Dbfetch

Dbfetch

ID   EF200108; SV 1; linear; genomic RNA; STD; VRL; 840 BP.
XX
AC   EF200108;
XX
DT   15-JAN-2007 (Rel. 90, Created)
DT   15-JAN-2007 (Rel. 90, Last updated, Version 1)
XX
DE   Citrus tristeza virus isolate T68-1 CP gene, partial cds; P18 gene,
DE   complete cds; and P13 gene, partial cds.
XX
KW   .
XX
OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
XX
RN   [1]
RP   1-840
RA   Hilf M.E.;
RT   "Discovery of New Viral Genotypes of Citrus Tristeza Virus with
RT   Overlapping, Degenerate Primers";
RL   Unpublished.
XX
RN   [2]
RP   1-840
RA   Hilf M.E.;
RT   ;
RL   Submitted (27-DEC-2006) to the INSDC.
RL   USDA-ARS-USHRL, 2001 S. Rock Road, Fort Pierce, FL 34945, USA
XX
DR   MD5; ca39021a8ca30a3511fa36d86b049aed.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..840
FT                   /organism="Citrus tristeza virus"
FT                   /lab_host="sweet orange"
FT                   /isolate="T68-1"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /db_xref="taxon:12162"
FT   CDS             <1..84
FT                   /codon_start=1
FT                   /product="CP"
FT                   /note="major capsid protein; CP; coding region interrupted
FT                   by sequencing gap"
FT                   /db_xref="UniProtKB/TrEMBL:A2ID17"
FT                   /protein_id="ABM60774.1"
FT                   /translation="KEQLLKKRGADEVVVTNVRQLGKFNTR"
FT   CDS             50..553
FT                   /codon_start=1
FT                   /product="P18"
FT                   /db_xref="InterPro:IPR008452"
FT                   /db_xref="UniProtKB/TrEMBL:A2ID18"
FT                   /protein_id="ABM60775.1"
FT                   /translation="MSGSLGNLTHVDLLRSDSRFLSGWWSFIVNVGDIIVRFALHVPSE
FT                   DMLNSFSAISNCTIIADGSALLKDNTVVDRLESMNPLAYLLKLAKTTTTICFTMSNKVL
FT                   FGTTKSEPLSCLAITSDRVLFKVIMGINVDDSRCGCSIWFYNNGTFQNGLTRCNNLVAL
FT                   FSAT"
FT   mRNA            587..840
FT   CDS             587..>840
FT                   /codon_start=1
FT                   /product="P13"
FT                   /db_xref="InterPro:IPR009692"
FT                   /db_xref="UniProtKB/TrEMBL:A2ID19"
FT                   /protein_id="ABM60776.1"
FT                   /translation="MGIRRVWLKVMAVITVLWYGKEPSISEGYNALMNDDFKFIDAHFS
FT                   NVSYAKKCYELANFDLDFLRIVIIPLSGGAVNESRADRA"
XX
SQ   Sequence 840 BP; 213 A; 140 C; 203 G; 284 T; 0 other;
     aaagaacaat tgttgaagaa gcgaggggct gatgaagttg tagttaccaa tgtcaggcag        60
     cttgggaaat ttaacacacg ttgatctatt gcgttctgat tctcgatttc tatcgggatg       120
     gtggagtttc atcgtgaacg tgggtgatat aatcgttcgg tttgcgttac atgttcctag       180
     tgaggatatg ctgaatagct tttcagctat atcgaattgt acgatcatag cagacggtag       240
     tgctttacta aaagacaaca ctgtggttga ccgtttagag agcatgaatc ctttggctta       300
     tttgttaaaa ttagcgaaaa cgactactac tatttgtttt actatgtcta ataaggttct       360
     ttttggtact actaaatctg aaccgcttag ttgtttagct atcacgtcgg atcgagtttt       420
     attcaaagtt attatgggta ttaacgttga tgattctcga tgtggctgca gtatttggtt       480
     ttacaacaat gggacgtttc aaaacgggtt gacccgttgt aacaatctcg tcgctttgtt       540
     tagcgcgact tagacacgaa gtgaccgttc gggtttaatt gctgcaatgg gtattcgacg       600
     cgtgtggtta aaggttatgg ctgtaattac ggtattgtgg tatggtaagg aaccttccat       660
     tagcgaaggt tacaatgctc ttatgaatga tgactttaag ttcatcgatg cgcacttttc       720
     aaatgtttct tatgctaaga aatgttacga gttggctaac ttcgacttag actttctacg       780
     catcgtcatc attcccttga gcggtggtgc ggtgaatgaa tcgcgtgctg atcgcgctaa       840
//