ID EF165067; SV 2; linear; genomic RNA; STD; VRL; 8115 BP. XX AC EF165067; XX DT 01-MAY-2007 (Rel. 91, Created) DT 11-MAR-2021 (Rel. 144, Last updated, Version 5) XX DE Saffold virus 1, complete genome. XX KW . XX OS Saffold virus 1 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Cardiovirus. XX RN [1] RP 1-8115 RX PUBMED; 17460053. RA Jones M.S., Lukashov V.V., Ganac R.D., Schnurr D.P.; RT "Discovery of a novel human picornavirus in a stool sample from a pediatric RT patient presenting with Fever of unknown origin"; RL J. Clin. Microbiol. 45(7):2144-2150(2007). XX RN [2] RP 1-8115 RA Jones M.S. Jr., Schnurr D.P.; RT ; RL Submitted (06-DEC-2006) to the INSDC. RL CIF, David Grant USAF Medical Center, 101 Bodin Circle, Travis AFB, CA RL 94535, USA XX RN [3] RC Sequence update by submitter RP 1-8115 RA Jones M.S. Jr., Schnurr D.P.; RT ; RL Submitted (04-APR-2008) to the INSDC. RL CIF, David Grant USAF Medical Center, 101 Bodin Circle, Travis AFB, CA RL 94535, USA XX DR MD5; a744a31e6c4deefb2d21e9fe1735fad9. DR EuropePMC; PMC1933019; 17460053. DR EuropePMC; PMC2600268; 18439376. DR EuropePMC; PMC2603095; 18760006. DR EuropePMC; PMC2727318; 19523321. DR EuropePMC; PMC2819865; 19788828. DR EuropePMC; PMC3062622; 21385468. DR EuropePMC; PMC3126553; 21543488. DR EuropePMC; PMC3148564; 21708006. DR EuropePMC; PMC3183034; 21923921. DR EuropePMC; PMC3185493; 21994539. DR EuropePMC; PMC3471643; 23017727. DR EuropePMC; PMC4734772; 26828718. DR EuropePMC; PMC5872539; 29587779. DR EuropePMC; PMC6213509; 30249971. DR EuropePMC; PMC6608973; 31269055. DR RFAM; RF00210; IRES_Aptho. XX CC On Apr 4, 2008 this sequence version replaced EF165067.1. XX FH Key Location/Qualifiers FH FT source 1..8115 FT /organism="Saffold virus 1" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:2779847" FT 5'UTR 1..1040 FT CDS 1041..7931 FT /codon_start=1 FT /product="viral polyprotein" FT /note="SAFgp1" FT /db_xref="GOA:A4ZKN2" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR015031" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="InterPro:IPR037080" FT /db_xref="UniProtKB/TrEMBL:A4ZKN2" FT /protein_id="ABP68884.2" FT /translation="MACKHGYPFLCPLCTAIDISADGSFALLFDNEWYPTDLLTVDLDD FT DVFHPPDCVMEWTDLPLIQDVLMEPQGNSNSSDKNNSQSSGNEGVIINNYYSNQYQNSI FT DLSANANGVGKENTKPQGQLMNILGSAADAFKNIAPLLMDQNTEEMTNLSDRVSSDTAG FT NTATNTQSTVGRLFAFGSRHKGKHPASCADTATDKVLAAERYYTLKLVTWTTTQKPFDH FT VRIPLPHVLAGKQGGVFGSTLRRHYLCKCGWRIQVQCNASQFHAGSLLVFMAPEFDTSS FT YSAVDDPIGEEPFKVDTTWQTGSLRGHSYEDKSTQTLRPLALNHQNYWQWTVYPHQILN FT LRTNTTCDLEVPYVNICPTSSWTQHANWTIVVAVLSPLQYAAGSATEVDITLSIQPVKP FT VFNGLRHSVLEADSPIPVTVREHAGTFYSTTPDNTVPVYGKTVATPSDYMCGEFTDLLS FT LCKIPTFLGNVSSTQRLPYFSATNTVPNNALVTYQVSLSCSCMANSMLASVARNFNQYR FT GSLNYLFVFTGSAMTKGKFLISYTPPGAGKPTTRDQAMQATYAIWDLGLNSSYNFTVPF FT ISPTHYRQTSYTTPSITSVDGWLSVWQLTPLTYPVGCPTNSDILTLVSGGDDFTLRMPI FT SPTKYTPQGVDNAEKGKVSDDNASADFVAVPIQLPENQTEVSFFYDRAVLASALAVGTN FT QGLNNSFSLESASGVMNNILLTPLPSDRLKENEFGLDEQHRWLSFQSATSSTPPYRTKQ FT DWNFLMFSPFTYYKCDLEVTLSLNSGSAAGAVVRYVPSGAPVDITTQTMPFTPSLADTR FT DPHMWLVGAGSTNQISFVLPYTSPLSVLPAVWFNGFSDFSNTSRFGVAPTSDFGRLFVQ FT GSDRFSVHFRYKKMRVFCPRPTVYFPWPSESVSKIHANTPVQILELQDPISIYRVDLFI FT NFSDEIIQFTYKVHGRTVCQYEIPGFGLSRSGRLLVCMGEKPCQLPISTPKCFYHIVFT FT GSRNSFGVSIYKARYRPWKQPLHDELYDYGFSTFTDFFKAVRDYHASYYKQRLQHDVET FT NPGPVQSVFQLQGGVLTKSQAPMSGLQSMLLRAIGIEADCTEFTRAVNLITDLCNTWES FT AKTTLSSPEFWTKMVMRIVKMVAASVLYLHNPDLTTTVCLSLMAGIDILTNDSVFNWLS FT SKLSKFFHTPAPPIVPLLQQQSPIREANDNFNLAKNIEWAIKTIKRIVEWITSWFKQEE FT TSPQAKLDKMLTDFPEHCASILAMRNGRKAYTDCASAFKYFEQLYNLAVQCKRISLATL FT CEKFKNKHDHAVARPEPVVVVLRGNAGQGKSVTSQIIAQAVSKLSFGRQSVYSLPPDSD FT YLDGYENQYSVIMDDLGQNPDGEDFKVFCQMVSSTNFLPNMAHLEKKGTPFTSNFIIAT FT TNLPKFRPVTVAHYPAVDRRITFDLTVEAGDECITPNGMLNVEKAFEEISGKPQLDCFN FT TDCRLLHKRGVRFVCNRTKNVYNLQQVVKMVKNTIDNKVENLKKMNTLVAQSPGNDMDY FT VLTCLRQTNAALQDQIDELQEAFNQAQERQNFLSDWLKVSAIVFASIASLSAVCKLVSR FT FKNLVCPTPVQIQLSEGEQAAYSGGKKGEKQTLQVLDVQGGGKIVAQAGNPVMDYEVNI FT AKNMVTPITFFYADKAQVTQSCLLVKGHLFVVNRHVAETDWCAFELKGTRHERDSVQMR FT SVNKSGMEVDLTFVKVVKGPLFKDNSKKFCSKNDDFPARNETVTGIMNTGVPFVFTGKF FT LVGNQPVNTTTGACFNHCIHYRATTHRGWCGSALICHVNGKKAVYAMHSAGGGGMAAAT FT IITQEMVEAAEKALDCLTPQGAIVEIGIDTVVHVPRKTKLRRTVAHPCFQPKFEPAVLS FT RYDPRTTKDVDQVAFSKHTTNLEELPSVFSMVAKEYANRVFTTIGKENQILTPEQAILG FT LPGMDPMEKDTSPGLPYTQQGLKRAQLVNFEQGTMVQNLKEAHTKLTEGNYEDILYQSF FT LKDEIRPVEKIHEAKTRIVDVPPFHHCIWGRQLLGRFASRFQTNPGLDLGSAIGTDPDT FT DWTAFAFQLLQYKYVYDVDYSNFDASHSTAMFEILIENFFTPENGFDERIGDYLRSLAV FT SRHAFEERRVLVRGGLPSGCAATSMLNTIINNIVIRAALHLAYSNFEFDDIKVLSYGDD FT LLIATNYQINFNLVKQRLAPFNYKITPANKTVEFPETSNLYEVTFLKRKFVRHNSCLFK FT PQMDTENLKAMVSYCRPGTLKEKLNSIALLAVHSGKSVYDEIFDPFRRIGIIVPEHSTM FT LYRWLNLFR" FT mat_peptide 1041..1253 FT /product="leader peptide" FT mat_peptide 1254..1469 FT /product="capsid protein VP4" FT mat_peptide 1470..2276 FT /product="capsid protein VP2" FT mat_peptide 2277..2969 FT /product="capsid protein VP3" FT mat_peptide 2970..3794 FT /product="capsid protein VP1" FT mat_peptide 3795..4220 FT /product="protein 2A" FT mat_peptide 4221..4601 FT /product="protein 2B" FT mat_peptide 4602..5576 FT /product="protein 2C" FT mat_peptide 5577..5834 FT /product="protein 3A" FT mat_peptide 5835..5894 FT /product="protein 3B" FT mat_peptide 5895..6545 FT /product="protein 3C" FT mat_peptide 6546..7928 FT /product="protein 3D" FT 3'UTR 7932..7977 XX SQ Sequence 8115 BP; 2374 A; 1845 C; 1634 G; 2262 T; 0 other; tttcaaaggg ggccctgggg tctttgtcgc ggagatgcgc tagcatcttc gcggtaaaga 60 acaccccagg ggtaacccct ttgaacgcgg gactgcgata gtgccacccc acgtctttcc 120 cactcctaac ccgactccca cctcgggtcc aatgaaagga ccaaataatt catcccttga 180 atgttggcta atcagaggaa agtcagcatt ttccggccca ggctaagaga aacatataag 240 ttagatttga ttcaaatccc ttgacgaatt cgaaacgaga tgttctccct cccttgccgc 300 ttgttcacac ccatacattt aattcggcct cctgtgacaa gcccctcggt gaaagaacct 360 ctctcttttc gacgtggttg gaattaacat catttccgac gaaagtgcta tcatgcctcc 420 ccgattatgt gatgttttct gccctgctgg gcggagcatt ctcgggttga gaaaccttga 480 atcttttcct ttggaacctt ggttcccccg gtctaagccg cttggaatat gacagggtta 540 ttttctttat cttatttcta ctttcacggg ttctatccgt gaaaagggta cgtgttgccc 600 cttccttctt cggagaattc acacggcggt ctttccgtct ctcgacaagt gtgaatgcaa 660 catgccggaa acggtgaaga aaacagtttt ctgcggaagt ctagagtgcg catcgaaaca 720 gctgtagcga cctcacagta gcagcggact cccctcttgg cgacaagagc ctctgcggcc 780 aaaagccccg tggataagat ccactgctgt gagcggtgca accccagcac cctgattcga 840 tgaacgttct ttacggaacc agaggatggt tttcctaagc cctccggtag agaagccaag 900 aatgtcctga aggtaccccg cgtgcgggat ctgatcagga gaccaattga ctgtgcttta 960 caccgtcact ttggtttaaa aactgtcaca gcttctccaa accaagtggt cttggttttc 1020 caattttatt aactggcaat atggcgtgca agcacggata tccgtttttg tgccctcttt 1080 gcactgctat tgacatctct gcagatggat cttttgcttt actatttgac aatgaatggt 1140 acccgactga cctccttact gttgacctgg acgacgacgt gtttcatccc ccggattgtg 1200 ttatggaatg gactgatcta ccattgattc aagatgtgtt gatggaacca caaggcaact 1260 ccaactcctc ggacaaaaac aattctcagt cgtcaggtaa tgaaggtgtc attattaaca 1320 attattactc aaaccaatat caaaattcaa ttgacctttc cgctaatgct aacggcgttg 1380 gcaaagaaaa cacaaaacca caaggtcaac taatgaatat ccttggaagc gcggctgatg 1440 cattcaagaa cattgctccg cttcttatgg atcaaaacac tgaagaaatg accaaccttt 1500 ctgacagagt gtcatcggac accgcaggca acacggctac aaacactcaa tccacagtgg 1560 gtcgtttgtt tgcgtttggt tcgagacaca aaggaaagca tcccgcttcc tgtgcagaca 1620 ccgccacaga caaggtgctt gctgcagaga ggtattacac tctcaaattg gttacatgga 1680 caacaacaca aaaacctttt gaccacgttc gaatacctct tccacatgtg ctggcaggca 1740 agcagggtgg agtttttgga tctactcttc gaagacacta cctttgcaag tgtggctggc 1800 gcatacaagt tcaatgcaat gcctctcagt ttcatgcagg atcattacta gtttttatgg 1860 ctccagaatt tgacacttcc tcctactctg cagtcgacga ccctattgga gaagagccct 1920 ttaaggttga tactacatgg caaacaggtt ctcttcgtgg acattcttac gaagataagt 1980 ccacccaaac tctccggcca ttggcactca accaccaaaa ctattggcaa tggacagttt 2040 atcctcacca aattttaaat ttgagaacaa acacaacttg tgacctggaa gtaccatacg 2100 tgaacatttg cccaacatca tcctggacac agcatgcaaa ttggaccatt gtggtggctg 2160 ttctttcccc tttgcagtac gctgcaggct cagccacgga agtggacatt actctgtcca 2220 tacaacctgt gaaaccagta ttcaatggct taagacactc agttttggaa gcagacagtc 2280 caataccggt gactgtcagg gaacacgcag gtactttcta ttccacaact ccagataata 2340 ctgttccagt atatggaaaa acagtagcaa caccatctga ctacatgtgt ggagaattta 2400 cagacttgct gtcattatgt aaaatcccaa cctttcttgg taatgtgtct tcaacacaaa 2460 gacttcctta tttttcagca acaaacacag tcccaaataa cgctttagtg acatatcaag 2520 tctctctgtc ctgctcttgc atggccaatt ccatgctagc atcagttgct aggaatttca 2580 atcaatacag aggttcttta aattacttgt ttgtctttac gggtagtgct atgacaaaag 2640 gaaaattctt gatatcgtac acaccacctg gtgcagggaa accaacgact agagaccaag 2700 ccatgcaagc cacctatgct atttgggatc taggattgaa ttctagttac aacttcactg 2760 tccctttcat ttcccccaca cattatagac agacttcata taccactcca tccattactt 2820 ctgtagatgg gtggctttct gtctggcaac ttacgcctct cacctaccct gttggttgcc 2880 ctactaattc tgacattctt acactcgtgt cgggtgggga tgactttacc ctcagaatgc 2940 caatttcccc aaccaagtat acccctcaag gtgtggacaa cgctgagaaa ggaaaagttt 3000 cagatgataa cgcttcagct gattttgttg ccgttccaat tcaacttcct gagaatcaga 3060 ctgaagtttc tttcttttat gacagagcag ttctcgcttc agccttggct gtaggcacaa 3120 accaaggctt aaataactct ttttctttgg aatctgcttc aggagttatg aacaatattc 3180 tcttgacacc attgcctagt gacagactca aggaaaacga gtttggttta gatgagcaac 3240 atagatggtt aagctttcaa tcagcaacta gctcaacccc cccttataga actaaacaag 3300 actggaactt tttgatgttt tctcctttca cttattataa gtgtgatctg gaagtaaccc 3360 tttctctcaa ttcgggaagt gcggctgggg ctgtagtcag gtacgtacct agcggtgctc 3420 cggtagacat aacaacccaa acaatgcctt tcactccttc tctcgcagac actcgagacc 3480 cacacatgtg gctggttgga gctggttcta cgaatcaaat ttcgtttgtt ctgccttata 3540 cttctccact atctgtccta cctgctgttt ggtttaacgg attctctgac ttttctaaca 3600 cctcacgctt tggtgttgct ccaacatctg acttcggaag attgtttgta cagggatctg 3660 ataggttttc cgtacatttc agatacaaga aaatgagagt cttctgccca aggcctactg 3720 tttacttccc ttggccttcc gaatctgttt caaaaataca tgccaacaca ccggttcaga 3780 ttttggagct tcaagaccct atttcaatct acagagttga tttgttcata aacttctcag 3840 atgaaatcat tcaattcact tacaaggttc atggcagaac agtttgtcaa tacgaaattc 3900 ccggttttgg tctgtctcgc tctggacgtc ttcttgtgtg tatgggcgaa aaaccttgtc 3960 agcttcccat ctctactcct aagtgtttct accacattgt cttcactggc tccagaaact 4020 cttttggagt gtccatttac aaagcaagat atagaccttg gaaacagccc cttcatgatg 4080 aactttatga ctatgggttc tctactttca ctgatttttt caaagccgtt agagactatc 4140 atgcttctta ttacaaacag agacttcaac atgacgttga aacaaaccct ggccctgttc 4200 agtcggtttt tcagttgcaa ggtggggtgc taactaaatc ccaagcaccc atgtctggtt 4260 tacaaagtat gttactgaga gcaattggaa ttgaagcaga ctgtactgaa ttcaccagag 4320 ctgtaaactt gatcaccgat ctttgtaaca cctgggagag cgctaaaaca acattgtcct 4380 ctcctgaatt ctggaccaaa atggtaatga gaattgtaaa aatggttgct gcttcagttc 4440 tttatcttca caatccagat ttgaccacta ctgtctgtct gtctttgatg gctggaattg 4500 acattctcac taatgatagt gtttttaact ggctgtcttc taaactttcc aaattcttcc 4560 atacccccgc ccctcctatt gttcctcttc tccagcaaca gtctcctatt agagaagcaa 4620 atgacaactt taacttggca aaaaacatag aatgggcaat aaaaacaatt aaaagaatag 4680 tagaatggat tacttcatgg ttcaaacagg aagaaacaag tccccaagct aaactagaca 4740 aaatgttgac agactttcca gaacactgcg cctccatttt ggccatgaga aatggtagaa 4800 aagcatacac agattgtgcc agtgcattta agtattttga acaactctac aatttggcag 4860 tacagtgcaa aagaatatca ttagcaactt tgtgtgaaaa attcaaaaac aagcacgatc 4920 acgccgtagc taggccagaa cctgtggtcg ttgtgttgcg aggaaacgct ggtcagggaa 4980 aatccgtgac tagtcaaatc atcgcacaag cagtttctaa actttcattt ggtcgccaat 5040 cagtttactc tctcccacca gattctgatt atctagatgg ttacgagaat cagtactcag 5100 tgattatgga tgatttagga caaaatcctg atggagaaga tttcaaagta ttctgtcaaa 5160 tggtttcaag cacaaacttt cttccaaata tggcccattt agagaagaaa ggcactcctt 5220 tcacttccaa ttttataata gcaacaacca atcttccgaa gttccggcct gttaccgtag 5280 cacactatcc agctgttgat aggagaatca cttttgatct gactgtcgag gcaggagatg 5340 aatgtatcac tcctaatgga atgttgaatg tggaaaaagc ttttgaggaa atttcaggaa 5400 aaccacaatt ggattgtttc aatactgatt gcaggcttct ccacaaaaga ggcgtgcggt 5460 ttgtttgcaa ccgcacgaag aatgtttaca atcttcaaca agtggtgaaa atggtaaaaa 5520 atactattga taacaaggtg gaaaatctaa agaaaatgaa cacattggtt gcccaatcac 5580 ctggtaatga catggactat gtgttgactt gcctgagaca gacaaatgct gccctacagg 5640 atcaaattga cgaactccaa gaagctttca atcaggccca agaaagacaa aatttcttat 5700 cagattggct caaagtttca gcgattgttt ttgcatccat tgcctcttta tctgcggttt 5760 gtaaattagt ttctagattt aaaaatttgg tgtgtccaac cccagttcag atacagttat 5820 ccgagggaga acaagcagct tactctggag gtaagaaagg tgagaaacaa acgctccagg 5880 tcttggatgt acaaggagga ggaaagattg tagcccaggc tggaaaccca gtcatggact 5940 atgaagtaaa cattgcaaag aacatggtca ctcctatcac tttcttttat gcagacaagg 6000 cacaagttac acaatcctgt ttgttggtca aaggacacct ctttgtggtc aacagacatg 6060 tagctgaaac agattggtgc gcttttgaac tcaaaggaac acgacacgaa agagattcgg 6120 tgcaaatgag atcggtgaac aaatctggaa tggaagttga tttgactttt gtaaaagttg 6180 tcaaaggacc attgtttaag gataattcta agaaattttg ttctaaaaat gacgacttcc 6240 cggctagaaa tgagactgtc acaggaatta tgaatactgg agtacccttt gtcttcactg 6300 gaaagttttt ggtaggcaac caaccggtca acacaaccac aggtgcgtgc tttaaccatt 6360 gtattcatta cagagctaca acacaccgag gttggtgcgg atcagcgctc atatgccatg 6420 tcaacggcaa gaaggccgtt tacgcaatgc actcggctgg tggtggcggt atggctgctg 6480 ctacgataat cactcaggaa atggttgaag ctgctgagaa ggccttagat tgtctaactc 6540 ctcaaggtgc aatagttgaa attggtattg atacggttgt gcacgttccg cgaaaaacca 6600 aactacgcag gacagtagcg cacccctgct tccaaccaaa gtttgaacct gccgtccttt 6660 cacgttacga ccctaggact acaaaagacg tagaccaggt cgctttctct aagcacacaa 6720 ctaatttgga agagcttcca tctgttttct ccatggttgc aaaagaatat gctaatagag 6780 tgtttacaac aataggcaag gaaaaccaaa ttctgactcc agaacaagct attttaggat 6840 taccaggtat ggacccaatg gaaaaggaca catcgcccgg cttgccttac acccaacaag 6900 gcttaaaaag ggctcagttg gtgaattttg aacaaggtac catggtacaa aatctaaaag 6960 aagcacacac taaattgacc gaaggtaatt atgaagatat tttgtaccag agctttttga 7020 aagatgaaat taggcccgta gaaaagatcc acgaagcaaa gactagaatt gtggacgttc 7080 ccccctttca ccactgtatt tggggacgcc aactgttagg acgctttgca tctagatttc 7140 aaacaaaccc cggcttggac cttggctcag cgattggcac tgaccctgat acagattgga 7200 ctgctttcgc cttccaactc ttacagtaca agtatgtcta cgatgtagat tactctaact 7260 ttgatgcctc acactccacc gcaatgtttg aaattttaat tgaaaatttc tttacaccag 7320 aaaatggatt tgatgaaaga ataggagact atctaagatc ccttgcagtt tctcgacatg 7380 cttttgaaga gagaagagtt ttggttaggg gtggtctccc gtcagggtgc gccgccacga 7440 gcatgttgaa cacaattata aataatatag taatcagagc agcactacac ttggcctatt 7500 ccaattttga attcgatgac atcaaagttt tgtcctatgg tgatgattta ctcatcgcca 7560 caaattacca aataaatttc aatcttgtta aacaaagatt agcccccttc aattataaga 7620 ttacacctgc taacaagact gttgaatttc ctgaaacttc taatctttat gaggttactt 7680 ttctaaaaag aaaatttgtt agacacaatt cttgtttgtt taaacctcaa atggatacag 7740 aaaatttgaa agcaatggtt agctattgta gaccaggtac tctaaaggaa aagctcaact 7800 ctatcgcact gctggcagtg cattcaggga agagtgtcta cgacgagatt ttcgacccat 7860 ttcgtcgtat cggaataata gtcccagaac atagtaccat gctctataga tggctcaatc 7920 tatttagatg aacatcctct cgatcggatc gcaacgtgtt acccaggaat ccacttgggt 7980 gtacgcggcc gttctgacgt tggaattctg tagatgaaag ttagctagga gcttttaatt 8040 ggaaatgaga acaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 8100 aaaaaaaaaa aaaaa 8115 //