ID   EF197940; SV 1; circular; genomic DNA; STD; VRL; 2737 BP.
XX
AC   EF197940;
XX
DT   03-MAR-2007 (Rel. 90, Created)
DT   03-MAR-2007 (Rel. 90, Last updated, Version 1)
XX
DE   Squash leaf curl China virus isolate MC1 segment DNA A, complete sequence.
XX
KW   .
XX
OS   Squash leaf curl China virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2737
RA   Tsai W.S., Shih S.L., Roff M.M.N., Green S.K.;
RT   "Molecular Characterization of Two Cucurbit-infecting Begomoviruses in
RT   Malaysia";
RL   Unpublished.
XX
RN   [2]
RP   1-2737
RA   Tsai W.S., Green S.K., Roff M.M.N.;
RT   ;
RL   Submitted (23-DEC-2006) to the INSDC.
RL   Virology, AVRDC-The World Vegetable Center, P.O. Box 42, Shanhua, Tainan,
RL   Taiwan 74199, R.O.C.
XX
DR   MD5; 58207e16bdc0c53d36ac526470f8affa.
DR   EuropePMC; PMC5473258; 28619789.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2737
FT                   /organism="Squash leaf curl China virus"
FT                   /segment="DNA A"
FT                   /isolate="MC1"
FT                   /mol_type="genomic DNA"
FT                   /country="Malaysia:Negeri Sembilan"
FT                   /isolation_source="diseased cucumber"
FT                   /collection_date="2001"
FT                   /db_xref="taxon:223323"
FT   CDS             42..458
FT                   /codon_start=1
FT                   /product="precoat protein"
FT                   /db_xref="GOA:A3RDP5"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:A3RDP5"
FT                   /protein_id="ABN80352.1"
FT                   /translation="MKFTLHGLFMTWGPLNRLPHQVLIHNMWDPLLHEFPESVHGLRCM
FT                   LAVKYLQEVEKTYSPDTIGYDLVRDLILALRAKNYVEATSRYYHFNSRVEGTPTSKLRQ
FT                   PLCFPCSCPHCPRHKGKGLDKQADEQKTQDVQNV"
FT   CDS             280..1050
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:A3RDP6"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:A3RDP6"
FT                   /protein_id="ABN80353.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAVVPIARVTKGKAWT
FT                   NRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCISDVTRGTGLTHR
FT                   VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGTPQDFGEVFNMFDNEP
FT                   STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQETGKYENH
FT                   TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   CDS             complement(1499..2584)
FT                   /codon_start=1
FT                   /product="replication-associated protein C1"
FT                   /db_xref="GOA:A3RDP7"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:A3RDP7"
FT                   /protein_id="ABN80354.1"
FT                   /translation="MAPPRPFKINAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIK
FT                   ICRELHEDGSPHIHVLIQFEGKFQCKNIRFFDLVSPSRSAHFHPNIQGAKSASDVKQYI
FT                   DKEGDVLEWGVFQIDGRSARGGQQTANDAYARALNTGNKEDALKVLKELAPKDYVLQFH
FT                   NMNSNLDRIFPPRAEVYVSPFSISSFDRVPQELVDWVSANVGCSAARPNRPIGIVLEGD
FT                   SRTGKTAWARSLGPHNYLCGHLDLSPRVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWALKNAIFIRIEEPL
FT                   YSGRESIATAEEEEEHQAKTN"
FT   CDS             complement(2251..2427)
FT                   /codon_start=1
FT                   /product="C4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:A3RDP8"
FT                   /protein_id="ABN80355.1"
FT                   /translation="MGLRISTFLSSSKESSNAKISDSSTWCPQVGQHISIRTFRELNRH
FT                   RTSNNTLTKKVTC"
XX
SQ   Sequence 2737 BP; 744 A; 599 C; 591 G; 803 T; 0 other;
     accgaatggc cgcgcgattt tttaatgtgg gccctcgacc aatgaaattc acgctacatg        60
     gcttatttat gacatgggga ccattaaata gacttcctca ccaagttttg atccacaaca       120
     tgtgggatcc acttctgcac gaatttcctg aaagcgttca tggtctaagg tgcatgctcg       180
     cggtgaaata tcttcaggaa gtggaaaaaa catattctcc ggacacaatc ggctacgatc       240
     ttgtccgcga tcttattctt gctctccgtg caaagaacta tgtcgaagcg accagcagat       300
     attatcattt caactcccgc gtcgaaggta cgccgacgtc taaacttcga cagcccctat       360
     gtttcccgtg cagttgtccc cattgcccgc gtcacaaagg gaaaggcctg gacaaacagg       420
     ccgatgaaca gaaaacccaa gatgtacaga atgtatagaa gtcccgacgt gccaaggggc       480
     tgtgaaggcc cttgtaaagt tcaatccttt gaatctaggc acgatgtctc tcatattggg       540
     aaggtaatgt gtatcagcga tgttacacga ggaaccggac tcacacatcg cgttgggaag       600
     cgattttgtg tgaaatctgt ttatgttttg ggaaagatat ggatggatga aaatatcaag       660
     actaaaaatc acactaatag cgtcatgttt tttttggttc gagaccgtcg ccctacagga       720
     actccacagg attttgggga ggtttttaat atgttcgaca atgaaccgag cactgcaact       780
     gtgaagaaca tgcatcgtga tcgataccaa gtcctgcgca aatggcatgc cactgtgacg       840
     ggaggaacat acgcatcaag ggagcaagca ttagttagga agtttgttag agtcaataat       900
     tatgttgttt acaatcaaca agagaccggc aagtatgaga atcatactga aaatgcatta       960
     atgttgtata tggcctgtac tcacgcatcg aaccctgtat acgcaacttt gaaaatccga      1020
     atctatttct atgattcggt aacaaattaa tatatattta atttcacatc atatgtcgtc      1080
     catacatcaa ttgtcttttc taatacatcg tccaatacat gataaactgc tcttattaca      1140
     ttgtaaatgg aaatcacccc taacatatcc aagtacttaa cgacttggtt cttaaagact      1200
     ctcaagaaaa gcccagtcgg agggcgtaag cccgtccaga tctggaacat tagaacacat      1260
     ttgtgaagcc ccagtgcttt cctcaggttg tggttgaaca ttatatgcac tttgattatg      1320
     tcgtgttcct ggagacaagg tctgatctcg tgtttcaata ttttgaaata gaggggattt      1380
     tgaatttccc agatatacac gccactctct gctcgatccg cagtgatgta ctcccctgtg      1440
     cgtgaatccg tgatcatggc aatttattga catgtaatac gagcacccgc acggtagatc      1500
     aattcgtctt cgcctgatgt tcttcttctt cttctgcggt agcgatgctt tcgcgaccgg      1560
     aatagagtgg ttcttcgatt ctgatgaaga ttgcattctt caatgcccac tgtttcagtg      1620
     ctgcattttt ttcttcatcg agatattctt tataactgct gttgggtcct ttattgcaga      1680
     ggaagatggt gggaatccca cctttaatca tgactggctt tccgtacttc gtgttacttt      1740
     gccagtctct ttgggccccc atgaattctt taaaatgctt tagatagtgg ggatcaacgt      1800
     catcaatgac gttgtaccaa gcatcattat tgtacactct agggctcaga tccaggtggc      1860
     cgcacaagta attgtgcggt cccaaagaac gcgcccacgc agttttaccc gttctactat      1920
     caccctctaa aactattcct atgggtctat tcggccgcgc agcggaacac cccacgttag      1980
     ctgaaaccca atcgacgagt tcttgcggaa ctctgtcgaa ggatgaaatt gaaaaaggag      2040
     aaacatacac ctcagcccga ggtggaaaaa tgcgatctag atttgaattc atattatgaa      2100
     attgcaaaac ataatctttg ggagctaatt ccttcaacac tttcaatgca tcttccttat      2160
     tccctgtgtt cagtgccctt gcatatgcgt cgttggctgt ttgctgacct ccacgagcag      2220
     atcggccatc gatctggaag acaccccatt ctaacacgtc accttctttg tcaatgtatt      2280
     gtttgacgtc cgatgccgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac      2340
     ttggggacac caagtcgaag aatctgatat ttttgcattg gaactttcct tcgaactgga      2400
     taagaacgtg gatatgcgga gacccatctt cgtgcaactc tctacaaatt ttgataaatt      2460
     tcttcgaagt tggcgtttct agggtttgca attgggaaag tgcctcttct ttggttagag      2520
     agcactttgg atatgtgagg aaatagtttt tggcatttat tttgaagggc ctaggcggag      2580
     ccatcaaaac gctcgttttg gatcggtgtc ccttcaaaag tatggtatat cggtgtatgg      2640
     agtctcatat atagtctgga caccaaatgg caaaatggta attatgcaaa taattacttt      2700
     aattcaaaat gtaaaaagcg gccattcgta taatatt                               2737
//