ID EF155973; SV 1; linear; genomic RNA; STD; VRL; 7781 BP. XX AC EF155973; XX DT 25-JAN-2010 (Rel. 103, Created) DT 19-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sweet potato mild mottle virus isolate R125MPG polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato mild mottle virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-7781 RX DOI; 10.1099/vir.0.016089-0. RX PUBMED; 19923261. RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.; RT "Recombination and selection pressure in the ipomovirus sweet potato mild RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in RT the centre of evolution in East Africa"; RL J. Gen. Virol. 91(Pt 4):1092-1108(2010). XX RN [2] RP 1-7781 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-NOV-2006) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; c4dbe0bf023746fafcba745b05fae3a4. XX FH Key Location/Qualifiers FH FT source 1..7781 FT /organism="Sweet potato mild mottle virus" FT /host="Ipomoea cairica" FT /isolate="R125MPG" FT /mol_type="genomic RNA" FT /country="Uganda:Mpigi" FT /isolation_source="leaf" FT /db_xref="taxon:41459" FT 5'UTR 1..139 FT CDS 140..>5867 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2SLM7" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR025910" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D2SLM7" FT /protein_id="ACQ45598.1" FT /translation="MGKPKLTYRQCIAKWGKAALEAQNNGSKRSVTVGTHQIAANVFAF FT YDAKDYHLFTMGKRGGLTPAAEQLRIAIERGTIYNVQYNCHLCPDCDAIVDSEEGWYCE FT DCGSQFNKRDDNVLENKNDVARALGGWTEYEDATWASFEAAKADMLEVAPTVGQLEKEI FT RAIEKSAGKRLTAYEEELLEELAYKLDVAKMNEEEQEEATEETTFSISSDEFPTLEGPQ FT DVEVNEITEEDTEEITIEVTGEIEKFIESKTTHEKNAEPVKNAVNAHVVATPVVTLSVA FT KSGTVTSKEKLIEESKKIVWVTKPKTPATIPATPSESAVWDAKPRLASALPTVEPVTKP FT PVEACNDVINIGAMVCPITVSSVESHSHQNEKLNESLDAQVDGATKEEEPVIKYNITFG FT SFNYEVSAKGEQVQAAVQLDEMIEGPDIEPILICQTGSSHKHETKKAAKGLLVQDRFSV FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGSYKNAALRLLKATKVQVFYDGIKDIFEC FT PYCHVSSNELEGLNGDNCEKCKDLFYKHIDDPRKVEEEYLMIPLVPIDQHVHEEHSIIS FT KAKWEAHESICEGEVNIFKVFDGKPTASKKKFKTMQALNVANIPLDDFMQELVEICLER FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFYHKNKLCLCGGIDREKKV FT RSSEVRPGWSGVILHRNQVAECDWSKFVFIDDMCVVQGRNLITDKVENALEKKGASRLK FT QIQFYASSVIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC FT CFRVIKSKRTDVVNALNKAKQRGERDEFIYDELIKLFELQAPPPYKIATITNDDDMLRT FT LGLGGDLYSGRLSLIMQHLQGLHTSISMLHQSLAGAQSDQQIDRQALHNQVRILHQSNE FT EHMPFLKKAMDEIQLLNATDQVANARELYLDTRATSTGDFDILRKYQSIYEFFPNIMSR FT ANKAGVEVIKSETSLSKAFALMNSAKSMDAIHTLIGEDIIEHVNGACLLKNDKTFFSIG FT CKQGVDGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV FT GFVNEDEMEFYKSQMNQIVLNLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHAN FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVGGIYDWVTKKNAFID FT LFEHHPENIFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF FT QSVDDVCVEYAASMREIIEEHADIHGLRDSVVDRMVHAYHNEVREANKYELVDRILEKN FT IGLIAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLNAQKLFDEANDRAYGKQSWNLR FT VIWGACKEVLYAVTRGAYVRVKGTTVRCADAVVYGFYGRTRAIVTSWASEAWGAIFTSC FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEELGGGELYVEQHGKREEAFLFKICAIF FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPDDKVEQDLKESLKFTSFE FT IEVPNVVLSQDDMTFERWFQHQIQYGNVCADPIYSGPLRMLAITENSARELAMNIRTSG FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK FT KKIVKLSATHAGMDHECETRHKIKVETLSEMPIESWVSMQGSGVVGDATSVGDVILVFV FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT FT FNIDVVVDFGEKISPNLSSDERCITLGRQRISRAE" FT mat_peptide 140..2413 FT /product="proteinase P1" FT mat_peptide 2414..3772 FT /product="helper component proteinase HC-Pro" FT mat_peptide 3773..4654 FT /product="P3 protein" FT mat_peptide 4655..4810 FT /product="6K1 protein" FT mat_peptide 4811..5866 FT /product="cytoplasmic inclusion protein CI" FT gap 5868..5967 FT /estimated_length=unknown FT CDS <5968..7473 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2SLM8" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2SLM8" FT /protein_id="ABO92962.1" FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL FT INCPRAVASAISEHFKDAFADLSLNYDFDHVCDSITDVDFMSHSFMWLDSEQMYIPKLD FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMVEIEKFAHFWAEEHGLNDVLME FT REKIKDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQQEMEDLDADTTI FT TVVQRETQKARIREQIEALRAQQIVRPSEAQLQPDVTPTQIVTFEPPRVTGVGALWIPR FT QQRNYMTPAYIEKIQAYAPHSNLIESGLASEAQLTSWFENTSRDYQVSMDVFMSAVLPA FT WIVNCIINGTSQERTKEHTWRAVIMANMEDQEVLYYPIKPIIVNAQPTLRQVMRHFGEQ FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMQLTTKQMEVKHQIIAAN FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD" FT mat_peptide 5968..6564 FT /product="nuclear inclusion body protein NIb" FT mat_peptide 6565..7470 FT /product="coat protein CP" XX SQ Sequence 7781 BP; 2391 A; 1385 C; 1875 G; 2030 T; 100 other; aaaataaaaa tgatatagag aaaatttgaa agacaagtat gaatatagct aacttatccg 60 caactcagtt ttattttaaa gactttatct caattttatc gacctgtggt gtccgcttag 120 aaacggatca cacgcagaaa tggggaaacc caaactcact tacagacaat gcattgctaa 180 gtggggaaaa gccgcacttg aagcgcaaaa taacggatcg aaaagaagtg tcactgttgg 240 cactcaccaa atcgcggcaa atgtttttgc gttctatgac gcaaaagact accatctttt 300 taccatggga aaaagaggtg gattgactcc agcagctgag caattgagaa tcgccatcga 360 acgaggaaca atttataacg tgcagtacaa ctgccactta tgtcctgatt gcgatgcaat 420 tgtcgattct gaggagggat ggtattgtga ggattgcggt tcgcaattca acaagcgcga 480 tgacaacgta cttgaaaata aaaatgatgt cgcacgcgct cttggcggtt ggactgaata 540 cgaagacgcc acctgggcgt cgtttgaagc tgctaaagct gatatgcttg aagttgcacc 600 aactgtaggt caacttgaga aagaaatcag agccatagaa aaatcagcgg gtaaaagact 660 cactgcttac gaggaggaat tgcttgaaga gctagcctat aagcttgatg tggccaaaat 720 gaatgaggaa gagcaagaag aagccaccga ggagactact ttctcaatct ccagtgacga 780 atttccaact ctcgaggggc cacaggacgt ggaagttaat gaaattactg aggaagatac 840 tgaagaaatc acgattgaag tcacgggaga gattgaaaag tttatagagt ctaaaactac 900 acatgagaaa aatgctgaac cagttaaaaa cgctgttaac gcgcatgtgg tcgcgacacc 960 tgttgtgact ctaagtgtgg ccaagtctgg gacagtaact agtaaggaga agttaattga 1020 agaatcaaag aaaattgtgt gggtaacaaa gccaaaaact cctgctacaa ttcctgccac 1080 gccgtctgag tcggctgtct gggatgctaa gcccaggcta gcatccgcac ttcccactgt 1140 tgaaccagtt accaagccac cggtggaagc ttgcaatgat gtgatcaata taggtgccat 1200 ggtgtgtcct atcacggtgt catcagttga atcacatagc caccaaaatg agaagctcaa 1260 tgagtcctta gatgcacaag ttgatggcgc aacgaaggaa gaggaaccag tgatcaagta 1320 caatataact tttggctcat tcaattatga agtaagcgct aaaggggaac aagtgcaagc 1380 tgctgttcaa cttgatgaga tgatagaagg acctgacatt gaacccattc tgatttgcca 1440 gacaggaagt tcccataaac atgaaaccaa gaaagccgca aaagggcttc tcgttcagga 1500 tagattttca gttattggga ataaggttct gtgcaagtcg tttcctgcct tcaagaattt 1560 catgaatgag acaagattag gaggaattta cagaacaaga aaaggaagtt ataaaaacgc 1620 tgcattgcgt ttattgaagg ccaccaaagt tcaagtcttt tatgatggca taaaggatat 1680 tttcgagtgt ccatattgcc acgtgagcag taatgaactg gagggtctta atggagataa 1740 ttgtgaaaaa tgcaaagatc ttttttacaa acacattgat gatccaagga aagttgagga 1800 ggaatatctt atgattcctc tcgtgcccat cgatcagcat gtgcatgaag aacatagcat 1860 cattagtaag gctaaatggg aagctcacga atctatatgt gaaggagaag tgaatatttt 1920 taaggttttt gatggcaaac ctactgcaag caagaagaaa ttcaaaacaa tgcaagcact 1980 gaatgtcgca aatataccgc ttgatgactt tatgcaagaa ttagttgaaa tttgtcttga 2040 gagaaacact cctattgaaa tcattggggg tgtgaagtct tttaatgtgg ttaagttaag 2100 gcacactacg agagatatta gcaagtctgg tgaagatgat atgtatccaa ctgaaaggga 2160 atggttctat cacaagaata aactatgtct gtgtggtgga attgatcgtg agaagaaagt 2220 cagaagttcc gaggtgcgtc caggttggag tggagtgatc ttacatagga atcaagtggc 2280 ggaatgcgat tggagcaagt ttgttttcat tgatgacatg tgcgtggtgc aaggtagaaa 2340 cctgatcacg gataaggttg agaatgcgct tgaaaagaag ggggccagta gacttaagca 2400 gatacaattc tatgcaagtt ctgttatacc caacttcaag gacgaattcg acagagctag 2460 tcgtctaaaa gctgatcacg aaccagacga gtcgtctaac aatgaactca ttggtaggct 2520 ggctaaactt gttgcagcag tcattccaaa aggccaccta tattgcaaaa catgctgttt 2580 tagggttatc aagagcaagc gcacagatgt agttaacgca ctaaataagg ctaagcagcg 2640 tggtgaacgg gatgagttca tttatgatga gctcataaaa ctgtttgagc tacaagcacc 2700 accaccgtat aagattgcaa cgatcaccaa cgatgacgat atgttgcgaa cattaggatt 2760 gggtggagac ctatatagtg ggcgactgag tctcataatg caacacttgc aagggttgca 2820 tacgtctata tcaatgcttc accaatcgct tgcgggagct cagagtgacc aacaaattga 2880 caggcaagcg ctccacaacc aagtgcgaat tttacatcaa agcaatgagg agcatatgcc 2940 tttcctgaag aaggcaatgg atgaaattca gcttttaaat gcaacagatc aggttgcaaa 3000 tgctcgggaa ttgtacttgg atactagggc gactagtact ggggatttcg acatcttacg 3060 aaaatatcaa agcatatatg agttctttcc caatatcatg agccgagcca ataaagcagg 3120 ggtggaagtt attaaatctg aaacatcatt gagcaaagct tttgccctta tgaatagtgc 3180 taagtcgatg gacgctattc atacgctcat aggggaagac atcatagaac acgttaatgg 3240 ggcttgctta ctgaagaacg ataagacgtt tttctcaatt ggttgcaagc aaggtgttga 3300 tggtagcaaa atgtatggcc cgctttgtcc gactaagcag catgtaagaa ttcaccgggt 3360 tgaatctaac atgcaaattc ctttgccaac attccacgat gcaactgtct gggagtttaa 3420 cgaaggttat tgctacgcta atcaatttgc tataatggtt ggttttgtca atgaagacga 3480 aatggagttt tataagagcc aaatgaacca aattgtgttg aacttagggg cttggccaac 3540 ttttgagcaa tatttaattg agctacgagc aatctcgctt gactacccaa aagtcagagg 3600 gtgtccagct gctattcatt tagtttctca tgcaaacaag cttattcatg ttttgggaca 3660 atttggaaca ataaatcaag gttggcatgc acttgaagta gcaactgtgg gcgagcttgt 3720 agacttgtgc cataagaaag ttgaaggtga gatgttaact tacaaagttg gtggcattta 3780 tgactgggtg actaaaaaga atgctttcat tgatctattt gaacaccatc cagaaaacat 3840 attcaaaatt tgcacatcac catcagtgtt gtggttattt gctcgcagct gcgaaaagca 3900 tgatttcatc aactacatca tggccagaga ccattcattg gtgggtttgt tcattaaatt 3960 ggaatatgtt ggcaaacatc ttcatatttt ccaaagtgtc gatgatgttt gtgttgagta 4020 cgcggcgtct atgagggaaa ttattgaaga gcacgctgat attcatgggc tgcgggattc 4080 agtggtggat agaatggttc acgcatatca caatgaggtg agagaagcaa ataagtatga 4140 gctagttgat agaattcttg aaaaaaacat tggattaatc gcaaaagaaa tttcatcgcg 4200 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc agcgtttgaa 4260 gttaatgcca cactccttga atgcgcagaa actattcgac gaggcaaacg atcgtgcgta 4320 cggaaaacaa tcatggaatt tacgcgtgat ttggggtgcg tgcaaggaag tgttatatgc 4380 agtcacacgc ggagcttatg taagagtcaa aggaacaact gtgcgctgtg ccgacgccgt 4440 agtgtatggc ttttatggta gaacacgagc gatagtcaca agttgggcta gtgaagcatg 4500 gggagcaatt tttacgtcgt gtctgagagc attagttgtt atggttgtca cggcatacat 4560 ttcaacttgg attcctaaaa ttaggaagat gattaagcgt gagaagaaac aatttgaaga 4620 acttggaggc ggagagttat atgtggagca acatggcaaa agagaggaag cgtttttatt 4680 caagatttgc gccatctttg cacttatagc aggcatagtt gattacgaat ggggagcagc 4740 tgcatgcgct acaatgaata aagttaagag tatatgcact gtccttggat ctgttgggat 4800 tgagagccac gctaacgaac ctgatgataa agttgagcag gacttaaagg aatcgcttaa 4860 atttacatct ttcgaaattg aagtaccaaa cgtggttcta tcacaagatg atatgacttt 4920 tgaaaggtgg tttcaacatc aaatacaata tggcaacgtg tgtgctgacc ctatctatag 4980 tggtccgcta cgcatgctag caattacaga aaattctgca agagagctag caatgaacat 5040 tcgcacatca ggggaaactg acttgcgtgt ttatagtggc gttggtggag gaaaatcaac 5100 aaggttaccc aaggaactta gcatgtttgg gcatgtgcta atttgtgttc cgacgagagt 5160 tttggcagaa agcttgttaa catcattcat ggtactattt aatatggatg ttaatgtggc 5220 ttatcgagga aggatacaca ctggtaacgc accaatcaca ataatgactt atggttatgc 5280 attcaacttc ttggtgcata aaccaatgga attgaaccga tatgattatg tgttactaga 5340 tgaaattcac accaatcctg ttgaattcgc acctctgttc tctttcatca aaactacgga 5400 tccaaagaag aagattgtta agctgtcagc aacccacgct ggtatggacc acgagtgtga 5460 aaccaggcac aagattaaag tagaaaccct gagcgaaatg ccaattgaaa gctgggtttc 5520 catgcaaggt tctggggttg ttggtgacgc aacatctgtt ggtgatgtga ttttggtctt 5580 tgtggcatca tttaaggatg tcgatacatg tgccaatgga ctgcgatcta aaggcttcaa 5640 agttctgaag gttgatagta gaaacttcag acgtgatgca gatgtggata agcaaatcca 5700 atcattgggt gaagggaaga aattcatagt cgccacaaat atcattgaaa atggagtgac 5760 atttaacatt gatgttgtcg ttgattttgg cgagaaaatt agccctaatc tttcgagcga 5820 tgaacgatgt atcacactag ggaggcagag aatatcgaga gcagaaannn nnnnnnnnnn 5880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5940 nnnnnnnnnn nnnnnnnnnn nnnnnnnggt aataatagtg ggcagccctc aacagttgtc 6000 gataacacgt tgatcttgat gattgcgatg gagtatgcga tagctaaggt ttttgtcaca 6060 cgccctgaca tcaagtatgt ctgtaatggg gatgacctct taattaattg cccgagggct 6120 gttgcaagcg ccattagtga gcatttcaaa gatgcattcg cagacttaag cttgaactat 6180 gattttgatc acgtttgtga ttcaattaca gacgttgatt ttatgagtca cagcttcatg 6240 tggttagatt ctgagcaaat gtatataccg aagctggaca aggagcgaat cgtggcaata 6300 ttggagtggg aaagaagtga tgagcaattc agaacaagga gcgccctgaa cgctgcttat 6360 attgaaagtt ttggatatga agatttgatg gttgagattg agaaatttgc tcacttttgg 6420 gctgaagagc atggtctcaa tgacgtcttg atggagcggg agaaaattaa agacttgtac 6480 gttaatgaag actttgatgc gtcagccttt gagaagttct atccggaaac attttcacca 6540 tttgacgttt atgttgaacc acatgcatcg acgtccaaga caatcgaaga attgcagcaa 6600 gaaatggagg atttggatgc agacacaaca atcactgtgg tccaaaggga aacacagaag 6660 gcaaggataa gagaacaaat cgaggcactt agggcacaac aaattgtgag accttctgaa 6720 gcacagcttc agcctgacgt aactcccact caaatagtca cgtttgaacc accaagagtc 6780 actggagttg gcgctttatg gattccgcgc caacaaagaa actacatgac gccagcttac 6840 atcgagaaga tacaggctta tgctccacat tcaaacttga tagaatctgg actagctagt 6900 gaagctcagt tgactagttg gttcgagaac acaagtaggg attaccaagt tagtatggat 6960 gttttcatga gtgcagtact gccagcatgg attgtcaatt gcataatcaa tggaacgtct 7020 caggagcgca ctaaggagca cacatggagg gctgtaatca tggcgaatat ggaggaccaa 7080 gaggtgcttt attaccctat caagcccata attgtaaatg ctcagccaac tttgaggcag 7140 gtgatgcgcc atttcggaga acaagccgtt gctcaataca tgaacagcct tcaagttgga 7200 aagcctttta cagtgaaagg tgccgtgact gctggttacg ctaacgttca agatgcttgg 7260 ctaggtatcg actttcttcg ggacacaatg cagttgacga caaaacagat ggaagttaag 7320 catcaaatta ttgcagcgaa cgtcacaagg cggaaaatcc gtgttttcgc tcttgcagca 7380 ccgggagatg gcgacgaact agacacagaa aggcacgtcg tcgacgatgt ggctaggggc 7440 cgtcatagtc tgagaggagc tcaactcgac taaatgagca cgttatcttt aatttcaact 7500 acgtgttttt atcttaatta tgtcttgtgc tttgtgtttg tttgttgtgg cacttgaacc 7560 aggtacagct ggcaagtgtt tcggcatggt gtggttagac aattggttcg caccggtggt 7620 ctaagaagcg ctatgtatca cgtggttggt tagttcataa cttgtatgga ttaatcaaga 7680 agcgtctatg gcccagaagg gcaccagaaa atggttacgt cattcgtggc gtaatcaatt 7740 tttggagttt ggctaggtaa cttgtcgcct atccaaaagc c 7781 //