ID EF155987; SV 1; linear; genomic RNA; STD; VRL; 4223 BP. XX AC EF155987; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate R63MSK polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4223 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4223 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-NOV-2006) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; c51c185ce350901e77af7034580e86e9. XX FH Key Location/Qualifiers FH FT source 1..4223 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea wightii" FT /isolate="R63MSK" FT /mol_type="genomic RNA" FT /country="Uganda:Masaka" FT /isolation_source="leaf" FT /db_xref="taxon:12844" FT CDS <1..4002 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U280" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U280" FT /protein_id="ABO92949.1" FT /translation="GATSCVLHQTKDSLSKHLGLKGVWNKSVITQDLLILAGVFAGGIW FT MIMAGVKDSFDQTVLHQGREKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYSDILLVQGEIDE FT ARLNAIKEDELSREKVAQNPGIHAYYINEITNAALKVDLTQHNPLLACERHSTIAGHPE FT YEGVLRQTGPPFKMTLNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLVNEADG FT RTSDCFGIGYGGLIVTNRHLFKRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIR FT MPKDIPPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWS FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQTRSERWVQDRLYGNLKAVGQ FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSRLNKEAYNKDLFKYATQ FT IQAGDVQVDTFELAERSVISMLTSKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD FT YFEGMSDCDVEDHLFHSCKRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL FT LGGKVCVDDFNNMFYNHHLKFPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDTAHLLDKFGECFS FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGMFIPKLEPERIVSILEWDRSHEPIHRLEA FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA FT SELSAYTRVLKEMYDDSMLQENDLEVYHQSNERTEFKDAGADPPAPKPKNVPPPPTITE FT ITDPEDPKQEALKAARAKQPAVIPESYGRDTSKERESIVGASSKGVRDKDVNVGTVGTF FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ" FT mat_peptide <1..27 FT /product="cytoplasmic inclusion protein" FT /note="CI" FT mat_peptide 28..186 FT /product="6K2 protein" FT mat_peptide 187..762 FT /product="VPg protein" FT mat_peptide 763..1491 FT /product="NIa-Pro protein" FT mat_peptide 1492..3054 FT /product="nuclear inclusion body protein" FT /note="NIb" FT mat_peptide 3055..3999 FT /product="coat protein" FT /note="CP" FT 3'UTR 4003..4223 XX SQ Sequence 4223 BP; 1362 A; 761 C; 981 G; 1119 T; 0 other; ggagccacct cttgtgtgct ccatcaaact aaggattctc tttcaaaaca tcttggtctg 60 aagggagtat ggaacaagtc agttattaca caggacctac ttattctcgc aggagttttt 120 gctggtggaa tctggatgat aatggcggga gtgaaggatt catttgacca aactgtgcta 180 catcaaggaa gagaaaagag gcaaatgcaa aagctgaaat tcagaaaggc acgcgataat 240 aaacttggat tcgaagtgca tgctgatgat ggaactatcg aacacttctt tggtagcgca 300 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tggggtcgaa gaatagaaaa 360 tttataaaca tgtacggatt tgatcccact gaatattcct ttgtccgatt tgttgaccca 420 ttaactggag ctgtgataga tgattccccg tactcagata ttcttcttgt tcaaggagag 480 attgatgagg ctcgtttaaa tgccatcaaa gaagatgaac tttcaagaga aaaagttgca 540 caaaatccag gaattcatgc atattatatc aatgaaatca caaatgctgc actcaaagtt 600 gatcttacac agcacaatcc attgcttgca tgtgaaagac atagtactat cgccggtcat 660 cctgaatatg aaggagtttt gagacaaacc ggacccccat ttaagatgac acttaatgac 720 gtgccagtga atcctgaaga ggcaagtttg gttgggcacg aaagtaaatc attatttaga 780 ggcttaaggg attataatcc aatagctagc gtcatatgtc atctcgtgaa tgaggcagat 840 ggaagaacaa gtgactgttt cgggattgga tatggtggtc tcattgtcac caataggcat 900 ctgtttaaac gaaacaatgg gacgttgaca ataagatctc gtcacggaga gtttgttatt 960 aagaacacaa ctcaacttgg aatgaagccc tgtgctgata gagacatact aatcattagg 1020 atgcctaagg atataccccc atttccacaa cgcctgaaat ttagggttcc aaaagaaaat 1080 gaaagaatct gcttggttgg atcaaatttt caggataaat caatcacgag cacaatttca 1140 gaaaccagcg taacgtgcca tgtgccaaac tcacattttt ggaagcactg gattgataca 1200 aaagatggac attgtggtct tcccttagta agcactactg atggtgcttt gttgggagtg 1260 catagtctat caaatttgac gaacactcag aacttctttg catcattccc tgagaacttt 1320 gaagtggatt atttgaaaac tcctgaggca atggattgga taaagaaatg gagttataat 1380 ccagatgaaa tttgttgggg aacgttggaa ctgaaaacag gacaacccgt tgccccattc 1440 aaagtatcta aactgatcac ggacttagaa ggcatacaag tatatgctca aacaaggtcg 1500 gaaagatggg ttcaagatag actatatggc aatcttaaag cagttggtca atgtcctgca 1560 caattggtta ctaagcacgt tgtaaaggga aaatgcatgc tatttgacct atatttgcag 1620 caagatcaat ctgaaaggga gtatttcaag cctcttatgg gagcatacgg gaaaagtagg 1680 ctcaacaaag aggcgtataa taaggatttg ttcaaatatg cgacacaaat tcaggcagga 1740 gatgtgcaag tggatacatt cgaattggcg gaaagatctg tcatttctat gctcacgtca 1800 aaaggatttg aaaagtgcaa ctacatcaca gatccagagg aaattcttaa agcactgaac 1860 atgaaggctg cagtcggtgc gatgtacagt ggaaagaaga aggattactt tgaaggaatg 1920 agtgattgcg atgtggaaga ccatcttttt catagttgca agcgtttgtt catgggacac 1980 aaaggtcttt ggaatggatc cttgaaagct gagttgagac ctatggaaaa agtggaactt 2040 aacaaaacaa gaaccttcac agcggctcct cttgacacgc tgcttggtgg taaggtgtgt 2100 gtagacgatt tcaacaacat gttttataac caccatttaa aatttccatg gacagtagga 2160 ataaccaaat tttaccaagg atgggatagg cttctcacat ctctacctga aggatgggtt 2220 tattgtgacg ctgatggctc acaatttgat agttctctct ctccatattt gatcaattca 2280 gttcttaata taagaagaga atttatggaa gattgggatg ttggtgatca aatgcttcgg 2340 aatttataca cagaaatagt gtacacacca atactgacac cagacggaac catagtgaag 2400 aagttcaaag gtaacaacag tggacagcca tctactgtgg ttgataatac acttatggtt 2460 gtgttagcag ttcactacac attgctgaaa ctaggaatcc aagagagcga gtttgataaa 2520 tgctgtgtct ttttcgcaaa tggcgatgat ttattattgg caatgaggcc agatacagcc 2580 catttactgg ataagtttgg tgaatgtttt tctgaactag gactcaatta tgacttttca 2640 tcacgaacaa acaagaagga ggatctatgg tttatgtcac actgtggcgt gaaacgtgat 2700 ggaatgttta ttccgaagtt ggagcctgaa aggattgttt caattcttga atgggatcgt 2760 tcacacgagc caattcaccg actggaagca atatgtgccg cgatggtgga atcatggggt 2820 tatgatgaac ttcttcatca tattaggaaa ttttatgcat gggttttgga ccaagcccca 2880 tacaatgaac tagcacgaaa tgggaaagca ccatacatag ctgaaactgc actcaaagca 2940 ctctatactg gtgttcaacc taatgcctct gaattgagtg cgtatacgag agtgctcaaa 3000 gaaatgtatg atgacagtat gctccaagag aatgatttgg aagtatatca tcaatctaat 3060 gagagaactg aatttaaaga tgcaggagcg gaccctccag cccctaagcc taagaacgtt 3120 cctccaccac ccacaataac tgaaatcact gatccagagg acccgaagca ggaagctttg 3180 aaagctgcac gagcaaaaca acccgcggtc attccagagt catatggacg agacacgagc 3240 aaagaaaggg agtcaatagt gggggcatca tcgaagggtg tgagggataa agatgtgaat 3300 gttggcaccg ttggtacatt tgttgtgcca cgtgtcaaga tgaatgcaaa taagaaaagg 3360 caaccaatgg tcaatggaag ggccattata aatttccagc acttgtcaac atatgaacca 3420 gagcaatttg aggttgcaaa cacccggtca actcaagaac agttccaagc atggtatgaa 3480 ggagttaaag gggattatgg tgttgacgac acagggatgg ggatcttatt gaatggacta 3540 atggtttggt gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg 3600 gatggtgatg aacaagtaac atatccaatt aaaccattac tggaccatgc agtgcctact 3660 tttaggcaga tcatgacgca cttcagtgac gttgctgaag cttacataga gatgcgaaac 3720 cgtacaaagg catacatgcc aaggtatggt ctacaacgta atttgactga tatgagtctt 3780 gcgcgatatg catttgattt ttacgagctg cattcaacta cacctgcacg tgctaaagaa 3840 gcacatttac agatgaaggc agccgcactc aagaatgcgc gaaatcggtt gtttggttta 3900 gacggaaacg tctctacgca agaagaagat acggagaggc acacgacaac tgatgttact 3960 agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct ctgcactgta 4020 gcttatactt atgttatctt tagtatgcct ttaatttaaa ttcgtgtctt tcagtcccga 4080 aggagatggt tgaatgcata acatggtggg attatatctc ggttattgca tttgagaagt 4140 cgcctttcta ttacgtatca taagggactc ttaaaagtga ggaatacctc gtaagaaaag 4200 cctttttggt tcgtgatcga gcc 4223 //