ID EF198242; SV 1; linear; genomic RNA; STD; ENV; 8926 BP. XX AC EF198242; XX DT 16-JUL-2007 (Rel. 92, Created) DT 18-JUL-2007 (Rel. 92, Last updated, Version 2) XX DE Marine RNA virus JP-B, complete genome. XX KW ENV. XX OS Marine RNA virus JP-B OC Viruses; Riboviria; Picornavirales; Marnaviridae; Locarnavirus; OC Jericarnavirus B. XX RN [1] RP 1-8926 RX PUBMED; 17617913. RA Culley A.I., Lang A.S., Suttle C.A.; RT "The complete genomes of three viruses assembled from shotgun libraries of RT marine RNA virus communities"; RL Virol J 4:69-69(2007). XX RN [2] RP 1-8926 RA Culley A.I., Lang A.S., Suttle C.A.; RT ; RL Submitted (26-DEC-2006) to the INSDC. RL Botany, University of British Columbia, 3529-6270 University Blvd, RL Vancouver, BC V6T 1Z4, Canada XX DR MD5; 06068bdffd3d9435e1e4de8b37bf666c. DR EuropePMC; PMC1948888; 17617913. DR EuropePMC; PMC3241695; 22195010. XX FH Key Location/Qualifiers FH FT source 1..8926 FT /organism="Marine RNA virus JP-B" FT /environmental_sample FT /mol_type="genomic RNA" FT /country="Canada:Vancouver, British Columbia" FT /isolation_source="Jericho Pier" FT /collection_date="29-Jun-2000" FT /db_xref="taxon:439016" FT CDS 775..5619 FT /codon_start=1 FT /product="unknown" FT /note="orf1; contains domains similar to type III viral FT helicase, C-like cysteine protease and type I RdRp" FT /db_xref="GOA:A7KCA2" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A7KCA2" FT /protein_id="ABQ50601.1" FT /translation="MNKRNDIHFRPYFGQSGLNEKNFTLQCGECPKDDNILYLSSKDSI FT KKIKKKIGGWFRSTMSEITYKSMTDDDYIIKLIDDVVTFVSMSTQKIEGLGVVETILQA FT FRIFIKCRFHESTWKTLSSRFYTYIKKILGEFTVQTADHFFEGARGYLNSYKNICHSEI FT AVKLYRCSMYIMSLSLFDKLGISFDAFGYSKLEQVALKKKYYRRPDFLYVLADTILFLA FT ERGYQIYLTGDIDCIFHSGGTYKKIYETCREMQRKSHLLHNPEEYGFTESGFRSDLDEI FT IEKLQNIVKHSIRLDKSDRETIRFTLNDMLMMRDDLNTKSAARRNRKAPFAVQIFGDSG FT IGKTTLTNIICTYFAKHENLPLGDEFRYTVNPAAKYWDGFVSSCHTIILDDVANEAPEM FT NDPKSLNQIIQIINNASYCPDQASLENKGKTPLRAKLVVGTTNVKNLNAYHYFSCPSAV FT QRRFPFIITPTVRSKYKDERGMLCSTNVPPGPYPDLWTFNVDLVKPVAVSGGRRLAEFE FT NIHTDIDLRGLLMWLDKTITSFNTDQTRVQECITEMRKVNLCMCCNLPDTMCMSTVQND FT TTSVYSTIVGLFCLNFIWNSYFVQLMRLYFYYYFLCRFCTRKFNMCLREMKRRSITRED FT WYRIGKSVQGTISSPRVLATIATITAAAYAMYKVYKTIRPQGKETELVGERPVDELNGR FT ENVWYNNSFDLCPANFTRESSSSKSMDFNSFCKKISENVIVMKINKTDSSGYVEGRALG FT IGGHIYITNNHNIPQMNEPYFIDVVQSCSLGVNSNLKFVMSESDVFRIPSKDIAFLTFR FT TLPPKKQIVKYIQVGKSNGIFDGSYASKDSKGKFNPIPVLSIKRTEERNLYFQKKILML FT KLICGLDIWINHAKDGDCGSPLIINSSYGYSIVGLHCLAGNFDKTVLATEIDGKFVSEV FT YNSLKNFNVQSGNLSSISSVNIKREVGDLNKKSVFRYIDNGCMNVYGSFTDFRGKSKSN FT VENSPMSTFLKAKGYQVKYCKPEMRSWVPWHIAAKDLVKPISKLDTGILNHCVEGYISD FT VRNNLVNIDNVKDMLMVLDDFTTINGARVAYIDKMKRNTSAGNPWKRSKEYFLRSIPPN FT HGMQDPVEVDEEIGDRMDDILKCYRQNQQFHPNFCAHLKDEPVSFKKAKVGKTRVFTGA FT TMDWYLIVRKYLLSFARLLQNERFAFEAAPGTIAQSLEWHELYDYVVKNGEDRVIAGDY FT KAFDKRMSPKEILAAFDIIIYFCQLSGNYSEEDIQIIRCIAEDTAFALVDYNGDLVQLY FT GSNPSGNPLTVILNSIVNSLRMRYVYFMLNPEHTVTTFKDNVNLMTYGDDNIMSVSREC FT DWFNHTSISETFATLNIVYTMADKESASVPFINIKDASFLKRTWRMDDQLGCYVAPLEE FT ESIEKSLMVWTRSKAVTEEAQGIDVISSALREYFWYGEDIYNEKLYLLKDLVEHLGWKL FT WVQDSTFPTYSDLCSDFINRSKKCKSYRQVFNLDDESWTVQSKNIPLEDAHTWVFYASA FT YDSFQQYVMHIMFVRLLSPKVRELIVPRGSSAILSSFYMAKLCGRLHNFVFIEILNFVI FT TQLLTKSILLIIAFATEASFFVIPYLALRYFIFRR" FT CDS 5914..8505 FT /codon_start=1 FT /product="unknown" FT /note="orf2; similar to viral structural proteins" FT /db_xref="GOA:A7KCA3" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR014872" FT /db_xref="InterPro:IPR024343" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:A7KCA3" FT /protein_id="ABQ50602.1" FT /translation="MVCSKTHLKDGDLKTQPKQSSPQLSYEALRKEEKPPSILNCFNLS FT NCVVQSSDIIEMTPESTGNTMQEENVGFDGQQDPILTIPNDLSRVQVDQSQNVTLGNFL FT KRPVQIATQTWTVGSTLDQLVDNFDPWHLYFNHAPIRRKLDNYYLVRCNLHLKFVVNAS FT PFFYGCTLASYQPLTNFAPGFTPTGTAGQERTAYTQRPHIWIYPQDSQGGEMVLPFLYY FT KNWLDATSAVDLTNMGTLSFQSFGSLANANGATGDIEIIVYAWAEDIEVAGPTVALAVQ FT ARDEYQDDGVVSKPASAIARATSMLSSVPVIGPFATATSHAAEAVSKIASLFGYTNTPV FT IDDIHQFQPAPFPNLASTDIGMPIDKLTLDAKNELSIDPSIAGSTPQDELIISNFCARE FT AWIFENTWTSADTLNTGLFYAKVSPALYTTDAVGPTSILWNTPMSHVSDMFEYWRGDII FT FRFKFICSKYHRGRVRINWDPHGDIGTAGDYTTETYTKIVDITDETDVEFRVPYTQALA FT YLRILPGKTKHFAAASTSTTNGTYFNGVITVRVLNRQTSPITSADIRMLVFVKGADNLE FT FAAPKEIDTSYSPYSVQSYDSRMDIDNTMHNMGVKPSSADPNINLVYFGESIVSLRQLM FT RRQSLYKRLVAAAGSAIDTIYLTTFKLARLPLYPGFDVNGIDSAIGVVSGLPEPYNYTN FT WLPITWVGQCFVGVRGSVLYSVNANGQQNSKTVIRAREFGTHNSSNAALSQSYGGNGAL FT KQSIRISQLAGNSGMTMTNQETQAGITAMLPMYTNVKFIVNSPSTRSVGNDIDGSLHDA FT MRVQTLYQTETNSFNDTFVDLYCAAGTDMSFVFFINVPAVNIYNSVPTPLP" XX SQ Sequence 8926 BP; 2747 A; 1600 C; 1756 G; 2823 T; 0 other; ttcggaatcc cctccattta gtaatacttt tgtattattc gtgcgtacag gcacattatt 60 ttttactgta cattttgaaa caaacacttg tgatctttta ttagatcaca taatgtttat 120 tttaattact atgattgctc ctgtagttga tctgtgatta aggcatacta tatttataaa 180 tttggcgctt atccatgtta tcactctcag gcaatcatac ccctgagttt agaatatcat 240 ggacctcctt atttaattca tatggccctt tttcattgaa atcgtaaatc ttacaaatca 300 tttgttatta aaatgtcatt gaataagagc atgtattcta atgacgtttc taacttcatg 360 caaaaacacc ttttatatgt tccaataaaa acaattaaaa aaaaatatat aaaaattaaa 420 ataattataa aaaatataaa caatataaaa caataaaata taaaaataag atttgtaatg 480 tgtgttcttg ttagatttca ttctcctaat aattaaattt ttgtgaaaca catcgaatgt 540 ttgatgttag tatttgcata gtactactgt ggtaaagcaa gtggtttgat attttgtctt 600 caaacctctc agctgtaacg ttctcagctc acgttgccat ctctgtttat gcggtggatc 660 atcaccatcg tccacggtac gaaatgatga tattattact tatcaaggtt agaaccctag 720 atatatcctg cagcgggaga aaacaaaatc tgaatttaaa gataagaaca agaaatgaat 780 aaaagaaacg atatacactt tagaccctat tttgggcaaa gtggattaaa cgaaaagaat 840 tttactcttc aatgtgggga atgtcccaaa gatgataaca tcttgtactt atcttcaaaa 900 gattctataa aaaagattaa gaaaaagatt ggtggttggt ttcgatctac aatgtccgaa 960 ataacttaca aatctatgac tgatgatgat tacatcataa agttgataga tgatgtggtt 1020 actttcgttt ccatgtcgac ccaaaaaatt gaaggcttgg gtgttgttga gactatcctt 1080 caagcctttc gcatctttat aaaatgtaga tttcacgaat caacgtggaa gactttgtct 1140 tctagatttt atacttacat caagaagatt ttgggtgaat ttactgtcca aacagccgat 1200 cactttttcg aaggagcgcg aggttacttg aattcctata aaaatatttg tcatagtgaa 1260 attgctgtta aattataccg atgctctatg tacataatga gtttgtctct ttttgataaa 1320 ttgggcattt cattcgatgc ttttggatat tcaaagctcg aacaagttgc tttgaaaaag 1380 aaatattaca gaaggcccga ttttctgtat gttttagcag atactatact ctttttggcg 1440 gaacgcggtt atcagattta cttaactggt gatattgatt gtatctttca ttcaggcggt 1500 acctacaaga agatctacga aacttgtcga gaaatgcaga ggaaatctca tctattgcat 1560 aatcctgaag aatatggttt tacggagagt ggatttagat ccgatttaga tgaaattatc 1620 gagaaacttc agaatattgt caaacactcg atacgtttgg acaaaagcga cagggaaacc 1680 ataaggttca cactcaacga tatgttgatg atgcgcgacg atttaaatac taaatcagct 1740 gctcgtcgta atcgtaaggc accattcgct gttcaaatct ttggagattc tggcattggt 1800 aagacaacgt tgaccaatat tatatgcaca tactttgcta agcatgagaa cctcccctta 1860 ggggatgagt ttcgatatac tgttaaccca gcagctaagt attgggatgg gtttgtctca 1920 tcatgccata ctataatttt ggatgatgtt gccaatgagg ctcctgagat gaacgatccc 1980 aaatcattga atcaaatcat acagataata aataatgcat cctattgtcc cgatcaagct 2040 tcgttggaga ataaaggtaa aacaccctta agggctaagt tggtcgttgg tactacgaat 2100 gtgaagaatc taaacgctta tcactatttt tcatgtccat ctgcggtcca aaggcgcttt 2160 ccatttatca ttacaccaac agtacgatct aagtacaagg atgaaagagg aatgttatgt 2220 tctactaatg tgccgccagg tccctatcca gatctttgga cattcaatgt cgatttggtg 2280 aaaccagtcg ccgttagtgg tggaagaagg ctcgcagaat tcgaaaatat ccacacagat 2340 atagatcttc gtggtttatt gatgtggttg gacaaaacta ttaccagttt caacaccgat 2400 caaacacgag tacaagaatg tattacagaa atgcgcaagg ttaacttgtg catgtgctgc 2460 aatctaccgg ataccatgtg tatgtcaacg gtgcagaatg atacgacttc tgtttattca 2520 actattgttg gactcttctg tcttaatttc atatggaata gttatttcgt tcaattgatg 2580 cgattgtact tctactatta ttttctgtgc aggttttgca caaggaaatt taatatgtgt 2640 cttcgcgaaa tgaaaaggag aagcataaca cgagaagatt ggtaccgaat agggaaatct 2700 gttcagggta ctatcagtag tcccagggtt ttagcgacta tagctactat cactgcggca 2760 gcttatgcta tgtacaaagt gtataaaacc atcagacctc agggtaagga gacagaactt 2820 gttggcgagc gacctgtcga tgagcttaac ggaagggaaa atgtatggta taacaattcg 2880 ttcgatttat gtcctgcaaa ttttacacga gaaagttcat cctctaaaag tatggatttt 2940 aattcatttt gtaagaagat atcagaaaac gttattgtta tgaagataaa caaaacagat 3000 tcgtcgggat acgttgaagg tcgagcactt gggattggtg gtcatattta tatcacaaac 3060 aatcacaata taccccaaat gaatgaaccc tacttcattg acgttgttca gtcttgctca 3120 cttggcgtga attcaaattt gaaatttgtt atgtccgaga gcgatgtttt tcgtatacca 3180 tctaaagaca tagcttttct aacttttaga acattgccac caaaaaaaca gattgttaaa 3240 tatatacagg taggcaaatc taatggaatt tttgatggat cctacgcttc caaagatagc 3300 aagggaaaat tcaatcctat acctgttttg tctattaagc gcaccgaaga acgtaatctc 3360 tattttcaaa aaaaaatatt gatgctaaag ctaatatgtg gtttggacat ttggataaat 3420 catgcgaaag atggagactg tggttctcct cttatcataa atagctcgta cggttatagt 3480 attgttggtt tacattgttt agctggcaat tttgataaaa ctgtgttggc tactgaaatt 3540 gatggtaagt tcgtgtctga ggtatacaac agtcttaaaa atttcaacgt ccaatcagga 3600 aatttgtcat ctatatcctc tgttaatatt aaacgtgaag ttggcgattt aaacaaaaaa 3660 tccgttttcc gttacattga taatggttgc atgaatgttt atggttcttt cactgatttt 3720 cgtggtaaat ccaaatcgaa tgtcgagaat tcaccaatga gcacttttct taaggctaaa 3780 ggatatcaag taaaatattg taaacctgag atgagatcat gggtcccgtg gcatattgct 3840 gcaaaggacc tagtgaaacc catctcaaaa ctcgatacgg gtatccttaa ccattgtgtc 3900 gagggataca ttagtgatgt tcgtaataat cttgtgaata tagataatgt aaaagatatg 3960 ctaatggttt tggatgattt tactactatc aatggggctc gggttgccta cattgacaaa 4020 atgaaacgaa atactagtgc tggtaatccg tggaaaagat ctaaggagta tttcttgcgc 4080 agtataccac ctaatcatgg tatgcaagat cctgttgaag tggatgaaga gattggtgat 4140 agaatggatg atatattgaa atgttaccgt cagaaccaac aatttcaccc aaacttttgt 4200 gcccatttga aagatgaacc agtttctttc aagaaggcta aggttggtaa aacccgtgtt 4260 ttcacaggtg caaccatgga ttggtatctc attgtaagga agtatttact ttcatttgcg 4320 cgcttacttc aaaacgaacg attcgccttt gaggctgcac caggaactat agcacaatcc 4380 ctagaatggc atgaactcta cgactacgtt gttaaaaatg gtgaagatcg cgtcatcgct 4440 ggagactata aagctttcga caaacgaatg agtcccaaag aaatcttagc agcatttgac 4500 ataattattt atttctgtca actgtctggt aattattccg aagaggatat acaaattata 4560 aggtgtatcg ctgaggatac tgcctttgca cttgtagatt acaatggtga tcttgtgcaa 4620 ttgtatggat ctaatccatc cggaaatcct ttaacggtca tcttaaacag tatagttaat 4680 agtttgagga tgagatatgt ttatttcatg ttgaatcctg aacataccgt taccacattc 4740 aaggataatg taaatctgat gacttacggc gacgacaaca taatgtcagt ctcgcgggaa 4800 tgtgattggt tcaatcacac ctccatatcg gaaaccttcg cgacattgaa tatagtttat 4860 acaatggctg ataaggaatc cgcgagtgta ccgtttatca acatcaaaga tgcttccttc 4920 cttaagagaa cttggagaat ggatgatcaa ctcgggtgct atgtggcccc tttggaagag 4980 gaatctattg aaaaatctct tatggtttgg actcgttcca aagctgttac ggaggaagct 5040 caaggaattg atgttatatc aagtgctttg agagagtact tttggtacgg agaagatatc 5100 tataatgaaa aactttatct cttgaaagat ttagtggaac atttgggttg gaaattgtgg 5160 gtccaagatt ctacttttcc aacttactct gatctgtgca gtgatttcat taatcgttcc 5220 aagaagtgca aatcatatcg gcaagtattt aatttggacg atgaatcctg gactgtacag 5280 agtaagaata ttccactaga agatgctcat acatgggtgt tttatgcatc agcgtatgat 5340 tcttttcaac aatatgttat gcatataatg tttgttcgtc tcttatcacc caaagttaga 5400 gagttaattg taccacgcgg ttcttcagct attttgagtt cattttatat ggctaaactg 5460 tgtggtagat tgcacaactt cgtgtttata gagatattga attttgtgat tacccagctt 5520 cttactaaat caatccttct aattatcgct ttcgctacag aggctagctt ttttgttata 5580 ccctatctag cgttgagata ttttatcttt aggcggtaat cagcgatgcg atgcatatgt 5640 ccgaaatgac aataaactaa tggaagtccg caatgacatt aaactattgt gaggactttt 5700 attcatttcg tcctccttaa agtgagatgg tatcgtcctc catccaccaa gattagaaaa 5760 tgtcaaactc acaagcgaag cgcttgtgtc tgtgcggatg cagtgttgta actttcgttc 5820 atgcaattta gcgtagcatg agcaacattg ctggggccta taattataag cccaccttgc 5880 gtgataaagg cacaggataa ttacatatta ctcatggttt gttctaaaac tcacttaaaa 5940 gatggagatc ttaaaactca acctaaacaa tcaagtcctc aattatcata tgaggctctt 6000 cgtaaagagg aaaaaccacc atctattctt aactgtttca atttatctaa ttgtgttgtc 6060 cagagttctg acattataga aatgacgccg gaatcaactg gcaacacaat gcaggaggaa 6120 aatgtaggat ttgatggcca acaggatccc atattgacca taccaaatga cttatcaaga 6180 gtccaagttg atcagagcca aaatgttact cttggaaatt ttctaaagag accggttcaa 6240 attgctactc agacatggac tgttggttct acattggatc agcttgttga taatttcgat 6300 ccatggcatt tgtatttcaa ccatgcgcct ataagacgca agttggataa ctactatttg 6360 gtcagatgta atttacatct taagtttgtg gttaacgctt cgccattttt ctatggttgt 6420 actttagcct cttatcaacc acttactaat ttcgcgcctg gttttacacc aactggcaca 6480 gccggtcaag aaagaacagc gtatactcaa agacctcata tttggattta tccacaagat 6540 tctcagggtg gtgaaatggt tttaccgttt ctctattata agaattggtt ggatgctacg 6600 tccgccgttg atctaacaaa tatgggtaca ttgagttttc aatcttttgg tagcttagct 6660 aacgccaatg gtgccactgg agatattgaa attatcgtct atgcttgggc agaagatatt 6720 gaggtagcag gacccacagt agctttagct gttcaagcga gggatgaata tcaggatgat 6780 ggtgttgttt caaagccagc ttcagctata gcgagagcaa cttcgatgct tagcagtgtg 6840 cctgtcattg ggccgtttgc cactgctaca tcacacgctg ctgaagccgt atcaaaaatt 6900 gcgtctttgt ttggatatac aaatacgccg gttattgatg atattcatca atttcaacca 6960 gcaccttttc caaacttggc ctctactgat attggcatgc caattgataa gcttacactc 7020 gatgcgaaga acgaattgtc tattgacccg tcaatagccg gatctacacc acaggatgaa 7080 cttattatta gcaatttctg tgctcgtgag gcatggatat tcgagaacac atggacaagt 7140 gctgatactc tcaatactgg tctcttttat gctaaagtgt ctcctgcatt atacaccact 7200 gatgcggttg gacccacttc tatcttgtgg aatacaccta tgtcacatgt ttctgatatg 7260 tttgaatatt ggcgaggaga cattattttc cgatttaagt ttatttgctc aaaatatcac 7320 cgtgggagag ttcgaatcaa ttgggatccg catggagata ttggcacagc tggagattat 7380 accactgaaa catacacaaa aattgtcgat attaccgacg agacagatgt agagtttcgt 7440 gtaccgtaca cacaagctct ggcatattta cgtatattgc cgggaaaaac taagcatttt 7500 gctgctgcat ctacctctac aacaaacgga acttacttca atggtgtgat aactgtacgg 7560 gttttaaatc gtcaaacctc accgataact tctgctgaca ttcgtatgtt ggtgtttgtc 7620 aaaggtgctg acaatcttga gtttgctgct cctaaggaaa ttgacacgtc atattctcct 7680 tattcagttc aatcctatga ttctcgtatg gatattgata acactatgca caatatgggt 7740 gttaaaccat caagtgcgga tccaaatata aatttggtat attttggtga gtcaatcgta 7800 tctcttcgtc aacttatgcg ccgccagagt ctctataaaa gactcgtggc agctgctggc 7860 tcggccattg acacgattta cctgactaca ttcaagttgg caagactgcc attatatccg 7920 ggatttgatg tcaatggtat agactccgcg ataggagtcg tctctggttt gccagagcct 7980 tacaattaca ccaattggct tcccattact tgggttggtc agtgttttgt aggcgtgaga 8040 ggttcagttc tctattctgt caatgccaat ggccaacaga atagtaaaac tgtgattcgt 8100 gctcgtgaat ttggtacgca caactcttcg aatgcagcat tgtcacaatc ttatggtggt 8160 aacggggctt tgaagcaatc aattcggatt tctcaattag cagggaattc tggcatgacg 8220 atgactaacc aggaaactca agctggcatt acagctatgc taccaatgta caccaatgtt 8280 aaattcatcg tgaattcgcc aagtacgcga agtgttggta atgatataga tggttctctt 8340 catgatgcca tgagagtgca gactctgtac cagactgaga ccaattcttt caacgatact 8400 ttcgttgatc tgtattgtgc tgctggtacg gacatgagtt tcgtgttctt cattaatgtg 8460 cctgctgtga atatttacaa ttcggtccca acaccattac cttgatgatt ctcaattggt 8520 tcctaaaagc ctcaacttag tttgttgggg ctttgtccgg aatgacgtta aactagtact 8580 tttagtacca tccgaaatga tgttaaacta aagtccgtaa tgacttttta aactataaaa 8640 cacagtggtc agtgctgtgt ctactatctt tatagtagtt tgaccctatg cttggcatgg 8700 agacgctata cttagttgta ttgcttcacg aatggttttg taaccacgta agtctcatgc 8760 tatcatgggg tttgcgtggg gaaatttttt catcacggaa gttgacgtct ttatgttaag 8820 tatcggaata gctgatacta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 8880 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa 8926 //