ID EF155976; SV 1; linear; genomic RNA; STD; VRL; 4332 BP. XX AC EF155976; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate 46RUK polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4332 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4332 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-NOV-2006) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 0ae198d63601278f1ee56d1366488110. XX FH Key Location/Qualifiers FH FT source 1..4332 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea indica (Ipomoea acuminata)" FT /isolate="46RUK" FT /mol_type="genomic RNA" FT /country="Uganda:Rukungiri" FT /isolation_source="leaf" FT /db_xref="taxon:12844" FT CDS <1..4110 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U269" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="UniProtKB/TrEMBL:E1U269" FT /protein_id="ABO92938.1" FT /translation="IAVLSSARAQLLEFENLSMDASYNEMSKGILETYVRENGATTCVL FT HQTKSDLAKHLQLKGIWNKSVITQDLLVLAGVFVGGIWMVFSGAKESFEQTVKHQGKEK FT RQRQKLKFRQARDRKLGFEVHADDGTIEHYFGSAYTAKGKQKGKVTGMGAKNRKFINMY FT GFDPTEYSFVRFVDPLTGLVFDDSPYTNIQLVQEKIGDARHKAILEDKLSRERISYNPA FT ISAYYINEITNAAGKVDLTPHNPLLACERHNTIAGHPDHEGELRQTGSVIKVDIRDVPE FT NPEEASLVGHESKSLFRGLRDYNPIASVICHLVNEADGRTSDSYGIGYGGLIITNRHLF FT KRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIKMPKDIPPFPQRLQFRIPKENE FT RICLVGSNFQDKSITSTVSETSVTCHVPNSHFWKHWIDTKDGHCGLPLVSTVDGAILGV FT HSLSNLTNTQNFFAAVPANFEIDYLKTPEATEWIKKWSYNPSEICWGTLELKTGQPVAP FT FKVTKLITDLDSMQVYAQARSDRWVLDRLYGNLKAVGQCPAQLVTKHVVKGKCMLFDLY FT LQQDYDVRSFFKPLMGAYGKSRLNKEAYNKDLFKYATPINAGDVCHKTFEQAELAVVDM FT LKANGFHKCNYITDPEEIFKALNMKAAVGAMYSGKKKDYFDGMGDEDIENLLFHSCKRL FT YMGQKGLWNGSLKAELRPMAKVELNKTRTFTAAPLDTLLGGKTCVDDFNNMFYNNHLKC FT PWTVGITKFYQGWDRLLTSLPEDWIYCDADGSQFDSSLSPYLINAVLNIRREFMEEWDI FT GDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVVLAVYYTLLKLGV FT SELEISERCVFFANGDDLLIAMRPDTAHLLDNFGECFAELGLNYDFSSRTTKREELWFM FT SHCGIKRDGIYIPKLEPERIVSILEWDRSHEPIHRLEAICAAMVEAWGYDELLHQIRKF FT YAWVLGQAPYSELARNGKAPYIAETALKSLYTGEQPSADDLSEYTRVLNEMYDDSLLQD FT NDLTVYHQSGNPPEFKDAGANPPAPKPKGAYTAPEITEITEPEDPKQAALREARQKQPA FT VTPESYGRDTGEKPMRSVSPQRVKDKDVNVGTTGTFLVPRVKLHTSKMRQPRVNGISVV FT NLQHLATYEPEQHNIGNTRSTQEQFQAWYEGVKGDYGVDDAGMSILLNGLMVWCIENGT FT SPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPR FT YGLQRNLTDMSLARYAFDFYELHSTTPTRAKEAHMQMKAAALKNAHNRLFGLDGNVSTQ FT EEDTERHTATDVTRNIHNLLGMRGVH" FT mat_peptide <1..141 FT /product="cytoplasmic inclusion protein" FT /note="CI" FT mat_peptide 142..300 FT /product="6K2 protein" FT mat_peptide 301..876 FT /product="VPg protein" FT mat_peptide 877..1605 FT /product="NIa-Pro protein" FT mat_peptide 1606..3168 FT /product="nuclear inclusion body protein" FT /note="NIb" FT mat_peptide 3169..4107 FT /product="coat protein" FT /note="CP" FT 3'UTR 4111..4332 XX SQ Sequence 4332 BP; 1365 A; 819 C; 1026 G; 1122 T; 0 other; atagctgtac tatcatcagc tagagcgcaa cttctcgaat ttgaaaattt gagtatggat 60 gcctcatata acgaaatgag caaaggaatc cttgaaacgt atgtgcgtga gaatggtgcc 120 accacttgtg tattgcacca aacaaaaagt gatctcgcga agcatctaca gcttaagggc 180 atttggaata aatccgtgat aacacaagat cttctggtac tagcaggagt ttttgtcggt 240 ggtatttgga tggtgttttc gggtgcaaag gaatcttttg agcagacagt taaacaccaa 300 ggaaaagaga aaagacaaag gcaaaagttg aagttccggc aggctcgtga taggaaacta 360 ggctttgagg tacacgcaga tgatggcaca attgaacatt actttggaag tgcttatact 420 gcgaaaggaa aacagaaagg aaaggttacg ggtatggggg cgaagaatag gaagtttata 480 aatatgtatg gcttcgaccc gactgagtat tctttcgtga gatttgtgga tccattgaca 540 gggttggtgt ttgatgactc accatacaca aatattcaac tggttcaaga aaagattggt 600 gatgcaaggc ataaggcaat acttgaggat aagctctccc gagagaggat atcatacaat 660 cctgcaatta gtgcatatta tatcaatgag attacaaatg cggcagggaa ggtagatctc 720 acaccacata acccgttact tgcatgtgag agacataaca caatagctgg acatccagac 780 cacgagggtg agttacgaca gactggctcc gttattaaag ttgacattag agatgtgccg 840 gagaacccag aggaagcatc gcttgtggga catgagagca aatctctttt caggggtttg 900 agggactaca atccaatcgc aagtgtaata tgccatttag tgaatgaagc agacggtagg 960 acaagtgatt catatggcat tggatatggc ggcctaatca tcacgaatag acatctattc 1020 aagcgtaata atggaactct cacaatacgc tcacgacatg gggaattcgt gattaagaat 1080 accactcaac tgggtatgaa accatgtgct gaccgtgaca tattgataat aaagatgccc 1140 aaagatatcc cacctttccc gcagagactt cagttcagga ttcccaagga gaatgagcgt 1200 atttgtctag taggttcgaa cttccaagac aaatctatca caagcactgt ctctgaaacg 1260 agcgtcacat gtcatgtgcc aaactcacat ttttggaagc attggataga cacaaaggat 1320 ggacattgtg gcttacctct tgtaagcaca gttgatggtg caatcctggg ggttcatagt 1380 ttgtcaaacc tcacaaacac ccaaaatttc tttgcagctg tccctgcaaa ctttgagatt 1440 gattacttaa aaactcccga ggcaactgaa tggattaaga aatggagtta taacccaagt 1500 gaaatctgtt ggggaacttt ggaactcaag acaggacaac cagttgcgcc ttttaaagtc 1560 accaagttga taacagatct tgatagtatg caagtatacg ctcaagcgcg ctcggataga 1620 tgggtgctag ataggttata tgggaacttg aaagctgtgg gacagtgtcc agcacaactt 1680 gttacaaaac acgttgtgaa gggaaaatgc atgctttttg atttgtatct tcaacaagat 1740 tacgatgtta gaagcttttt caaaccttta atgggggcat atgggaagag tagattgaac 1800 aaagaagcat acaacaagga tttattcaag tatgcaactc caatcaatgc aggagatgtg 1860 tgtcacaaaa catttgagca ggcagagtta gcagttgtcg acatgcttaa agcaaatggt 1920 tttcacaagt gtaactacat cacagacccg gaggaaattt tcaaagcact caacatgaag 1980 gcagctgttg gagcaatgta cagtggaaag aagaaagact attttgatgg tatgggcgat 2040 gaggatatcg aaaatcttct ttttcacagc tgcaagcggc tgtacatggg gcaaaaaggg 2100 ctttggaatg gctccttaaa ggctgagctt aggcccatgg caaaagttga attgaataaa 2160 acaaggactt ttacagcagc cccacttgac acacttttgg gtggtaaaac atgtgttgat 2220 gattttaaca acatgtttta caacaaccat ctcaagtgcc catggacagt aggtatcaca 2280 aaattctatc aaggatggga tagattgtta acatctttac ctgaagattg gatttattgt 2340 gatgcggatg gttctcaatt tgacagttct ctgtcaccct atctcattaa tgctgtcctc 2400 aacatacgga gggaattcat ggaagagtgg gacatagggg accaaatgct tcgaaatttg 2460 tacacagaga ttgtatacac gccgattcta acaccagatg gaaccatagt gaagaaattc 2520 aaaggaaaca atagtgggca accctcaacc gtcgtggaca atacactgat ggttgtgttg 2580 gccgtctact acactttgtt gaaattgggt gtctcagaac tcgagatcag tgaacggtgc 2640 gtattctttg caaatgggga tgatctactg atagctatga gaccagatac agctcatctt 2700 ttggataact tcggtgagtg ttttgctgag ctcggactta actatgactt ctcatcaagg 2760 acaactaaga gagaggaatt gtggttcatg tctcactgtg gaatcaaacg agatggaata 2820 tacattccca agctcgagcc tgaacgaata gtatctattc ttgaatggga tagatcacat 2880 gagcctatac acagacttga agcaatttgt gctgcaatgg ttgaagcgtg gggatatgac 2940 gagcttctcc atcaaattag gaaattttat gcatgggtct taggacaagc accatacagt 3000 gaactagcac gaaatggaaa ggccccatat attgctgaaa ctgcacttaa atcactgtat 3060 actggagaac aacctagcgc tgacgatctc agcgagtaca cacgtgtcct taacgagatg 3120 tatgatgata gcctccttca agacaatgat ttaacggtgt atcatcaatc tggtaacccc 3180 cctgaattta aagatgcagg tgcgaaccca ccagcaccaa agccaaaagg ggcatataca 3240 gcaccagaaa tcacagaaat tactgagccg gaggatccca agcaagctgc gcttcgtgaa 3300 gctagacaga aacaacctgc tgtcacaccc gaatcatacg gtagagatac aggtgagaaa 3360 cctatgcgct ctgtttcacc acaaagggtg aaggacaagg atgtcaacgt tggtacgaca 3420 ggtacatttt tagtaccacg agttaagctc catactagta aaatgcgcca acctagagtc 3480 aatggaatct cagtagtgaa cttacaacac cttgcaacct atgaacctga gcaacataac 3540 attgggaata cacgctcaac ccaggaacag tttcaagcat ggtatgaagg tgtcaagggt 3600 gattatggtg ttgatgacgc tggaatgtca atcttattga atggattgat ggtatggtgc 3660 atagagaatg gaacatctcc aaatataaat ggcgtttgga cgatgatgga tggggatgaa 3720 caagtgacgt accccataaa gccattactg gatcatgcag tgcctacttt taggcaaatc 3780 atgacacact tcagtgacgt tgctgaagcg tatatagaaa tgaggaatcg taccaaggca 3840 tatatgccta ggtatggatt acaacgtaat ttgactgata tgagtcttgc gcgatatgca 3900 tttgatttct atgagctgca ctcgacaaca cctacacgtg ctaaagaagc acacatgcag 3960 atgaaagcag ctgcacttaa gaatgcgcat aatcggttgt ttggtttgga tggaaacgtc 4020 tccacgcaag aagaggatac ggagaggcac actgcgactg atgttactag aaatatacat 4080 aacctcttag gaatgagggg tgtgcactag gtgaaacttt gcactgtatt tatttactta 4140 tgtggttttt agtatgcctt tatttaaatt cgtgttcttc agtcccgaca gaaatggttg 4200 ggtgtattga cagagtgggc ttttagcctg gtccatacac ttgagaagtt tctggtctat 4260 tacgtatcat aagggactct taaaagtgag gagtacctcg taagaaaagc ctttttggtt 4320 cgtgatcgag cc 4332 //