Dbfetch
ID EF175733; SV 1; circular; genomic DNA; STD; VRL; 2756 BP. XX AC EF175733; XX DT 01-JAN-2008 (Rel. 94, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Radish leaf curl virus segment A, complete sequence. XX KW . XX OS Radish leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2756 RX DOI; 10.1094/PDIS-91-8-1053B. RX AGRICOLA; IND44010631. RA Singh A.K., Chattopadhyay B., Pandey P.K., Singh A.K., Chakraborty S.; RT "A New Begomovirus Species Causing Leaf Curl Disease of Radish in India"; RL Plant Dis. 91(8):1053-1053(2007). XX RN [2] RP 1-2756 RA Singh A.K., Chattopadhyay B., Pandey P.K., Singh A.K., Chakraborty S.; RT ; RL Submitted (09-DEC-2006) to the INSDC. RL School of Life Sciences, Jawaharlal Nehru University, New Delhi, Delhi 110 RL 067, India XX DR MD5; 5866f162a2bc71588f9332c0cdf9fef8. DR EuropePMC; PMC3305473; 22339942. XX FH Key Location/Qualifiers FH FT source 1..2756 FT /organism="Radish leaf curl virus" FT /segment="A" FT /host="radish cultivar Japanese white" FT /isolate="Varanasi" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="plants showing leaf curl symptoms" FT /collected_by="S. Chakraborty" FT /db_xref="taxon:435646" FT gene 146..502 FT /gene="AV2" FT CDS 146..502 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:A9XCL4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A9XCL4" FT /protein_id="ABP04003.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT IPVIRARNYVEATSRYNHFHARFEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCS" FT gene complement(270..614) FT /gene="AC5" FT CDS complement(270..614) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A9XCL5" FT /protein_id="ABP04009.1" FT /translation="MGKPSSTSNITDTHDFTYMLNIMSGLKGLNLTWAFTSSRNIWTSV FT HPVHPGLSVHGPVRPCFCFGDADNGGSNTAHIWAVEVETATYLRSGRGNDYICWSLRHN FT SWPLLLESNP" FT gene 306..1076 FT /gene="AV1" FT CDS 306..1076 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="responsible for encapsidation of viral DNA and FT insect transmission" FT /db_xref="GOA:A9XCL6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A9XCL6" FT /protein_id="ABP04004.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRVAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1073..1477) FT /gene="AC3" FT CDS complement(1073..1477) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="REn" FT /db_xref="GOA:A9XCL7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A9XCL7" FT /protein_id="ABP04005.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFTMKEDI FT IKVQIQFNYNLRKALEMHKCFLVYRIWMTSQPQTGRFLRVFKTQVLKYLDNLGVISINN FT VIRSVDHVLWNVLQHIVYVEQSYSIKFNIY" FT gene complement(1218..1622) FT /gene="AC2" FT CDS complement(1218..1622) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /note="TrAP; tranactivates virion sense ORFs; suppressor of FT PTGS" FT /db_xref="GOA:A9XCL8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A9XCL8" FT /protein_id="ABP04006.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRHAKKGNRRRRVDLPCGCSYFIALA FT CHNYGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRTPQPSIHNERRHNQSPNTVQLQP FT EESVGDAQVFSSLPNLDDFTASDWSFLKGL" FT gene complement(1525..2610) FT /gene="AC1" FT CDS complement(1525..2610) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /note="DNA polymerase; indespensible for viral replication" FT /db_xref="GOA:A9XCL9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A9XCL9" FT /protein_id="ABP04007.1" FT /translation="MAPPKQFQIYAKNYFLTYPKCSLTKEEALSQLQNLQTPVNKKYIK FT ICRELHENGEPHLRVLIQFEGKYKCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYM FT EKDGDTLDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRIIKELAPKDYVLQFH FT NLNANLDRIYTPPLEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARANRPISVVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNIIDDVDPHYLKHFKEFMGAQRDW FT LSNTKYGKPEQIKGGIPTIFLCNPGPNSSYKVFLDEEKNAALKNWALKNATFITLEGPL FT YSGSNQSAAQACQEGEQTSSC" FT gene complement(2151..2459) FT /gene="AC4" FT CDS complement(2151..2459) FT /codon_start=1 FT /gene="AC4" FT /product="transcriptional regulator protein" FT /note="suppressor of PTGs; involved in symptom expression" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A9XCM0" FT /protein_id="ABP04008.1" FT /translation="MKMGNLIFACSSSSKANTSAKITDSSTSYPQPGQHISIRTFRELN FT QAPMSSPIWRRTETPSTGESFRSTDDLLEGDNRQPTTLTPQRLTQAVSQRLLESLRS" XX SQ Sequence 2756 BP; 747 A; 544 C; 621 G; 844 T; 0 other; accggatggc cgcgattttt tttggggccc ccacaaagca ctaactgaca atgacatgtg 60 gtccaatgag aatcgttcct cgtagcctaa ttgttttgtg gtcccctcta taaacttagt 120 gcgcaagctg tgtttcacat tcaccatgtg ggatccgtta ttgaatgagt ttcccgaaac 180 cgttcacggt tttaggtgta tgttagcagt taaatatctg cagttagtag aaaatacgta 240 ttccccagat actctgggat acgatttaat tagggatttg attccagtaa taagggccag 300 gaattatgtc gaagcgacca gcagatataa tcatttccac gcccgcttcg aaggtacgtc 360 gccgtctcaa cttcgacagc ccatatgtga gccgtgttgc tgcccccatt gtccgcgtca 420 ccaaagcaaa agcatgggcg aacaggccca tgaacagaaa gcccaggatg tacaggatgt 480 acagaagtcc agatgttcct agaggatgtg aaggcccatg taaggttcag tcctttgagt 540 ccagacatga tattcagcat ataggtaaag tcatgtgtgt cagtgatgtt actcgtggaa 600 ctgggcttac ccatagagtg ggtaaaaggt tttgtgttaa gtctgtttat gttttgggca 660 agatctggat ggatgaaaat attaaaacta agaatcacac taatagtgtg atgttctttc 720 tagttaggga tcgtagacct gtagataaac cccaagattt tggagaggta tttaacatgt 780 ttgataatga gcccagtacg gctactgtga agaatgttca tcgtgatagg tatcaagttc 840 ttcggaaatg gcatgcaact gttaccggtg gacaatatgc gtcaaaggaa caagccctcg 900 tgaagaagtt tgttagggtt aataattatg ttgtatataa ccagcaagaa gctggcaagt 960 atgagaatca ttctgagaat gcgttaatgt tgtatatggc atgtactcat gcctctaacc 1020 cagtgtatgc tactttgaag atacggatct atttctatga ttccgtaaca aattaataaa 1080 tattaaattt tattgaatat gattgttcga catatacaat gtgttgtaat acattccata 1140 aaacatgatc aactgatctg attacattat taatactgat aactcctaaa ttatctaaat 1200 attttaaaac ttgagtctta aagaccctta agaaacgacc agtctgaggc tgtgaagtca 1260 tccagattcg gtagactaga aaacacttgt gcatctccaa cgctttcctc aggttgtagt 1320 tgaactgtat ttggactttg attatgtctt ctttcattgt gaatggacgg ttgtggtgtt 1380 ctgttatctt gaaatacagg ggattttgaa tctcccagat aaacacgcca ttctctgctt 1440 gagctgcagt gatgagttcc ccggtgcgtg aatccataat tgtgacaggc tagtgctatg 1500 aaatatgaac atccacaagg tagatcaaca cgacgacgtc tgttcccctt cttggcatgc 1560 ctgtgctgca ctttgattgg aacctgagta gagtgggcct tcgagggtga tgaaggtcgc 1620 attctttaaa gcccaattct tgagtgcagc attcttctct tcatccaaga acactttata 1680 actggaattg ggtcctggat tgcagaggaa gatagtggga attccgcctt taatttgttc 1740 tggctttccg tactttgtat ttgaaagcca gtccctttgg gcccccatga attctttaaa 1800 gtgctttagg tagtggggat cgacgtcatc aatgatattg taccaggcat cattattgta 1860 gaccttaggg ctaaggtcta gatgtccaca caaataatta tgtggtccca gtgacctagc 1920 ccacattgtc ttccctgtcc tactatcacc ctcaatcact acacttattg gtctattggc 1980 ccgcgcagcg gcactgacga cgttctcggc agcccattcc tcaagttctt ccggaacttg 2040 atcaaaagaa gaagaagaaa aaggagaaac ataaacctcc agaggaggtg tataaatcct 2100 atctaaatta gcatttaaat tatggaattg taatacataa tcttttggag ctaactcctt 2160 aatgattcta agagcctctg acttactgcc tgcgttaagc gctgcggcgt aagcgtcgtt 2220 ggctgtctgt tgtccccctc tagcagatcg tccgtcgatc tgaaactctc cccagtcgag 2280 ggtgtctccg tccttctcca tataggactt gacatcggag cttgatttag ctccctgaat 2340 gttcggatgg aaatgtgctg acctggttgg ggatacgagg tcgaagaatc tgttattttt 2400 gcacttgtat ttgccttcga actggatgag cacgcgaaga tgaggttccc cattttcatg 2460 aagctctctg cagattttaa tgtatttttt gtttactggg gtttgtaggt tttgtagttg 2520 ggaaagtgct tcctctttag taagggagca tttgggataa gtaaggaaat aatttttggc 2580 atatatctga aattgtttgg gaggagccat tgacttggtc aatcggtacc cagaactagt 2640 cttatggcaa ttggtgaacg gtaccctata tatagtgggt actgaatggc aatatttgta 2700 attatgaaag aaattcaaaa tcctcacgct ccaatcgcgg ccatccgtat aatatt 2756 //