ID EF155978; SV 1; linear; genomic RNA; STD; VRL; 4332 BP. XX AC EF155978; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate R136MPG polyprotein gene, DE partial cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4332 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4332 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-NOV-2006) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; ffd082a95576c8c2fda6207141c75101. XX FH Key Location/Qualifiers FH FT source 1..4332 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea indica (Ipomoea acuminata)" FT /isolate="R136MPG" FT /mol_type="genomic RNA" FT /country="Uganda:Mpigi" FT /isolation_source="leaf" FT /db_xref="taxon:12844" FT CDS <1..4110 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U271" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="UniProtKB/TrEMBL:E1U271" FT /protein_id="ABO92940.1" FT /translation="IAVLSSARAQLLEFENLSMDASYNEMSKGILETYVRENGATTCVL FT HQTKSDLARHLQLKGIWNKSVITQDLLVLAGVFVGGIWMVFSGAKESFEQTVKHQGKEK FT RQRQKLKFRQARDRKLGFEVHADDGTIEHYFGSAYTAKGKQKGKVTGMGAKNRKFINMY FT GFDPTEYSFVRFVDPLTGLVFDDSPYTDIQLVQEKVGDARHKAILEDKLSRERISYNPG FT ISAYYINEFTNAALKVDLTPHNPLLACERHSTIAGHPDHEGELRQTGSVVKIDIRDVPE FT NPEEASLVGHESKSLFRGLRDYNPIASVICHLVNEADGRTSDSYGIGYGGLIITNRHLF FT KRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIKMPKDIPPFPQRLQFRVPKENE FT RICLVGSNFQDKSITSTVSETSVTCHVPNSHFWKHWIDTKDGHCGLPLVSTVDGAILGV FT HSLSNLTNTQNFFAAVPANFEIDYLKTPEATEWIKKWSYNPSEICWGTLELKTGQPTAP FT FKVTKLITDLDSMQVYAQARSDKWVLDRLYGNLKAVGQCPAQLVTKHVVKGKCMLFDLY FT LQQDHDVRSFFKPLMGAYGKSRLNKEAYNKDLFKYATPINAGDVCHKTFEQAELAVVEM FT LKANGFHKCNYITDSEEIVKAFNMKAAVGAMYSGKKKDYFDGMSDEDIENLLFHSCKRL FT YMGQKGLWNGSSKAELRPMAKVELNKTRTFTAAPLDTLLGVKTCVDDFNNMFYNNHLKC FT PWTVGITKFYQGWDRLLTSLPENWIYCDADGSQFDSSLSPYLINAVLNIRREFMEEWDI FT GDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVVLAVYYTLLKLGI FT SEPEISERCVFFANGDDLLIAMRPDTAHLLDSFGECFAELGLNYDFSSRTTKKEELWFM FT SHCGIKRDGMYIPKLEPERIVSILEWDRSHEPVHRLEAICAAMVEAWGYDELLHQIRKF FT YAWVLGQAPYSELARTGKAPYIAETALKSLYTGVQPSADDLSEYTRVLNEMYDDSLLQD FT NDLSVYHQSGNPPEFKDAGANPPAPKPKGAYTAPEITEVTEPEDPKQAALREAKQKQPA FT VIPESYGRDTGEKSMRSVSPQRVKDKDVNVGTTGTFVVPRVKLHTSKMRQPRVNGLSVV FT NLQHLATYEPEQHNIGNTRSTQEQFRAWYEGVKGDYGVDDAGMAILLNGLMVWCIENGT FT SPNINGVWTMMDGDEQVTYPVKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPR FT YGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHMQMKAAALKNAHNRLFGLDGNVSTQ FT EEDTERHTATDVTRNIHNLLGMRGVQ" FT mat_peptide <1..141 FT /product="cytoplasmic inclusion protein" FT /note="CI" FT mat_peptide 142..300 FT /product="6K2 protein" FT mat_peptide 301..876 FT /product="VPg protein" FT mat_peptide 877..1605 FT /product="NIa-Pro protein" FT mat_peptide 1606..3168 FT /product="nuclear inclusion body protein" FT /note="NIb" FT mat_peptide 3169..4107 FT /product="coat protein" FT /note="CP" XX SQ Sequence 4332 BP; 1350 A; 816 C; 1041 G; 1125 T; 0 other; atagctgtac tatcatcagc cagagcacaa cttctcgaat ttgaaaattt gagtatggat 60 gcctcatata atgaaatgag caaaggaatt cttgaaacgt atgtgcgtga gaacggtgcc 120 accacttgtg tattacacca aacaaaaagt gatcttgcga ggcatctaca gcttaagggc 180 atttggaata aatccgtgat aacacaagat ctcctagtgc tagcaggagt ttttgttggt 240 ggtatatgga tggtgttttc gggtgcaaag gaatcttttg agcagacagt taaacaccaa 300 ggaaaagaga aaagacaaag gcaaaagttg aagttccggc aggctcgtga taggaaacta 360 ggatttgagg tccacgcaga tgatggcaca atcgagcatt actttggaag tgcctacact 420 gcgaaaggaa aacagaaagg aaaggtcacg ggtatggggg cgaaaaatag gaagtttata 480 aatatgtatg gcttcgaccc gactgagtac tcttttgtga gatttgtgga tccgttgaca 540 ggattggtat ttgatgactc accatacaca gatattcaac tggttcaaga aaaggttggt 600 gatgcgaggc ataaggcaat acttgaggat aagctctccc gcgagaggat atcatacaat 660 cctgggatta gtgcatatta tatcaatgag tttacaaatg cggcattgaa ggttgatctc 720 acaccacaca acccattact tgcatgtgag agacatagca caatagctgg acatccagat 780 catgagggtg agttacggca gactggctcc gttgttaaga ttgatattag agatgtgccg 840 gagaacccag aagaagcatc gcttgtggga catgagagca aatccctttt caggggtttg 900 agggactaca atccaattgc aagtgtaata tgtcatttag taaatgaagc agatggtagg 960 acaagtgatt catatggcat tggatatggc ggtctaatca tcacgaatag acatctattc 1020 aagcgtaata atggaactct cacaatacgc tcgcgacatg gggaattcgt gattaagaac 1080 accactcaac tgggtatgaa accatgtgct gaccgtgaca tattgataat aaagatgcct 1140 aaagacattc caccttttcc acagagactt cagtttaggg ttcccaagga gaatgagcgc 1200 atttgtctag taggttcaaa cttccaagac aaatctatca cgagcactgt ctctgaaacg 1260 agtgtcacat gtcatgtacc aaactcacat ttttggaagc attggataga cacaaaagat 1320 ggacattgtg gcttacctct tgtaagcaca gttgatggtg cgattttggg ggttcatagc 1380 ttgtcaaatc tcacaaacac ccaaaacttc tttgcagctg tccctgcaaa ctttgagatt 1440 gattacctta aaacgcccga ggcgactgaa tggattaaga aatggagtta caatccaagc 1500 gaaatttgtt gggggacttt ggaacttaag acaggacaac caactgcacc ttttaaagtc 1560 accaagttga taacagatct tgacagtatg caagtgtatg ctcaagcgcg ctcggacaaa 1620 tgggtgctag acaggttgta tgggaatttg aaagctgtgg gacagtgtcc agcgcaactt 1680 gttacaaagc acgttgtgaa gggaaagtgt atgctgttcg atttgtatct tcaacaagat 1740 cacgatgtta gaagcttttt caaacctcta atgggagcat atgggaagag tagattaaac 1800 aaggaagcgt acaacaagga tttattcaag tatgcaactc caatcaatgc aggggatgtg 1860 tgtcacaaaa catttgagca ggcagagcta gcagttgtcg agatgctcaa agcaaatggt 1920 tttcataagt gtaactacat tacagattcg gaggaaattg tcaaggcatt caacatgaaa 1980 gcagctgtcg gagcaatgta tagtggaaag aagaaagact attttgatgg tatgagcgac 2040 gaggatattg aaaatcttct ttttcacagc tgtaagcggt tgtacatggg gcagaaagga 2100 ctttggaatg gctcctcaaa ggctgagctc agacccatgg caaaagttga attgaacaag 2160 acaagaactt ttacagcggc cccacttgac acacttttgg gtgttaaaac atgtgttgat 2220 gattttaaca atatgtttta caacaaccat ctcaagtgcc catggacagt aggtatcaca 2280 aaattctatc aaggatggga tagattgtta acatctttac ctgaaaattg gatttattgt 2340 gatgcggatg gttctcaatt tgacagctct ctgtcacctt atcttattaa tgctgtcctc 2400 aatatacgga gggaattcat ggaagaatgg gacatagggg accaaatgct tcgaaatttg 2460 tacacagaga ttgtatatac gccgattcta acaccagatg gaactatagt gaagaagttc 2520 aaaggaaata acagtgggca accatcaacc gtcgtggaca atacactgat ggttgtgttg 2580 gccgtctact acactttgtt gaaattgggt atttcagagc ccgagatcag tgaacggtgt 2640 gtattctttg caaatgggga tgatctactg atagctatga gaccagatac agctcatctt 2700 ctagatagct tcggtgagtg ctttgctgag cttgggctta actatgactt ctcatcaagg 2760 acaaccaaga aagaggagtt atggttcatg tctcactgtg gaatcaaacg agatggaatg 2820 tacattccca aactcgagcc tgaacgaata gtatcaattc ttgaatggga tagatcacat 2880 gagcctgtac acagacttga agcaatttgt gctgcaatgg tggaagcgtg gggctacgat 2940 gaacttcttc accaaattag gaaattctat gcatgggtct taggacaagc accatacagt 3000 gaactagcac gaactggaaa ggccccatat attgctgaaa ctgcacttaa atcattgtac 3060 actggagtac aacctagcgc tgacgatctc agcgagtaca cgcgtgttct taacgagatg 3120 tatgatgata gccttctcca agacaatgac ttatcggtgt atcatcagtc tggcaacccc 3180 cctgaattta aagatgcggg tgcaaaccca ccagcaccaa aaccaaaagg ggcatataca 3240 gcaccagaaa tcacagaggt tactgagccg gaggatccca aacaagctgc acttcgcgaa 3300 gctaaacaaa aacaacctgc tgtcataccc gaatcgtacg gtagagacac aggtgagaaa 3360 tctatgcgct ctgtttcacc acaaagggtg aaagacaagg atgtcaacgt tggcacgaca 3420 ggcacatttg tggtgccacg agttaagctc catactagca aaatgcggca acctagagtt 3480 aatggactct ctgtagtaaa cctacaacac ctcgcaactt atgaacctga gcaacataac 3540 attgggaata cacgctcaac tcaggaacaa tttcgagcat ggtatgaagg tgttaagggt 3600 gattatggtg ttgatgatgc tggaatggca atcttgttga atggattgat ggtatggtgc 3660 atagagaatg gaacatctcc aaatataaat ggcgtttgga cgatgatgga tggggatgaa 3720 caagtgacgt atcccgtaaa gccattactg gatcatgcag tgcctacttt taggcagatc 3780 atgacacact tcagtgacgt tgctgaagcg tatatagaaa tgagaaatcg caccaaggca 3840 tatatgccta ggtatggatt acaacgtaac ttgactgata tgagtcttgc gcgatatgca 3900 tttgatttct atgagctgca ctcaacaaca cctgcacgtg ctaaagaagc acacatgcag 3960 atgaaagcag ctgcacttaa gaatgcgcat aatcggttgt ttggtttgga cggaaacgtc 4020 tccacgcaag aagaggatac ggagaggcac actgcaactg atgttactag aaatatacat 4080 aacctcttag gaatgagggg tgtgcagtag gtgaaacttt gcactgtatt tatttactta 4140 tgtggttttt agtatgcctt tatttaaatt cgtgtccttc agtcccgaca gagatggttg 4200 ggtgtatcgg cagagtgggt ttctagcctg gtctatacac ttgagaagtt tctggtctat 4260 tacgtatcat aagggactct taaaagtgag gagtacctcg taagaaaagc ctttttggtt 4320 cgtgatcgag cc 4332 //