt      1140
     ctcatggatg cttctccgcg agttagcgtt tagttgttca cctgagtcgt gtgttttgtt      1200
     tgttttgttt tcgcgtctta gtgtgcctat ggacaaatct ggatctccca atgctagtag      1260
     aacctcccgg cgtcgtcgcc cgcgtagagg ttctcggtcc gcttctggtg cggatgcagg      1320
     gttgcgtgct ttgactcagc agatgctgag actcaataaa accctcgcca ttggtcgtcc      1380
     cactcttaac cacccaacct tcgtgggtag tgaaagctgt aaacccggtt acactttcac      1440
     atctattacc ctgaaaccgc ctgaaattga gaaaggttca tattttggta gaaggttgtc      1500
     tttgccagat tcagtcacgg actatgataa gaagcttgtt tcgcgcattc aaatcaggat      1560
     taatcctttg ccgaaatttg attctaccgt gtgggttaca gttcggaaag taccttcatc      1620
     atccgatctt tccgtcgccg ccatctctgc tatgtttggc gatggtaatt caccggtttt      1680
     ggtttatcag tatgctgcgt ccggagttca ggccaacaat aagttacttt atgacctgtc      1740
     cgagatgcgt gctgatatcg gcgacatgcg taagtacgcc gtcctggttt attcgaaaga      1800
     tgataaacta gagaaggacg agattgtact tcatgtcgac gtcgagcatc aacgaattcc      1860
     tatctcacgg atgctcccga cttagtccgt gtgtttaccg gcgtccgaag acgttaaact      1920
     acactctcaa tcgcgagtgt tgagttggta gtattgctcc aaactgcctg aagtccctaa      1980
     acgtgttgtt gcgcggggaa cgggttgtcc atccagctta cggctaaaat ggtcagtcgt      2040
     gtctttcaca cgccgatgtc ttacaaggcg tcgaggtacc cttgaaatca tctcctagat      2100
     ttcttcggaa gggcttcgtg agaagctcgt gcacggtaat acactgatat taccaagagt      2160
     gcgggtatcg cctgtggttt tccacaggtt ctctaaaagg agacca                     2206
//