ID EF197941; SV 1; circular; genomic DNA; STD; VRL; 2724 BP. XX AC EF197941; XX DT 03-MAR-2007 (Rel. 90, Created) DT 03-MAR-2007 (Rel. 90, Last updated, Version 1) XX DE Pumpkin yellow mosaic Malaysia virus isolate MP1 segment DNA A, complete DE sequence. XX KW . XX OS Pumpkin yellow mosaic Malaysia virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2724 RA Tsai W.S., Shih S.L., Roff M.M.N., Green S.K.; RT "Molecular Characterization of Two Cucurbit-infecting Begomoviruses in RT Malaysia"; RL Unpublished. XX RN [2] RP 1-2724 RA Tsai W.S., Green S.K., Roff M.M.N.; RT ; RL Submitted (23-DEC-2006) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, P.O. Box 42, Shanhua, Tainan, RL Taiwan 74199, R.O.C. XX DR MD5; 18f186c196e396c1e7b71f593aeeb942. XX FH Key Location/Qualifiers FH FT source 1..2724 FT /organism="Pumpkin yellow mosaic Malaysia virus" FT /segment="DNA A" FT /isolate="MP1" FT /mol_type="genomic DNA" FT /country="Malaysia:Negeri Sembilan" FT /isolation_source="diseased pumpkin" FT /collection_date="2001" FT /db_xref="taxon:420684" FT CDS 40..456 FT /codon_start=1 FT /product="precoat protein" FT /db_xref="GOA:A3RDP9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A3RDP9" FT /protein_id="ABN80356.1" FT /translation="MKFTLHGLFITWGPLNRLPHQVLIHTMWDPLLHEFPESVHGLRCM FT LAVKYLQEVEKTYSPDTVGYDLVRDLILVLRAKNYVEATSRYYHFNSRVEGTPTSQLRQ FT PLCFPCSCPHCPRHKGKGLDKQADEQKTQDVQNV" FT CDS 278..1048 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:A3RDQ0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A3RDQ0" FT /protein_id="ABN80357.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAVVPIARVTKGKAWT FT NRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVLCISDVTRGTGLTHR FT VGKRFCVKSVFVLGKIWVDENIKTKNHTNSVILFLVRDRRPTRTPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVIRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1045..1455) FT /codon_start=1 FT /product="C3 protein" FT /db_xref="GOA:A3RDQ1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A3RDQ1" FT /protein_id="ABN80358.1" FT /translation="MITDSRTGEYITVDRAESGVYIWEVPNPLYFKILKHDIRPCLTEH FT DIIKMHVMFNHKLRKALGLHKCVLMFQIWTGLRPPTGIFLRVFKTQVLKYLDMLGVISI FT YNVLRAVYHVLDDVLEKTIDVWTTYNVKLNIY" FT CDS complement(1190..1594) FT /codon_start=1 FT /product="C2 protein" FT /db_xref="GOA:A3RDQ2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A3RDQ2" FT /protein_id="ABN80359.1" FT /translation="MQSSSQSKNHSIPVAKKSLPHNKKKNIRRRRIDLPCGCSYYMSIN FT CHDHGFTHRGVHHCGSSREWRIYLGSSKSPLFQNIETRHQTLSHGTRHNQNACNVQPQT FT AESTGTSQMCSNVPDLDGLTPSDWDFLESL" FT CDS complement(1497..2582) FT /codon_start=1 FT /product="replication-associated protein C1" FT /db_xref="GOA:A3RDQ3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A3RDQ3" FT /protein_id="ABN80360.1" FT /translation="MPRAGRFSIKAKNYFLTYPQCSLTKEEALSQLKPLQTPTNKKYIK FT ICRELHEDGSPHLHVLIQFEGKCNCTNNRFFDLVSPTKSTHFHPNIQGAKSSSDVKSYL FT DKDGDTLDWGEFQIDGRSARGGCQNSNDACAEALNAGSKEAALSIIREKLPKDYIFQFH FT NLNSNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVGCSAARPNRPISIVIEGE FT SRTGRTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLEEDKNSALKQWALKNAIFLTIKEPL FT YSGREKIATAQQEEEYQAQTN" FT CDS complement(2168..2425) FT /codon_start=1 FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A3RDQ4" FT /protein_id="ABN80361.1" FT /translation="MGALISMCSFNSKANATARITDSSTWYPQPSLHISIRTFRELNPA FT PTSNPTWTRTETPSTGENSRSTVEVLEEGARILTTHAQKP" XX SQ Sequence 2724 BP; 734 A; 569 C; 607 G; 814 T; 0 other; accggatggc cgcgcttttt ttatgtgggc cctcgaccaa tgaaattcac gctacatggc 60 ttatttatta catggggacc attaaataga cttcctcacc aagttttgat ccacaccatg 120 tgggatccac ttctgcacga atttcctgaa agtgttcatg gtctaaggtg catgctagcg 180 gtgaaatatc ttcaggaagt ggaaaaaaca tattctccgg acacagtcgg ctacgatctt 240 gtccgcgatc ttattcttgt tctccgcgca aagaactatg tcgaagcgac cagccgatat 300 tatcatttca actcccgcgt cgaaggtacg ccgacgtctc aacttcgaca gcccctatgt 360 ttcccgtgca gttgtcccca ttgcccgcgt cacaaaggga aaggcctgga caaacaggcc 420 gatgaacaga aaacccaaga tgtacagaat gtatagaagt cccgacgtgc caaggggctg 480 tgaaggccct tgtaaagttc aatcctttga atctaggcac gatgtctctc atattgggaa 540 ggtattgtgt atcagtgatg ttacacgagg aaccggactc acacatcgcg ttgggaagcg 600 attctgtgtg aaatctgttt ttgttttggg aaagatatgg gtggatgaaa atatcaagac 660 taaaaatcac actaatagcg ttatattgtt tttggttcga gaccgtcgtc ctacaagaac 720 tccacaagat tttggggagg tttttaatat gttcgacaat gaaccgagca ctgcaacggt 780 gaagaacatg catcgtgatc gataccaagt gatacgcaaa tggcatgcca ctgtgacggg 840 aggaacatac gcatcaaggg agcaagcatt agttaggaag tttgttagag tcaataatta 900 tgttgtctac aatcaacaag aggccggcaa gtatgagaat catactgaaa atgcattaat 960 gttgtatatg gcctgtactc acgcatcgaa ccctgtatac gcgactttga aaattcggat 1020 ctatttttat gattcggtaa caaattaata tatattcaat ttcacattat atgttgtcca 1080 tacatcaatt gtcttttcca atacatcgtc taaaacgtga taaactgctc ttaatacatt 1140 gtaaatacta atcaccccta acatatccaa gtacttaagg acttgggtct taaagactct 1200 caagaaaatc ccagtcggag ggcgtaagcc cgtccagatc tggaacatta gaacacattt 1260 gtgaagtccc agtgctttcc gcagtttgtg gttgaacatt acatgcattt tgattatgtc 1320 gtgttccgtg agacaaggtc tgatgtcgtg tttcaatatt ttgaaataga ggggatttgg 1380 aacttcccag atatatacgc cactctctgc tcgatccaca gtgatgtact cccctgtgcg 1440 tgaatccgtg atcatggcaa tttattgaca tgtaatacga gcatccgcac ggtagatcaa 1500 ttcgtctgcg cctgatattc ttcttcttgt tgtgcggtag cgattttttc gcgaccggaa 1560 tagagtggtt ctttgattgt gaggaagatt gcattcttta atgcccactg cttcagtgct 1620 gaattcttat cctcttccaa gtactcttta tatgatgacg ttggtcctgg attgcatagg 1680 aagattgtcg ggataccacc tttaatttga attggctttc cgtacttcgt gttgctttgc 1740 cagtcccttt gggcccccat gaattctttg aaatgcttta aatagtgggg gtcgacgtca 1800 tcaatgacgt tgtaccatgc atcgttgctg tacacctttg gactcagatc tagatgaccg 1860 cacagataat tatgtgggcc caatgaacga gcccacattg tccttcctgt acgactctca 1920 ccctctatga caatacttat gggtctattt ggccgcgcag cggaacaccc cacgttctca 1980 gaaacccact cttcaagttc ttctggaact tgatcgaatg aagaagaaag aaaaggacaa 2040 acaaaaacct ctaaaggagg tgcaaaaatc ctatctaaat tagaatttaa attatgaaat 2100 tgaaaaatat aatcttttgg gagtttctcc cttattatac ttagtgctgc ttctttggaa 2160 cctgcgttta aggcttctgc gcatgcgtcg ttagaattct ggcaccctcc tctagcactt 2220 cgaccgtcga tctggaattc tccccagtcg agggtgtctc cgtccttgtc caggtaggat 2280 ttgacgtcgg agctggattt agctccctga atgttcggat ggaaatgtgt agacttggtt 2340 ggggatacca agtcgaagaa tctgttattc gtgcagttgc atttgccttc gaattgaatg 2400 agcacatgga gatgagggct cccatcttcg tgcagctctc tacagatttt gatatatttt 2460 ttatttgttg gggtttgtag aggttttaat tgggaaagtg cttcttcctt ggtgagggag 2520 cactgtggat aagtgagaaa ataatttttg gctttaatag aaaaacgtcc ggctctaggc 2580 attttggaat tggggggcac tctaagtctc tgcaatcggg ggaactgggg ggcaatttat 2640 atgtgccccc caaatggcaa aatagtaatt atgtaaataa ttactttaat tcaaaatgaa 2700 taaagcggcc atccgtataa tatt 2724 //