ID EF202595; SV 1; linear; genomic RNA; STD; VRL; 3394 BP. XX AC EF202595; XX DT 05-FEB-2007 (Rel. 90, Created) DT 01-AUG-2007 (Rel. 92, Last updated, Version 2) XX DE Cucumber mosaic virus isolate Tsh segment RNA1, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3394 RX DOI; 10.1007/s11262-007-0094-z. RX PUBMED; 17417698. RA Chen Y., Chen J., Zhang H., Tang X., Du Z.; RT "Molecular evidence and sequence analysis of a natural reassortant between RT cucumber mosaic virus subgroup IA and II strains"; RL Virus Genes 35(2):405-413(2007). XX RN [2] RP 1-3394 RA Chen Y., Chen J.; RT ; RL Submitted (30-DEC-2006) to the INSDC. RL Institute of Bioengineering, Institute of Bioengineering, Zhejiang Sci-Tech RL University, Xiasha 2# Road, Hangzhou, Zhejiang 310018, China XX DR MD5; 9c6d5c3363a6604acfca64fb76bbeed2. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3394 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="Lycopersicon esculentum" FT /isolate="Tsh" FT /serotype="II" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:12305" FT gene 96..3077 FT /gene="1a" FT CDS 96..3077 FT /codon_start=1 FT /gene="1a" FT /product="1a protein" FT /db_xref="GOA:A2THY7" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A2THY7" FT /protein_id="ABN03945.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGL FT KVYIRNVLDVKDSEVIRTRYGGKYDLHLTQQELAPHGLAGALRLCETLDCLDFFPRSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMSMRKVILNDPQQFDGRQ FT PDFCTESAAECKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GFIPELKCQWRKIKSAFSEEEDATCLAAKLNSTVFSRVRNGKTLIAFDFVEESTMSYVH FT DWDNIKSFMTDQTYSFNGMTYGIERCVIYAGVMTYKIVGVPGTCPPELIRHCIWFPSLK FT DYVGLKIPASDDLVKWKTVRILLSTLRETEEIAMRCYNDKKNWMDQFKIILGVLSSKSS FT TIVINGMSMQSGERIDLNDYHYIGFAILLHTKLKYEQLGKMYDMWNASFIWKWFASMSR FT PFRVFFSTVAKTLFPTLRPREEKEFLVKLSTFVTFNEECSFDGGKEWDVISSAAFVAAQ FT AVADGNILAEEKAKKLADRLAVPVEEEVSAIPEVSPTPADQGTACGLETETSELDSLSA FT QTRSPITRIAERATAMLEYSAYEKQLHDTTVSNLQRIWCMAGGDNKRNSLESNLKFVFD FT TYFSVDALVNVHFPTGRRMHPVPEGVVYSVGYNEEGLGPKLDSELYIVNGDCVISNSHD FT LFSITKSLLAPTGTISQVDGVAGCGKTTAIKSMFNPSTDIIVTANKKSAQDVRYALFKS FT TDSKEACAFVRTADSILLNDCPTVSRVLVDEVVLLHFGQLCAVMSKLHAVRALCFGDSE FT QIAFSPRDVSFDMRFSKLIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTRTKYSRW FT VSQSKVRKSVTSRAVASVSLVELDPTRFYITMTQADKASLITRAKELNLPKAFYTDRIK FT TVHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVAVTRHKVTFRYEYCGVLGGDLIASC FT IPLV" XX SQ Sequence 3394 BP; 861 A; 742 C; 785 G; 1006 T; 0 other; gttttattta caagagcgta cggttcaacc cctgcctccc ctgtaaaact accctttgaa 60 ttcttcttct cgacttttct tagtttaaaa ttcctatggc gacgtcctca ttcaacatca 120 atgaactggt agcctcccac ggcgataaag gactactcgc gacagccctc gttgataaaa 180 cagctcatga acagctggag gagcaacttc aacatcaacg tagaggcctt aaggtctaca 240 tccgtaatgt tttggatgta aaggactccg aagtcattcg gactcggtat ggtggtaagt 300 acgacctcca tctcacccag caggaattag ctccccatgg cctcgctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactttt tccctcgttc aggtctgcgg caggacctcg 420 tcttagactt cggaggaagt tgggtcacac actatcttcg cggacacaac gtacattgct 480 gctccccatg tttgggtatt cgtgacaaga tgcgtcacgc tgaaagatta atgagcatgc 540 gcaaggtcat tttaaacgat ccacaacagt ttgatggccg ccagccggac ttttgcactg 600 agtctgcagc tgaatgcaaa gttcaagccc actttgctat ttctatacac ggaggatatg 660 acatgggctt tagaggttta tgtgaggcaa tgaacgctca cggaactacg attttgaaag 720 ggacgatgat gttcgacggc gctatgatgt ttgacgacca aggctttatt cctgaactta 780 aatgtcagtg gcgaaaaatc aaatccgcct tttctgagga ggaggatgcc acttgtttag 840 cagctaaact caattccact gtattctcac gcgtgcgcaa cggaaaaacc ttaatcgcat 900 ttgacttcgt tgaagaatcc acgatgtctt atgttcacga ttgggataat ataaaatcgt 960 ttatgacaga tcaaacgtac tctttcaatg gtatgaccta tggaattgaa cgttgtgtta 1020 tttacgctgg cgtgatgact tacaagattg ttggtgtgcc tgggacgtgt ccaccggaac 1080 tcattcgaca ttgtatctgg ttcccctctt tgaaggacta tgttggtctt aagattcccg 1140 cgtctgatga cttggttaaa tggaaaacag tccgtatttt actgtcaaca ctacgtgaga 1200 ctgaagaaat tgctatgcgt tgttataacg acaagaagaa ttggatggat caattcaaga 1260 ttattctcgg tgttttatca tcgaagtcct ccacgatcgt tatcaatggt atgtctatgc 1320 aatctggtga acgtattgat ctcaatgatt atcattacat cgggtttgct attcttcttc 1380 acacgaaatt aaaatacgaa caacttggaa aaatgtacga tatgtggaat gcttccttta 1440 tttggaaatg gtttgcgtct atgtctagac cattccgtgt tttcttttcc actgttgcta 1500 agactttgtt tccaactttg agaccgcgcg aggaaaagga gtttttggtc aaactttcca 1560 ctttcgtcac ctttaacgag gagtgctctt ttgacggagg gaaagaatgg gacgtgatat 1620 catcagcggc ttttgtagcc gctcaggctg ttgcagatgg gaatattttg gccgaggaga 1680 aagctaagaa attagctgat cgtctggccg tgcctgttga agaagaagta tctgctattc 1740 ctgaggtgtc tcctacacct gctgatcagg gcactgcttg tggactggaa acagaaacat 1800 cggaactgga ttctctgtct gcccaaacac gttcccccat cacacggatc gctgaaagag 1860 cgaccgctat gcttgaatat tcagcttatg agaaacaatt gcacgatacc accgtttcaa 1920 atcttcaacg aatttggtgc atggcaggtg gcgacaacaa gagaaactct ttagagagta 1980 atttgaaatt tgtgtttgac acttattttt ctgttgacgc ccttgtgaat gttcactttc 2040 ctactgggag gcggatgcat cctgtgcctg agggcgtggt ttactctgtt ggttataatg 2100 aggagggtct cggtcctaaa cttgatagtg agttgtacat agttaatggt gattgtgtga 2160 tttcgaacag tcatgacctg ttttcgatca ctaaatcttt gttagctccc accggaacca 2220 tcagccaagt cgatggtgtg gctgggtgcg gaaaaaccac tgctataaaa tccatgttta 2280 atccttccac agatataatt gtcacagcca acaagaaatc tgctcaagat gtgcgttatg 2340 cgctttttaa atctactgac tccaaagaag cttgtgcttt tgttaggacc gctgattcca 2400 tattactcaa tgactgccct actgtgtctc gagtgcttgt ggatgaagtt gttttgttgc 2460 actttggtca gttgtgcgct gtcatgtcga aacttcatgc tgtcagagct ttgtgttttg 2520 gagattccga acagatagct ttctcccctc gtgacgtttc gttcgacatg cgtttctcta 2580 agcttattcc ggatgagacc agtgatgcgg acacaacttt ccgtagccca caagatgtag 2640 taccacttgt gcgtttgatg gctacgaagg ctctaccgaa aggaacccgt acgaaatact 2700 caagatgggt gtcccaatct aaagtgagga agtctgttac ttcgcgtgct gttgctagtg 2760 tatctctagt tgaactggac cccaccagat tctatattac gatgacgcaa gctgataaag 2820 cctcactaat tactagagct aaggaactga acctacccaa ggcattctac actgatagga 2880 taaagactgt ccatgaatct caaggtattt cagaagatca tgtgaccctg gttaggttga 2940 agagtactaa atgtgacctg ttcaagaaat tttcctactg cttagttgca gttactcgac 3000 acaaggtcac cttccgctat gagtactgtg gtgtgctagg tggggaccta atcgctagtt 3060 gtattccgtt agtctgaacg cggaaggtcc gaagacgtta aactacactc tctttattgc 3120 gagtgctgag ttggtagttt tgctttaaac tatctgaagt cgctaaatcc agtattggtt 3180 gcggacgggt tgtccatcca gcttacggct aaaatggtca gtcatgcccc aaaggcatgc 3240 cgacgcctta caaggttgtc gaggtaccct tgaaatcatc tcctagattt cttcggaggg 3300 gcttcgtgag aagctcgtgc acggtaatac actgatatta ccaagagtgc gggtatcgcc 3360 tgtggttttc cacaggttct ccataaggag acca 3394 //