Dbfetch
ID EF202596; SV 1; linear; genomic RNA; STD; VRL; 3047 BP. XX AC EF202596; XX DT 05-FEB-2007 (Rel. 90, Created) DT 01-AUG-2007 (Rel. 92, Last updated, Version 2) XX DE Cucumber mosaic virus isolate Tsh segment RNA2, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3047 RX DOI; 10.1007/s11262-007-0094-z. RX PUBMED; 17417698. RA Chen Y., Chen J., Zhang H., Tang X., Du Z.; RT "Molecular evidence and sequence analysis of a natural reassortant between RT cucumber mosaic virus subgroup IA and II strains"; RL Virus Genes 35(2):405-413(2007). XX RN [2] RP 1-3047 RA Chen Y., Chen J.; RT ; RL Submitted (30-DEC-2006) to the INSDC. RL Institute of Bioengineering, Institute of Bioengineering, Zhejiang Sci-Tech RL University, Xiasha 2# Road, Hangzhou, Zhejiang 310018, China XX DR MD5; a286d8b4157a3edd0d4faa3f91e0f646. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3047 FT /organism="Cucumber mosaic virus" FT /segment="RNA2" FT /host="Lycopersicon esculentum" FT /isolate="Tsh" FT /serotype="IA" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:12305" FT gene 86..2659 FT /gene="2a" FT CDS 86..2659 FT /codon_start=1 FT /gene="2a" FT /product="2a protein" FT /db_xref="GOA:A2THY8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A2THY8" FT /protein_id="ABN03946.1" FT /translation="MAFPAPAFSLANLLNGSYGVDTPEDVERLRFEQREEAAAACRNYR FT PLPAVDVSESVTEDAHSLQTPDGAPAEAVSDEFVTYGAEDYLEKSDTELLVAFETMVKP FT MRIGQLWCPAFNKCSFISSIAMARALLLAPRTSHRTMKCFEDLVAAIYTKSDFYYSEEC FT EADDVQMDISSRDVPGYSFEPWSRTSGFEPPPICEACDMIMYQCPCFDFNALKKSCAER FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYEKCPTPTIAIPPNLNRATDRVDIN FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFISYINGNSLASSN FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP FT ATITYHKKSITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMAGFDVKNKYCLEID FT LSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSQLPPVGDPSKFTTLYNMEA FT KVMEPSVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD FT RLKFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYKELYYSDRRQC FT ELINSFCITEFRTERVNSNKQRKKHGIERGRDDKRRTPTGSYGGGEEAETKVSQAESTG FT TRSQKSQRESAFKSQTVPFPTVLSSGWSGTDRVIPPHERGGVTRA" FT gene 2418..2750 FT /gene="2b" FT CDS 2418..2750 FT /codon_start=1 FT /gene="2b" FT /product="2b protein" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:A2THY9" FT /protein_id="ABN03947.1" FT /translation="MELNVGAMTNVELQLARMVEAKKQRRRSHKQNRRERGHKSPSERA FT RSNLRLFRFLPFYQVDGPELTGSYRHMNVAELPEPEASRLELSAEDHDFDDTDWFAGNE FT WAEGAF" XX SQ Sequence 3047 BP; 775 A; 689 C; 702 G; 881 T; 0 other; gtttatttac aagagcgtac ggttcaaccc ctgcctcctc tgtaaaactc cctagacttt 60 aaaacttctt tctagtatct tttctatggc ttttcccgcc cccgcattct cactagccaa 120 tcttttgaat ggtagttacg gtgtcgacac tcccgaggat gtggaacgct tgcgatttga 180 gcaacgcgaa gaggctgccg cggcctgccg taattacagg cccttacccg ctgtggatgt 240 cagcgagagt gtcacagagg acgcgcattc cctccaaact cctgacggag ctcccgctga 300 agcggtgtct gatgagtttg taacttatgg tgctgaagat taccttgaaa aatctgatac 360 tgagctcctt gtcgcttttg agacgatggt caaacccatg cgtatcggac aattgtggtg 420 ccctgcgttt aataaatgtt cttttatttc cagcattgct atggccagag ctttgctgtt 480 ggcacctaga acatcccacc gaaccatgaa gtgttttgaa gacctggtcg cggctattta 540 cactaaatct gatttctatt acagtgaaga gtgtgaagcc gacgacgttc agatggatat 600 ctcgtctcgc gatgtacccg gttattcttt cgaaccgtgg tcccgaacgt ctggattcga 660 accgccgccc atttgtgaag cgtgcgacat gatcatgtac cagtgcccgt gttttgattt 720 caatgcttta aagaaatcgt gcgctgagag gactttcgct gatgattatg ttattgaagg 780 tttagatggt gttgttgata atgcgacttt gttgtcgaat ctgggtccat ttttggtacc 840 tgtgaaatgt caatatgaaa aatgtccaac gccgaccatc gcgattcctc cgaatttaaa 900 tcgtgctact gatcgtgttg atatcaattt ggttcaatcc atttgtgact cgactctgcc 960 cactcatagt aactatgacg actcttttca tcaagtgttc gtcgaaagtg cggattactc 1020 catagatctg gatcatgtta gacttcgaca gtctgatctt attgcaaaaa ttccagactc 1080 agggcatatg ataccggttc tgaacaccgg gagcggtcac aagagagtag gtacaacgaa 1140 ggaggttctt acagcaatca agaaacgtaa tgctgacgtt ccagagctag gcgattccgt 1200 taatctgtcc agattgagta aagctgtggc tgagagattc ttcatttcat acatcaatgg 1260 taactctcta gcatccagca actttgtcaa tgtcgttagt aatttccacg attacatgga 1320 gaagtggaaa tcctcaggtc tttcttatga tgatcttcca gatcttcatg ctgaaaattt 1380 gcagttttat gatcacatga taaaatctga tgtgaaacct gtggtgagcg acacgctcaa 1440 tatcgacaga ccggttccag ctactataac gtatcataag aagagtataa cctcccagtt 1500 ctcaccgtta ttcacagcgc tattcgagcg cttccagaga tgccttcgag aacgtattat 1560 tcttcctgtt ggtaagattt catctcttga gatggcagga tttgatgtca aaaacaagta 1620 ctgcctcgag attgatttgt ctaagtttga taagtctcag ggtgaatttc acttactaat 1680 tcaggaacac attttgaatg gtctaggatg tccagctccg ataaccaaat ggtggtgcga 1740 tttccaccga ttctcttaca tcagagaccg tagagctggt gttggtatgc ctattagttt 1800 ccagagacga actggtgatg cattcactta ttttggcaat accattgtca ccatggctga 1860 gttcgcctgg tgttatgaca ccgaccaatt cgaaaagctt ttattctcag gcgatgactc 1920 tctaggattt tcacagcttc cccctgttgg tgatccgagt aaattcacga ctctttacaa 1980 catggaagct aaggtgatgg aaccgtcagt accatacatt tgttcgaagt tcttactctc 2040 tgacgagttc ggtaacacat tttccgttcc agatccattg cgcgaggttc agcggttagg 2100 aacaaagaaa attccctact ccgacaatga tgaattcttg tttgctcact tcatgagctt 2160 tgttgatcga ttgaagtttt tggaccgaat gtctcagtcg tgtatcgatc aactttcgat 2220 tttctttgaa ttgaaataca agaagtctgg ggaagaggct gctttaatgt taggcgcctt 2280 taagaaatac accgctaatt tccagtccta caaagaactc tattattcag atcgtcgtca 2340 gtgcgaattg atcaattcgt tttgtatcac agagttcagg actgagcgtg taaattccaa 2400 taaacagcga aagaaacatg gaattgaacg tgggcgcgat gacaaacgtc gaactccaac 2460 tggctcgtat ggtggaggcg aagaagcaga gacgaaggtc tcacaagcag aatcgacggg 2520 aacgaggtca caaaagtccc agcgagagag cgcgttcaaa tctcagactg ttccgtttcc 2580 taccgttcta tcaagtggat ggtccggaac tgacagggtc ataccgccac atgaacgtgg 2640 cggagttacc cgagcctgag gcctctcgtt tagagttatc ggcggaagac catgattttg 2700 acgataccga ttggttcgcc ggtaacgaat gggcggaagg agctttctga acccctcctt 2760 cctctccctc cagttttctg tggcgggagc tgagttggta gtattgctat aaactgcctg 2820 aagtcactaa acacattgtg gtgaacgggt tgtccatcca gcttacggct aaaatggtca 2880 gtcgtagaga aatctacgcc agcaaactta caagtttctg aggcaccttt gaaaccatct 2940 cctaggtttc ttcggaagga cttcggtccg tgtacttcta gcacaatgtg ctagtttcag 3000 ggtacgggtg cccccccact ttcgtggggg cctccaaaag gagacca 3047 //