ID EF155977; SV 1; linear; genomic RNA; STD; VRL; 4332 BP. XX AC EF155977; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate R57LUW polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4332 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4332 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-NOV-2006) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 937cd42d180547bda6270ec2760ed2f1. XX FH Key Location/Qualifiers FH FT source 1..4332 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea indica (Ipomoea acuminata)" FT /isolate="R57LUW" FT /mol_type="genomic RNA" FT /country="Uganda:Luwero" FT /isolation_source="leaf" FT /db_xref="taxon:12844" FT CDS <1..4110 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U270" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U270" FT /protein_id="ABO92939.1" FT /translation="IAVLSSARAQLLEFDNLSMDASYNEMSKGILETYVRENGATTCVL FT HQTKSDLAKHLQLKGIWNKSVITQDLLVLAGVFVGGIWMVFSGAKESFEQTVKHQGKEK FT RQRQKLKFRQARDRKLGFEIHADDGTIEHYFGSAYTAKGKQKGKVTGMGAKNRKFINMY FT GFDPTEYSFVRFVDPLTGLVFDDSPYTDIQLVQEKIGDARHKAILEDKLSRERISYNPG FT IIAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPDHEGELRQTGSVVKIDIRDVPE FT NPEEASLVGHESKSLFRGLRDYNPIASVICHLVNEADGRTSDSYGIGYGGLIITNRHLF FT KRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIKMPKDIPPFPQRLQFRVPKENE FT RICLVGSNFQDKSITSTVSETSVTCHVPNSHFWKHWIDTKDGHCGLPLVSTVDGAILGV FT HSLSNLTNTQNFFAAVPANFEIDYLKTPEATEWIKKWSYNPSEICWGTLELKTGQPVVP FT FKVTKLITDIDSMQVYAQARSDKWVLDRLYGNLKAVGQCPAQLVTKNVVKGKCMLFDLY FT LQQDHDVRSFFKPLMGAYGKSRLNKEAYNKDLFKYATPINAGDVCHKTFEQAELAVVEM FT LKANGFHKCNYITDPEEIVKALNMKAAVGAMYSGKKKDYFDGMSDEDIENLLFHSCKRL FT YMGQKGLWNGSLKAELRPMAKVELNKKRTFTAAPLDTLLGGKTCVDDFNNMFYNNHLKC FT PWTVGITKFYQGWDRLLTSLPEDWIYCDADGSQFDSSLSPYLINAVLNIRREFMEEWDI FT GDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVVLAVYYTLLKLGV FT SEFEINERCVFFANGDDLLIAMRPDTAHLLDSFGECFAELGLHYDFSSRTTKKDELWFM FT SHCGIKRDGMYIPKLEPERIVSILEWDRSHEPVHRLEAICAAMVEAWGYDELLHQIRKF FT YAWVLGQAPYSELARTGKAPYIAETALKSLYTGVQPSADDLSEYTRVLNEMYDDSLLQD FT NDLSVYHQSGNPSEFKDAGANPPAPKPKGAYTAPEITEVTEPEDPKQAALREARQKQPA FT VIPESYGRDTGEKPMRSVSPQRVKDKDVNVGTTGTFVVPRVKLHTSKMRQPRVNGLSVV FT NLQHLATYEPEQHNIGNTRSTQEQFRAWYEGVKGDYGVDDAGMAILLNGLMVWCIENGT FT SPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPR FT YGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHMQMKAAALKNAHNRLFGLDGNVSTQ FT EEDTERHTATDVTRNIHNLLGMRGVQ" FT mat_peptide <1..141 FT /product="cytoplasmic inclusion protein" FT /note="CI" FT mat_peptide 142..300 FT /product="6K2 protein" FT mat_peptide 301..876 FT /product="VPg protein" FT mat_peptide 877..1605 FT /product="NIa-Pro protein" FT mat_peptide 1606..3168 FT /product="nuclear inclusion body protein" FT /note="NIb" FT mat_peptide 3169..4107 FT /product="coat protein" FT /note="CP" XX SQ Sequence 4332 BP; 1358 A; 820 C; 1035 G; 1119 T; 0 other; atagctgtac tatcatcagc cagagcacaa ctcctcgaat ttgacaattt gagtatggat 60 gcctcatata acgaaatgag caaaggaatt cttgaaacgt atgtgcgtga gaacggtgcc 120 accacttgtg tattacacca aacaaaaagt gacctcgcga agcatctaca gcttaagggc 180 atttggaata aatccgtgat aacacaagat ctcctggtac tagcaggggt ttttgttggt 240 ggtatttgga tggtgttttc gggtgcaaag gaatcttttg agcagacagt taaacaccag 300 ggaaaagaga aaagacaaag gcaaaagttg aagttccggc aggctcgtga taggaaacta 360 ggatttgaga tccacgcaga tgatggcaca attgagcatt actttggaag tgcctacact 420 gcgaaaggaa aacagaaagg aaaggtcacg ggtatggggg cgaagaatag gaagtttata 480 aatatgtatg gcttcgaccc gactgagtac tcttttgtga gatttgtgga cccgttgaca 540 ggattggtat ttgatgactc accatacaca gatattcaac tggttcaaga aaagattggt 600 gatgcgaggc ataaggcaat acttgaggat aagctctccc gcgagaggat atcatacaat 660 cctgggatta ttgcatatta tatcaatgag attacaaatg cagcattgaa agtagatctc 720 acaccacaca acccattact cgcatgtgag agacatagca caatagctgg acatccagat 780 catgagggtg agttacggca gactggttcc gttgttaaga ttgatattag agatgtgccg 840 gagaacccag aagaagcatc gcttgtggga catgagagca aatccctttt caggggtttg 900 agggactaca atccaattgc aagtgtaata tgccatttag taaatgaagc agatggtagg 960 acaagtgatt catatggcat aggatatggc ggtctaatca tcacgaatag acatctattc 1020 aagcgtaata atggaactct cacaatacgc tcgcgacatg gggaattcgt gattaagaac 1080 accactcaat tgggtatgaa accatgtgct gaccgtgaca tattgataat aaagatgccc 1140 aaagacatcc caccttttcc acagagactt cagtttaggg tccccaagga gaatgagcgc 1200 atttgtctag taggttcaaa cttccaagac aaatctatca caagcactgt ctctgaaacg 1260 agtgtcacat gtcatgtacc aaactcacat ttttggaagc attggataga cacaaaagat 1320 ggacattgtg gcttacctct tgtaagcaca gttgatggtg cgattctggg ggttcatagc 1380 ttgtcaaatc tcacaaatac ccaaaacttc tttgcagctg tccctgcaaa ctttgagatt 1440 gattacttaa aaacgcccga ggcgactgaa tggattaaga aatggagtta taacccaagc 1500 gaaatctgtt gggggacttt ggaactgaag acaggacaac cagttgtacc ttttaaagtc 1560 accaagttga taacagatat tgacagtatg caagtgtatg ctcaagcgcg ctcggacaaa 1620 tgggtactag acaggttgta tgggaatttg aaagccgtgg gacagtgtcc agcgcaactt 1680 gttacaaaaa acgttgtgaa gggaaagtgt atgctttttg atttgtatct tcaacaagat 1740 cacgatgtta gaagcttttt caagccttta atgggagcat atgggaagag tagattgaac 1800 aaggaagcat acaacaagga tttattcaag tatgcaactc caatcaatgc aggggatgtg 1860 tgtcacaaaa catttgagca ggcagagcta gcagttgtcg agatgctcaa agcaaatggt 1920 tttcataagt gtaactacat tacagatccg gaggaaattg tcaaggcact taacatgaaa 1980 gcagctgtcg gagcaatgta tagtggaaag aaaaaagact attttgatgg tatgagcgac 2040 gaggatatcg aaaatcttct ttttcacagc tgtaagcggt tgtacatggg ccagaaagga 2100 ctttggaatg gctccttaaa ggctgagctc agacccatgg caaaagttga gttgaacaaa 2160 aaaagaactt ttactgcggc cccacttgac acacttttgg gtggtaaaac atgtgttgat 2220 gactttaaca atatgtttta caacaaccat ctcaagtgcc catggacagt aggcatcaca 2280 aaattctatc aaggatggga tagattgtta acatctttac ctgaagattg gatttattgt 2340 gatgcggatg gttctcaatt tgacagctct ttgtcaccct atcttattaa tgctgtcctc 2400 aatatacgga gggaattcat ggaagaatgg gacatagggg accaaatgct tcgaaatttg 2460 tacacagaga ttgtatacac gccgattcta acaccagatg gaaccatagt gaagaagttc 2520 aaaggaaata acagtgggca accatcaacc gtcgtggaca atacactgat ggttgtgttg 2580 gccgtttact acactttgtt gaaattgggt gtctcagaat tcgaaatcaa tgaacggtgt 2640 gtattctttg caaatgggga tgatctactg atagctatga gaccagatac agctcatctt 2700 ttggatagct tcggtgagtg ctttgctgag cttgggcttc actatgactt ctcatcaagg 2760 acaaccaaga aagatgaatt atggttcatg tctcactgtg gaatcaaacg agatggaatg 2820 tacattccca aactcgagcc tgaacgaata gtatctattc ttgaatggga tagatcacat 2880 gagcctgtac acagactaga agcaatttgt gctgcaatgg tggaagcgtg gggctacgat 2940 gaacttctcc accaaattag aaaattttat gcatgggtct taggacaagc accatacagt 3000 gaactagcac gaactggaaa ggccccatat attgctgaaa ctgcactcaa atcattgtac 3060 actggagtac aacctagcgc tgacgatctc agtgagtaca cgcgtgttct taacgagatg 3120 tatgatgata gccttctcca agacaatgac ttatcggtgt atcatcagtc tggaaacccc 3180 tctgaattta aggatgcggg tgcaaaccca ccagcaccaa aaccaaaagg ggcatataca 3240 gcaccagaaa tcacagaggt taccgagccg gaggatccca aacaagctgc acttcgcgaa 3300 gctagacaga aacaacctgc tgttataccc gaatcatacg gtagagacac aggtgagaaa 3360 cctatgcgct ctgtttcacc gcaaagggtg aaagacaagg atgtcaacgt tggcacaaca 3420 ggcacatttg tggtgccacg agttaaactc catactagca aaatgcggca acctagagtt 3480 aatggactct ctgtagtaaa cttacaacac ctcgcaactt atgagcctga gcaacataac 3540 attgggaata cacgctcaac tcaggaacag tttcgagcat ggtatgaagg tgttaagggt 3600 gattatggtg ttgatgatgc tggaatggca atcttgttga atggattgat ggtatggtgc 3660 atagagaatg gaacatctcc aaatataaat ggcgtttgga cgatgatgga tggggatgaa 3720 caagtgacgt accccataaa gccattactg gatcatgcag tgcctacttt taggcaaatc 3780 atgacacact tcagtgacgt tgctgaagcg tatatagaaa tgagaaatcg caccaaggca 3840 tatatgccta ggtatggatt acaacgtaac ttgactgata tgagtcttgc gcgatacgca 3900 tttgatttct atgagctgca ctcaacaaca cctgcacgtg ctaaagaagc acacatgcag 3960 atgaaagcag ctgcacttaa gaatgcgcat aatcggttgt ttggtttgga tggaaacgtc 4020 tccacgcaag aagaggatac ggagaggcac actgcgactg atgttactag aaatatacat 4080 aacctcttag gaatgagggg tgtgcagtag gtgaaacttt gcactgtatt tatttactta 4140 tgtggttttt agtatgcctt tatttaaatt cgtgtccttc agtcccgaca gagatggttg 4200 ggtgtatcgg cagagtgggt ttttagcctg gtctatacac ttgagaagtt tctggtctat 4260 tacgtatcat aagggactct taaaagtgag gagtacctcg taagaaaagc ctttttggtt 4320 cgtgatcgag cc 4332 //