ID EF195384; SV 1; linear; genomic RNA; STD; VRL; 8305 BP. XX AC EF195384; XX DT 22-JUN-2008 (Rel. 96, Created) DT 29-DEC-2008 (Rel. 98, Last updated, Version 2) XX DE Steller sea lion vesivirus V1415, complete genome. XX KW . XX OS Steller sea lion vesivirus OC Viruses; Riboviria; Caliciviridae; Vesivirus; unclassified Vesivirus. XX RN [1] RP 1-8305 RX DOI; 10.1016/j.virusres.2008.08.002. RX PUBMED; 18765261. RA McClenahan S.D., Burek K.A., Beckmen K.B., Knowles N.J., Neill J.D., RA Romero C.H.; RT "Genomic characterization of novel marine vesiviruses from Steller sea RT lions (Eumetopias jubatus) from Alaska"; RL Virus Res. 138(1-2):26-35(2008). XX RN [2] RP 1-8305 RA McClenahan S.D., Burek K.A., Beckmen K.B., Knowles N.J., Romero C.H.; RT ; RL Submitted (20-DEC-2006) to the INSDC. RL Infectious Diseases and Pathology, University of Florida, 2015 SW 16th Ave, RL Building 1017, Rm V2-234, Gainesville, FL 32610, USA XX DR MD5; 097b3c1baa40ccedf5c16ccebe9a1306. DR EuropePMC; PMC3519611; 23190937. DR EuropePMC; PMC5312078; 28196955. XX FH Key Location/Qualifiers FH FT source 1..8305 FT /organism="Steller sea lion vesivirus" FT /lab_host="MDCK cells" FT /strain="V1415" FT /isolate="SSL2004-250F" FT /mol_type="genomic RNA" FT /country="USA:Alaska, Cape Horn Rocks" FT /collection_date="2004" FT /db_xref="taxon:436911" FT CDS 20..5665 FT /codon_start=1 FT /product="non-structural polyprotein" FT /note="encodes helicase, Vpg, protease, and RNA polymerase" FT /db_xref="GOA:B3SGK4" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR016024" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B3SGK4" FT /protein_id="ABP88257.1" FT /translation="MAQTLSKISNKEDSSLGQWPRRFKPHQPIPTWMVRCGLPFHDLRR FT GREPVRASPQAKRVRTPTPYPSHLKPAASAAVRGGTNPSHLKPAVHAVVRSGTNPCCEV FT KDGGVVRSCKNCNLKPAHESKAVSFSLPSTDGPHGNEPEFIAEACPSCVLYDTCPNCTS FT KAINDDGSTDGTIPSWDQIETTPAFLSLLSNTDEEMSADELTNLAAHLRKAFETGSHPA FT NVDYSKDQLQGLLEMAEAALPPARRQTLPFYQQRLEARRTWREKIFNQPIDEINKILTT FT SKDRFQRCAAWKVVLEKAILAKEYGEEALQYAIQALKSINSFDVNLVLKMAVATFIDHI FT RLMTVDNPDLVSYIPKLIVKLKPLTLKMIIDNHENTKEGWLITLTSLAELYGMVEVAID FT FVPTVVGNMFDLLMKTTSKMYSMFKSIVLATFTSESLDFTNPFWYAIAAILCFLITGAI FT PHNGKMKIIKNILSNATGVVAGIKAIQSLAAMFSTWSNERLVNDLSSRVIAITELNNPT FT ITADIDAVINLQRLAEVLRDEVKSHTLNPLMQPYTPILRNIMSALDNVISCCTRRKAIA FT VKRAAPVAVILTGPPGCGKTTAAFALAKRLSQQKPSIISLDVDHHDTYTGNEVCIIDEF FT DSSDKVDYANFVVNMVNTNPMVLNCDLIENKGKTFTSKYVIMTSNTETPVKPTSKRAGA FT FYRRVMIVDVTNNAVEKWKADNLGKPVPKWCFNKDFTHLISHSRGTEAYCKEYVLDPTG FT RNHQSRRAPLPHNITLEQLAQKMVVLHTTNTSEFVTQAGDVPVFGFVCQNNEIDTVYNT FT ACCRARPGMAQISICIKGMVRTAHENSGCGAHVHVISREDNFRGKAFTVNRSRLESVPH FT LEGDSFRRSLGVVMSDKDVTTMFYYIKGKVINDQVNLTELPANQHVVTVHNVYDMAWAL FT RRHLKWSGQWQLIKAAYEIMCYPDLAACALRNWMDSTDFSEDHVVTQFVAPGGTIILES FT CYGARMWATGQRLIRAGGITEAGGPQGGVRFAGLGARNVPWSEILREFMTLISHIWSQI FT KGATVVLTALTLYLKRFRPRIEAKGKNKNKGPRKNTGVALTDDEYDEWRQYKTEKKLDL FT TVEDFLQLRHRAAMGADDSDAVKFRFWYSERQRNYHDLEDVTIIGRGGVKRELIRKGPL FT RPRGNDYYDEPDDWYSEGVIDGVTHKNAIVSVDDVDGMHKGYAIHIGHGVYISLKHVVT FT GNAKILSEDPKDLKINGELATFRLNNILPTAVPVGTSKPIKDPWGNPVSTDWQFKNYNT FT TSGNIYGACGSSCSLTRQGDCGLPYVDDHGVVVGLHAGSGGDKCPSRKLIVPYVKVDMR FT IRDTCTKEFFKDNKPTISYKGLLVKETGDPRTIMKGTRLHVSPAHVDDYEECTHQPASL FT GAGDPRCPISLTGIMVNNLQPYTEASPGPDTATLNRVSKMLISHMEGYVPKIHKTEEDM FT ISAFYMLNHDTSCGPYIGGRKKDHVQGWRVGQKPSWTSLAQSGIRAKLGLALPHEYALG FT LKDELRPKDKVAVGKRRLIWGCDVGVSTVCAAAFKRVSESIMANHALGFIQVGINMDGP FT AVEDLFKRLERSKHDRYCVDYSKWDSTQPPKVTSQSIDILRHFTDKSPIVDSACATLKS FT NPIGIFNGVAFKVAGGLPSGMPLTSIINSLNHCLMIGSAVVKALEDSGIQVTWNIFDSM FT DLFTYGDDGVYIVPPLISSVMPKVFAYLRQFGLKPTRTDKTDAEITPIPADEPVEFLKR FT TIVRTENGIRALLDKSSIIRQFYYIKAENTENWTTPPKKIDTSSRGQQLYNACLYASQH FT GEEFYTPKVVPLIKRAIEYEGLHIEVPEFHQAVAAYNGYFNGTEDQPNQIAFASGGIGL FT SGEVFEN" FT CDS 5671..7797 FT /codon_start=1 FT /product="capsid" FT /note="ORF 2" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:B3SGK5" FT /protein_id="ABP88258.1" FT /translation="MATTHTLLSFDDLEFLLHKKDLTDLYGERCGTLNLVINPYDLFLP FT DDLDDCWCDDPFNCCFTDVYASIGTEYSYIDPPELIHEEHRATNGTWPDGTPCEPILPP FT FTILGTHHYYATKPGEVVSGILSKLGSSWDPSLRSTANVEANFTFRAESDGPGNSDIVT FT EEQGTVVQQQPAPAPAALATLATASTGKSVEQEWMTFFSYHTSINWSTVESQGKVLYSQ FT ALNPSINPYLDHIAKLYSSWSGGIDVRFTVSGSGVFGGKLAALLVPPGVEPIESVSMLQ FT YPHVLFDARQTEPVIFTIPDIRKTLFHNMDETDTTKLVIMVYNELINPYENTVEGKTTC FT SITVETRPSADFCFALLKPPGSLIKHGSIPSDLIPRNSAHWLGNRWWSTISGFSVQPRV FT FQSNRHFDFDSTTTGWSTPYYVPIEIEIEAKTGGDNYWFHVRDTEKALVPGLPDGWPDT FT TVPESTSASNGNFDYREGFHDTKTKVVDPTKNETHFKGAYICGTLSTVTLTNDTKVKAD FT AQKKSQTMYITIADYSSNRVSPQHKISSRKLLVYFDGPQHDETVHATLSPLGFVMVDGQ FT PIGSDSSKVVRIATLPEAFTQGGNYPIFYINKVKVGYFDKTTTDCYNSQILMTTQKLAE FT GNYNLPPDSLAVYRITDSSSQWFDVGINRDGFSYVGLSDLPVLEFPLTSTFMGVQLARV FT KLASKVRVNRTSIK" FT CDS 7794..8126 FT /codon_start=1 FT /product="unknown" FT /note="ORF 3" FT /db_xref="InterPro:IPR007996" FT /db_xref="UniProtKB/TrEMBL:B3SGK6" FT /protein_id="ABP88259.1" FT /translation="MNYANFGLDLLNSVANAAIEGKKLDLASQGLQLKSRVLNTERDFN FT YARLAFERYKFDTNNDLKIYGDALRVQALRAAGLRINPYSNGRQIYQDEADLANLHSYY FT SFYKTD" XX SQ Sequence 8305 BP; 2323 A; 2189 C; 1845 G; 1948 T; 0 other; gtaaatgaga atttgagcca tggctcaaac gctctcaaaa atctctaaca aagaagattc 60 ctctctaggc caatggccta ggaggttcaa accccaccaa cccatcccaa cgtggatggt 120 gcggtgtggg cttcccttcc acgacttacg tcgtggtcgg gaacctgttc gtgcctcgcc 180 tcaagcgaag cgcgtcagga cacctactcc ctaccccagc catctcaaac ctgcggcatc 240 tgccgcagtt aggggtggca ccaaccctag ccatctcaaa cctgcagtac atgctgtagt 300 taggagtggc accaacccct gctgtgaagt taaggacgga ggtgtagtta ggagttgcaa 360 gaactgcaat ctcaaacctg cacacgaatc caaggctgtc agcttctccc tcccctcaac 420 ggacggacca cacggtaacg aacctgaatt catcgccgag gcatgcccca gttgtgtact 480 ctacgacaca tgtccgaact gcacgtcaaa ggcaatcaac gatgatggat cgactgacgg 540 gacaattcct tcctgggatc agattgaaac aacacccgca ttcctttcac tgctctcaaa 600 tacggacgag gaaatgtcag cagatgaact aaccaacctg gctgcccatc tgcgaaaggc 660 tttcgaaacc ggatcacacc ccgcaaacgt cgactactcc aaggatcaat tgcaaggact 720 actggaaatg gccgaggctg cactaccacc ggcgaggagg caaaccctac cattctacca 780 gcaaaggctt gaagcacgcc gcacgtggcg tgaaaagatc tttaaccagc ccatcgacga 840 aatcaacaag atcctaacca catcgaagga tcgcttccag cgctgtgctg cgtggaaagt 900 cgtattggag aaggcaattc tcgccaagga atacggcgaa gaagccctcc agtacgcaat 960 acaagcactc aaaagtatca actcattcga tgtcaatcta gtgttgaaaa tggctgttgc 1020 gacgttcatc gaccacatta ggttgatgac cgttgacaac ccagatttgg tgtcatacat 1080 tccaaaattg attgtcaaac tgaaaccatt aacactgaag atgataattg acaaccatga 1140 aaacactaaa gaaggttggc tcatcacact aacgagcctt gcggagctct acggtatggt 1200 tgaagtcgca atcgacttcg tcccaactgt tgttggcaac atgtttgacc tcctcatgaa 1260 aaccacatcc aagatgtata gtatgtttaa atcaattgtg cttgccacgt tcacatctga 1320 gtcacttgat ttcacaaatc cattctggta tgccattgct gcaatacttt gcttcctgat 1380 aacaggggca atccctcaca atggcaagat gaagatcatc aagaacatcc tgtccaacgc 1440 aacgggcgtt gttgcgggaa taaaagccat ccaaagcctt gctgcgatgt tttcaacatg 1500 gtcaaacgaa aggcttgtga acgatctgtc atccagagtc atcgcaatca ccgagttgaa 1560 caatcccaca atcacagctg acatcgatgc agtgatcaac ctacagagat tggccgaggt 1620 gcttcgcgac gaagtgaagt cacacactct caacccactc atgcagcctt acacaccaat 1680 ccttagaaac ataatgtctg cgctagacaa cgtaatttca tgttgcacta ggcgcaaagc 1740 aatcgctgtc aaacgagccg ctccagttgc tgttatcctg accggacccc ccggttgtgg 1800 gaaaacgaca gcagccttcg ctcttgccaa gcggttgtcc caacaaaaac catcaatcat 1860 atccctcgat gtcgatcacc acgacacgta tacagggaat gaggtctgca tcatcgatga 1920 gtttgactcg tctgacaagg ttgattacgc aaattttgtg gttaacatgg taaacactaa 1980 cccaatggtc ctaaattgtg atctgattga gaacaaaggc aaaactttca cctcaaaata 2040 tgtgatcatg acatcaaaca ctgagacacc tgtcaaacca acatcaaagc gtgccggtgc 2100 gttctaccgc cgcgtcatga ttgttgatgt tacaaataat gcggtggaaa agtggaaggc 2160 cgacaatctt ggaaaacctg tccccaaatg gtgcttcaac aaggacttca cccatctaat 2220 ctctcactct cgggggaccg aggcatactg caaagagtac gtacttgacc caaccggtag 2280 gaaccaccaa tcacgcagag ctcctctacc acacaatatc actcttgagc aacttgcaca 2340 aaagatggtt gttctacaca caacaaacac cagcgaattc gttactcaag ctggtgatgt 2400 cccagtcttt ggatttgtgt gccaaaacaa tgaaattgac actgtctaca acactgcttg 2460 ctgccgtgca aggccaggta tggcgcaaat ttcaatttgt atcaagggca tggtaagaac 2520 tgcacacgag aacagtgggt gtggggccca tgttcacgtg atctcccgag aagataactt 2580 cagaggaaag gcattcacag tcaacagatc taggcttgaa tctgttcccc atctcgaggg 2640 tgactctttc agacgatccc tcggcgttgt catgtctgac aaggacgtaa caaccatgtt 2700 ctactacatc aaggggaaag tgatcaacga tcaggtgaac ttgactgaac tacccgccaa 2760 tcaacacgtg gtgaccgttc ataacgtgta tgacatggcc tgggctcttc ggaggcacct 2820 gaagtggtct ggacagtggc aactcatcaa agcagcatat gaaatcatgt gttacccaga 2880 cctagctgct tgtgccctca ggaattggat ggactcaacc gacttctccg aggaccatgt 2940 tgtcacacag ttcgtagccc ctggtggaac catcatcctg gaatcctgct acggcgcacg 3000 tatgtgggcc acaggccagc gcctcatccg cgctggtggg atcacagagg ctggtggtcc 3060 acaaggggga gtcagatttg ctggccttgg tgcccggaat gtaccctgga gtgaaattct 3120 cagagaattc atgaccctaa tctcacacat ttggtcccaa attaaaggag cgactgtagt 3180 gctcacagca ctaacactct atctcaaaag attcagacca agaattgaag ccaagggtaa 3240 gaacaagaac aagggcccca gaaagaacac tggtgtcgca ctcacggatg acgagtatga 3300 cgagtggaga cagtacaaaa ctgagaagaa gctcgacctc acggttgagg actttctcca 3360 gctcagacac cgggctgcga tgggagctga tgactccgat gccgtcaaat tcaggttttg 3420 gtactcggaa agacaaagaa attaccacga tttggaagat gtcaccataa ttggccgtgg 3480 tggcgtgaaa cgtgaactca tccgcaaagg tccactgcgt ccccgcggga atgactacta 3540 cgacgagcca gatgattggt actcggaagg ggtcattgat ggcgttaccc acaagaacgc 3600 tatcgtcagt gtcgatgatg tggacggtat gcacaaaggg tatgccatac acattggaca 3660 cggagtttac atttcactga aacatgttgt cacaggcaat gcaaaaatat tgtctgagga 3720 cccaaaagat ctgaagatca atggtgaatt ggcaactttt agattgaaca atattctccc 3780 aacagctgtt cctgtcggaa cctccaaacc catcaaagat ccatggggca accccgtctc 3840 cactgattgg caattcaaga attataacac cacctcagga aacatttatg gagcctgtgg 3900 ctcgtcgtgt tcactgacac gtcaaggaga ctgcggtctc ccatacgttg atgatcacgg 3960 tgtagtcgtg gggcttcatg ccggatccgg aggcgacaag tgcccgtctc ggaagctcat 4020 tgtcccttac gttaaggttg acatgagaat ccgtgacacg tgcaccaaag aattcttcaa 4080 agacaacaag ccaacaatct cctacaaagg gctccttgtc aaagaaaccg gagacccaag 4140 aaccatcatg aaaggcacca gactccacgt gtcgccagca catgttgacg actacgagga 4200 gtgcacccac caacctgcat cacttggtgc tggggatcca cggtgtccca tatccctcac 4260 tgggatcatg gtcaacaacc tccaaccata cactgaggct tcacctggac ctgacactgc 4320 aacactcaac agggtttcaa agatgttgat cagtcacatg gaaggatacg tgccaaaaat 4380 tcacaaaact gaggaagaca tgatctccgc gttctacatg ctcaaccatg acacatcatg 4440 cggtccctac atcggtggac gcaagaaaga ccacgttcaa ggatggcgtg ttggacaaaa 4500 accttcttgg acctccttag ctcaaagtgg aatccgtgca aagctcggtc tcgccctccc 4560 acacgagtac gcccttggac tcaaggacga actccgaccc aaagacaagg tcgcggttgg 4620 gaagcgccga ctcatctggg gatgcgacgt tggtgtcagc acagtctgcg ctgctgcctt 4680 caaacgcgtc tctgagtcaa tcatggccaa ccatgccctc ggctttatcc aagtggggat 4740 aaacatggat ggtcccgccg ttgaggacct cttcaaacgg cttgaaagat cgaagcacga 4800 ccgctactgt gttgactact caaaatggga ttcaactcaa ccaccaaagg ttacatccca 4860 gtcaattgac attcttaggc acttcactga caaatcccca attgttgatt cggcttgtgc 4920 aacacttaaa tcaaacccaa ttggcatctt caatggtgtt gcgttcaaag tggctggtgg 4980 cttgccatct ggcatgccac taacatcaat aatcaactcc ttgaaccatt gtctcatgat 5040 aggctcggct gttgtcaagg ctctcgagga ctccggcatc caggtaactt ggaacatctt 5100 tgactcgatg gacctgttca cctacggtga cgacggtgtt tacatcgttc caccactcat 5160 ctcatcagtt atgccgaaag tctttgcgta tctgaggcag tttggcctga aaccgacccg 5220 gaccgacaaa accgacgctg agataacgcc aatccccgct gatgaaccag ttgagtttct 5280 caagcgaacg atcgtccgca ctgagaacgg cataagagca ttgcttgaca aatcatccat 5340 aattcggcaa ttctactata tcaaagcaga aaacactgaa aactggacaa cacctcccaa 5400 gaaaattgac acatcgtcaa gaggtcaaca actctacaat gcatgtctct atgccagcca 5460 acacggagag gaattctaca cccccaaggt tgtcccactc atcaagcggg caattgaata 5520 tgagggttta cacattgagg taccagaatt ccaccaagct gttgcagctt acaatgggta 5580 cttcaatggt actgaggacc aaccaaacca gatcgctttc gcgagtggtg gaattgggct 5640 cagtggtgag gtgtttgaga attagccact atggctacta ctcatacgct tctgtcgttt 5700 gacgacctcg aatttctctt gcacaagaag gacctaaccg atctctacgg agaaaggtgt 5760 ggcaccctca atctggtcat caacccttac gacctctttc ttcctgatga tcttgatgat 5820 tgttggtgtg atgatccctt taactgttgt ttcactgatg tctatgcctc aataggaact 5880 gagtacagct atattgaccc tcccgaactc atccatgaag agcaccgtgc aacgaacggc 5940 acttggcccg atggaacacc atgtgagcca atcctccccc cattcacaat tttggggacc 6000 catcactact acgccacgaa acctggcgaa gtggttagtg gcatcttgtc caagctcggg 6060 tcttcttggg atccgtccct tcgatccacc gcgaacgtgg aagcaaattt cacgttcagg 6120 gccgaatcgg atggtccagg aaactcggac atcgtgacag aggaacaggg caccgttgtg 6180 caacaacaac ctgcaccagc accagcagct ctggcgactc ttgccacagc ctcgacagga 6240 aaatcggtcg agcaagagtg gatgaccttt ttctcctatc atacctctat caactggtca 6300 acagtggagt cccaaggtaa agtgctttac tcccaggcgc ttaacccatc catcaaccca 6360 taccttgatc acattgcaaa actgtattcc tcatggtcgg gcgggatcga tgttaggttc 6420 accgtctctg gttcaggcgt gttcggcggc aagctcgccg cactgcttgt tcccccaggc 6480 gttgagccga tcgaatccgt ctccatgctg caatacccac atgttttgtt tgacgctcgt 6540 caaaccgaac ctgtgatctt caccatccct gacattcgga aaacactctt ccacaatatg 6600 gatgagacgg atacaacaaa acttgtgatt atggtttaca acgagttgat caacccctac 6660 gagaacaccg tcgaggggaa gacaacttgt tccatcactg ttgaaaccag accttctgct 6720 gacttctgct ttgctctcct taaacctcca ggttctctca tcaaacatgg ttccattccc 6780 tctgatctta tacctagaaa ttctgctcat tggttgggga atcgttggtg gagtaccatc 6840 tcagggtttt cagtccaacc acgtgtgttc caatcaaatc ggcacttcga ttttgactca 6900 acaacaacgg gatggtcaac accatactac gtcccgattg aaatcgagat tgaagccaaa 6960 actggaggtg acaactactg gttccatgtt cgggacactg agaaggcgct agttccagga 7020 cttcccgatg gttggcccga cacaacagtg cctgaatcaa cgtcggcatc gaacggtaat 7080 ttcgattacc gagaaggttt ccacgacaca aaaaccaaag ttgttgaccc cacgaaaaac 7140 gaaacacact tcaaaggtgc atacatctgt gggaccttgt caaccgtgac cctgaccaat 7200 gacaccaaag tcaaggctga cgcgcagaag aaatcacaga caatgtacat cacaattgct 7260 gattacagca gcaaccgtgt gagcccacaa cacaaaatat cctcacggaa attgcttgtc 7320 tacttcgatg gtccacaaca tgatgagacc gtgcatgcaa ccctgagtcc gctcgggttt 7380 gtcatggtag atggccaacc aattggatca gattcttcta aagttgtaag gattgcaaca 7440 ctcccagaag cctttacaca aggagggaat taccccatct tctatatcaa caaggtcaag 7500 gttgggtact ttgacaaaac aacaacagat tgttacaaca gccaaattct gatgaccaca 7560 cagaagcttg cagagggtaa ctacaacctc cctccagatt ccttagctgt ctatagaatt 7620 actgactctt catcccaatg gttcgatgtt ggaatcaacc gtgatggctt ttcctacgtc 7680 ggattgtctg atcttcctgt attggagttt ccgctaacct cgaccttcat gggagtgcag 7740 ctagcgcgtg tcaagctagc gtctaaggtc agagtgaaca ggacgtcaat aaaatgaatt 7800 atgcaaattt tggactcgat cttctcaaca gcgttgccaa cgctgcaatt gagggcaaga 7860 aactcgatct ggcatcacaa ggtttgcagt tgaagagtcg tgtgctcaac accgagcgtg 7920 acttcaatta cgcaagactt gcatttgaaa gatacaaatt tgacacaaac aacgacctaa 7980 agatctatgg tgacgcgcta cgtgtccaag cccttagggc tgccggtctg cgcatcaacc 8040 catactcaaa tggtcgccaa atttatcaag atgaagctga ccttgcaaat ctgcactctt 8100 actatagctt ctacaaaacg gactagttcc aacctgctta acaatctcct aagactttag 8160 cctatgcttt atttcctctt atcagttcct tatttagtta gtcaagtgtt ttatactttc 8220 acctctgtct atttatttaa tcaatgggat aattgttctt aatctagtag actgtagaat 8280 tagttaattg gtaggttgca tcagg 8305 //