ID EF155971; SV 1; linear; genomic RNA; STD; VRL; 7781 BP. XX AC EF155971; XX DT 25-JAN-2010 (Rel. 103, Created) DT 19-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sweet potato mild mottle virus isolate R58LUW polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato mild mottle virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-7781 RX DOI; 10.1099/vir.0.016089-0. RX PUBMED; 19923261. RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.; RT "Recombination and selection pressure in the ipomovirus sweet potato mild RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in RT the centre of evolution in East Africa"; RL J. Gen. Virol. 91(Pt 4):1092-1108(2010). XX RN [2] RP 1-7781 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-NOV-2006) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 32ab68c46b0ea7d90e97a3be29d219f3. XX FH Key Location/Qualifiers FH FT source 1..7781 FT /organism="Sweet potato mild mottle virus" FT /host="Ipomoea indica (Ipomoea acuminata)" FT /isolate="R58LUW" FT /mol_type="genomic RNA" FT /country="Uganda:Luwero" FT /isolation_source="leaf" FT /db_xref="taxon:41459" FT 5'UTR 1..139 FT CDS 140..>5867 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2SLM3" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR025910" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D2SLM3" FT /protein_id="ACQ45596.1" FT /translation="MGKSKLTYKQCIAKWGKAALEAQNNGSKRSVTVGTHQIAANIFAF FT YDAKDYHLFAMGKRGGLTPAAEQLRIAIERGTIYKVQYDCHFCPDCDAIVDSEEGWFCE FT DCGSQFNKRDDNVLDNKNDVARALGGWTEYEDAIWASFEAAKADMLEVAPTVGQLEKEI FT RAIEKSAGKRLTAYEEELLEELAYKLDVAKMNEEKQEKVPEETTFSISSDDFPALKEPQ FT GVAVNENTEEDNEEIMIEVTGEIEEPIEFKTTHEEIAEPVINVANAHVVATPVVTLSVA FT KSGTVIGKEKLIEKPKKTTWVAKPKISATVITTPSESAVWDAKPRLASALSTVEPVTKP FT TVRACNDVIYIGAMACPIMMSSVESHIHQNEKLIESLDAQVDGATKEEEPVIKYNITFG FT SFNYEVSAKGEQVQAAVKLDEMIEGLDTEPILICQTGSSHKHETKKAAKGLFVQDRFSV FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGSYKNAALRLLKATKVQVFYDGIKDIFEC FT PYCHVSSNELEGLNGDNCEKCKDLFYKHIDDPRKVEEEYLMVPLVPIDQHVHEEHSIIS FT KAKWEAHESICEGEVNISKIFDGKPTASKKRFKTKQALNVANIPLDDFMQELVEICLER FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFCHKNKLCLCGRIDREKKI FT RSSEVRPGWSGVILHKNQVAECDWSKFVFIDDMCVVQGRNLITNKIENALEKKGSNRLK FT QIQFYASSVIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCRTC FT CFRVIKSKRIDVANALNKAKQRGERDEFIYDELIKLFELQAPPPYKIATITNDDDMLRT FT LGLGGDLYSGRLSLIMQHLQGLHTSISMLHQSLAGAQSDQQIDRQALHNQVRILHQSNE FT EHMPFLKKAIDEIQLLNATDQVANARELYLDTRATSTGDFDILRKYQSIHEFFPNIMSR FT ANKAGVAVIKSETSLSKAFALMNSAKSMDAIHTLIGEDIIENVNGACLLKNDKTFFSIG FT CKQGVDGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV FT GFVNEDEMEFYKSQMNQVVLNLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHAN FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKRVEGEILTYKVGGIYDWVTKKNAFID FT LFEHHPENIFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF FT QSVDDVCVEYAASMREIIEEHADIHGLRDSVVDRMVHAYHNEVREANKYELVDRILEKN FT IGLIAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLNAQKLFDEANDRAYGKQSWNLR FT VIWGACKEVLYAVTRGAYVRVKGTTVRCADAVVYGFYGRTRAIVTSWASEAWGAIFTSC FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEELGGGELYVEQHGKREEAFLFKICAIF FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPDDKVEQDLKESLKFTSFE FT IEVPNVVLSQDDMTFERWFQHQIQYGNVCADPIYSGPLRMLAITENSARELAMNIRTSG FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK FT KKIVKLSATHAGMDHECETRHKIKVETLSETPIESWVSMQGSGVVGDATSVGDVILVFV FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT FT FNIDVVVDFGEKISPNLSSDERCITLGRQRISRAE" FT mat_peptide 140..2413 FT /product="proteinase P1" FT mat_peptide 2414..3772 FT /product="helper component proteinase HC-Pro" FT mat_peptide 3773..4654 FT /product="P3 protein" FT mat_peptide 4655..4810 FT /product="6K1 protein" FT mat_peptide 4811..5866 FT /product="cytoplasmic inclusion protein CI" FT gap 5868..5967 FT /estimated_length=unknown FT CDS <5968..7473 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2SLM4" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2SLM4" FT /protein_id="ABO92960.1" FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIRYVCNGDDLL FT INCPRATASAISEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLDAEQMYIPKLD FT KERIVAILEWERSDEQFRTGSALNAAYIGSFGYEDLMAEIEKFAHFWAKKHGLNDVLMD FT REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQKEMEDLDADTTI FT TVVQRETQKARIRDQIETLRAQQIVRPTEAQLQPDVNPTQIVTFEPPRVTGVGALWIPR FT QQRNYMTTAYIEKIKAYVPHSNLIESGLASEAQLTSWIENTSRDYQVSMDVFMSAILPA FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMQLTTKQMEVKHQIIAAN FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD" FT mat_peptide 5968..6564 FT /product="nuclear inclusion body protein NIb" FT mat_peptide 6565..7470 FT /product="coat protein CP" FT 3'UTR 7476..7781 XX SQ Sequence 7781 BP; 2378 A; 1386 C; 1886 G; 2031 T; 100 other; taaataaaaa tgatatagag aaaatttgaa agaaaagtgt gaatttagca aacttattcg 60 caattcagtt ttactttaaa tactttatct caattttatc gaactgtggt gtccgcttag 120 aaacggatca gacgcagaaa tggggaaatc caaactcact tacaaacaat gcattgcgaa 180 gtggggaaaa gccgcacttg aagctcaaaa taacgggtcg aaaaggagtg taactgttgg 240 gactcatcaa attgcggcaa atatttttgc gttttacgac gcaaaagact accatctatt 300 tgccatgggc aaaagaggtg gactgactcc agcagctgaa caattaagaa ttgcaatcga 360 gcgaggaacg atttacaaag tgcagtacga ctgtcacttc tgtcccgatt gtgatgcaat 420 tgtcgactct gaagaaggat ggttttgcga ggattgcggt tcgcaattca ataagcgcga 480 cgacaacgtg cttgataata agaacgatgt cgcacgtgct cttggcggat ggactgaata 540 cgaagacgcc atctgggcgt cgtttgaggc tgctaaagct gatatgctcg aagttgcgcc 600 aactgtaggt cagcttgaga aagagatcag agccatagag aaatcagcgg gtaaaaggct 660 cactgcttac gaagaggaac tgcttgaaga gttggcctat aagcttgatg tggccaagat 720 gaatgaggaa aagcaagaaa aagtccccga ggagactact ttctcaatct ccagtgacga 780 ttttccggct cttaaggagc cacaaggcgt ggcagttaat gaaaacactg aggaggataa 840 tgaagaaatc atgattgaag tcacgggaga gattgaagag cctatagagt ttaaaactac 900 ccatgaggaa attgctgaac cagttataaa cgttgctaac gcgcacgtag tcgcgacacc 960 tgtcgtgact ctaagtgtgg caaagtctgg aacagtaatt ggtaaggaga agctaattga 1020 aaaaccaaag aagaccacgt gggttgcaaa gccaaaaatt tctgctacag ttattactac 1080 gccgtctgag tcggctgtct gggatgctaa gccaaggcta gcatctgcac tttccactgt 1140 tgaaccagtt accaagccga cggtgagagc ttgcaatgat gtgatctata taggtgccat 1200 ggcgtgtcct atcatgatgt catcagttga atcacatatt catcaaaatg agaagctcat 1260 tgagtcccta gatgcacaag ttgatggcgc aacgaaggaa gaggaaccag tgatcaagta 1320 caatataact tttggttcat tcaattatga agtaagcgca aaaggggaac aagtgcaagc 1380 tgccgttaaa cttgacgaga tgatagaagg acttgacact gaacccattc tgatttgcca 1440 aacaggaagt tcccataaac atgaaaccaa gaaagctgca aaagggcttt tcgttcagga 1500 tagattttca gttattggga ataaggttct gtgcaagtcg tttcctgcct tcaagaattt 1560 catgaatgag acaaggttgg gagggattta tagaacaaga aaaggaagtt ataaaaacgc 1620 tgcgttgcgc ttattgaagg ccaccaaagt tcaagtattt tacgatggga taaaggacat 1680 ttttgaatgt ccttattgcc acgtgagcag taatgagcta gagggcctta atggagataa 1740 ttgcgaaaaa tgcaaggatc tgttttataa acacattgat gacccaagaa aagttgaaga 1800 ggaatatctt atggttcctc tcgtgcctat cgaccagcat gttcatgagg aacatagcat 1860 catcagtaag gctaaatggg aggctcatga atctatatgt gaaggagaag tgaacatttc 1920 taagattttt gatggcaaac cgactgcaag caagaagagg ttcaaaacta aacaagctct 1980 aaatgttgca aatataccac ttgacgattt tatgcaagaa cttgttgaaa tttgtcttga 2040 gagaaacacc cccattgaga tcattggggg tgtgaaatct tttaatgtgg ttaagttaag 2100 gcatactacg agagatatca gcaagtctgg tgaggatgac atgtatccaa ctgaaaggga 2160 gtggttctgc cacaagaata agctatgtct gtgtggtagg attgatcgtg agaagaaaat 2220 tagaagttcc gaggtgcgcc caggttggag tggagtaatc ttacataaga atcaagtggc 2280 ggagtgtgat tggagcaagt ttgttttcat tgatgatatg tgcgtggtgc aaggtagaaa 2340 cttgatcacg aataagattg agaatgctct tgaaaagaaa gggtctaata gacttaaaca 2400 gatacaattc tatgcaagtt ctgttatacc caacttcaag gatgaatttg acagagctag 2460 ccgtctaaaa gctgatcatg aaccggacga gtcgtctaac aatgaactca ttggtaggct 2520 ggctaaactt gttgcagcag tcattccaaa aggccaccta tattgcagaa catgctgttt 2580 tagggttatc aagagcaagc gcatagatgt agccaacgcg ctaaataagg ctaagcagcg 2640 tggtgaacgg gatgagttca tttatgatga gctcatcaaa ctctttgagc tacaagcacc 2700 accaccctat aagattgcaa caatcaccaa tgatgacgat atgttgcgaa cattaggatt 2760 gggtggagat ttatatagtg ggcgattgag tctcataatg caacacttgc aagggttgca 2820 tacgtcaata tcaatgcttc accaatcgct tgcgggggct cagagtgacc aacaaattga 2880 caggcaagcg ctccacaacc aagtgcggat tttacatcag agcaatgaag agcatatgcc 2940 tttcctgaag aaggcaatcg atgaaattca gctgttaaat gcgacagatc aggttgccaa 3000 tgctcgggaa ttgtacttgg atactagggc gactagtact ggggatttcg acatcttaag 3060 gaaatatcaa agcatacacg agttctttcc caatatcatg agccgagcca ataaagcagg 3120 ggtggcagtt atcaaatctg aaacatcatt gagcaaagcc tttgccctta tgaatagtgc 3180 taagtcaatg gacgctatcc atacgctcat aggggaagac atcatagaaa acgtcaatgg 3240 ggcttgctta ctaaagaatg ataagacgtt tttctcaatt ggttgcaagc aaggtgttga 3300 tggtagtaaa atgtatggtc cgctttgtcc gactaaacaa catgtaagaa ttcaccgagt 3360 tgaatctaac atgcaaattc ctttgccaac attccacgat gcaactgtct gggagtttaa 3420 tgaaggttat tgctatgcca atcaatttgc tataatggtt ggttttgtca atgaagacga 3480 aatggagttc tataagagcc aaatgaacca agttgtattg aacttagggg cttggccaac 3540 ttttgagcaa tatttaattg agctacgagc aatttcactt gactacccaa aagttagggg 3600 gtgcccagct gctattcatt tagtttctca tgcaaacaag cttattcatg ttttgggaca 3660 atttggaaca ataaatcaag gttggcatgc gcttgaagta gcaactgtag gcgaacttgt 3720 agacttgtgc cataagagag ttgaaggtga gattttgact tacaaagttg gtggcattta 3780 tgactgggtg actaaaaaga acgctttcat tgatctattt gaacaccatc cagaaaacat 3840 attcaaaatt tgcacatcac catcagtgtt gtggttattt gctcgcagct gcgaaaagca 3900 tgatttcatt aactacatca tggccagaga ccattcattg gtgggtttgt tcattaaatt 3960 ggaatatgtt ggcaaacatc ttcatatttt ccaaagtgtc gatgatgttt gtgttgaata 4020 cgcggcgtct atgagggaaa ttattgaaga gcacgctgat attcatgggt tgcgggactc 4080 agtggtggat agaatggttc acgcatatca caatgaggtg agagaagcaa ataagtatga 4140 gctagtcgat agaattcttg aaaaaaacat tggattaatc gcaaaagaaa tttcatcgcg 4200 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc agcgtttgaa 4260 gttaatgcca cactccttga atgcgcagaa actattcgac gaggcaaacg atcgtgcgta 4320 cggaaaacaa tcatggaatt tacgcgtgat ttggggtgcg tgcaaggaag tgttatatgc 4380 agtcacacgc ggagcttatg taagagtcaa aggaacaact gtgcgctgtg ccgacgccgt 4440 agtatatggc ttttatggta gaacacgagc gatagtcaca agctgggcta gtgaagcatg 4500 gggagcaatt tttacgtcgt gtctgagagc attagttgtt atggttgtca cggcatacat 4560 ctcaacttgg attcctaaaa ttaggaagat gattaagcgc gagaagaaac aatttgaaga 4620 gcttggaggc ggagagttgt atgtggagca acatggcaaa agagaggaag cgtttttatt 4680 caagatttgc gccatctttg cacttatagc aggcatagtt gattacgaat ggggagcagc 4740 tgcatgcgct acaatgaata aagttaagag tatatgcact gttcttggat ctgtcgggat 4800 tgagagtcac gctaatgagc ctgacgacaa agttgagcaa gacttaaagg agtcccttaa 4860 atttacatct tttgagattg aagtgccaaa cgtggttcta tcacaagatg atatgacttt 4920 tgaaaggtgg ttccaacatc agatccaata tggcaatgtg tgtgcggatc ctatctatag 4980 tggtccacta cgcatgctag caattacaga aaattctgcg agagagctgg caatgaacat 5040 tcgcacatca ggggaaactg acttgcgtgt ttatagtggc gttggtggag gaaaatcaac 5100 aaggttgccc aaggaactca gcatgtttgg gcatgtgcta atttgtgttc ctacgagagt 5160 tctggcggaa agcttattaa catcattcat ggtgcttttc aacatggatg ttaatgtagc 5220 ttatcgagga aggatacata ctggtaacgc accgatcaca ataatgactt atggttacgc 5280 attcaacttt ttggtgcaca aaccaatgga attgaaccga tatgattatg tgttgctaga 5340 tgaaattcat accaatcccg ttgaattcgc acctctattt tcttttatca aaaccacaga 5400 tccaaagaag aaaattgtta aactgtcagc aacccacgct ggaatggacc acgagtgtga 5460 aaccaggcac aagattaagg tagaaactct gagcgaaacg ccaattgaaa gttgggtttc 5520 catgcaaggc tctggggtcg ttggcgacgc aacatctgtt ggggacgtga ttttagtctt 5580 tgtcgcatct ttcaaggatg tcgacacatg tgctaatgga ctgcgatcta aaggcttcaa 5640 agttttgaaa gttgatagta gaaacttcag acgtgacgca gatgtggata aacaaattca 5700 atcactgggc gaagggaaga aattcatagt cgccacaaat atcattgaaa atggggtgac 5760 attcaacatt gatgttgttg ttgattttgg cgagaaaatc agccccaatc tctcgagcga 5820 tgagcggtgc atcacattag ggagacagag aatatcgcga gcagagannn nnnnnnnnnn 5880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5940 nnnnnnnnnn nnnnnnnnnn nnnnnnnggt aataatagtg gtcagccctc aacggttgtt 6000 gataacacgt tgatcttgat gattgccatg gaatatgcga tagccaaggt ttttgtcaca 6060 cgccctgaca tcaggtatgt ctgtaatggc gacgatctct tgattaattg tccaagggcc 6120 actgcaagcg ccattagtga acatttcaaa gatgcatttg cagatttaag cttgaactat 6180 gattttgatc atgtgtgtga caaaattaca gatgttgatt tcatgagtca tagcttcatg 6240 tggctagatg ccgagcagat gtatatacca aagttggaca aggagcggat tgtggcaatt 6300 ttggagtggg agaggagtga tgagcaattc agaacgggga gcgccctgaa tgctgcctat 6360 attgggagtt ttgggtatga agatttaatg gctgaaattg aaaaattcgc tcacttttgg 6420 gcaaaaaagc acggtcttaa tgacgtcttg atggatcgag agaaggttag agacttgtac 6480 gttaatgaag actttgatgc gtcagccttt gagaagttct atccggaaac attttcgcca 6540 tttgatgttt atgttgaacc acatgcatca acgtccaaga caatcgaaga actgcagaaa 6600 gaaatggagg atttggatgc agacacaaca attactgtgg ttcagaggga aacacagaag 6660 gcaaggataa gagaccaaat tgagacactt agggcacaac aaattgtgag acctactgag 6720 gcacagctac agcctgacgt aaatcccacg caaatagtca cgtttgaacc accgagagtc 6780 actggagttg gcgctttatg gattccgcgc caacaaagga actacatgac aacagcttac 6840 attgagaaga taaaggctta tgttccacat tcaaacttga tagaatctgg attagctagt 6900 gaagctcaat tgactagttg gatcgaaaac acgagcaggg actaccaagt tagtatggat 6960 gtcttcatga gtgcaatttt gccagcatgg attgtcaatt gcataatcaa tggaacatct 7020 caggagcgca ctaatgagca cacatggaga gctgtaatca tggcgaatat ggaagaccaa 7080 gaagtgcttt attaccccat caagcccata ataatcaatg ctcaaccaac tttgaggcag 7140 gtgatgcgtc attttggaga acaagccgtc gctcaataca tgaatagcct tcaagttgga 7200 aaacctttca cagtgaaagg tgccgtgact gctggttacg ctaacgttca agatgcttgg 7260 ctaggtatcg actttcttcg ggacacaatg cagttgacga caaaacagat ggaagttaag 7320 catcaaatta tcgcagcgaa cgttacaagg cggaaaatcc gtgttttcgc tcttgcagca 7380 ccgggggatg gcgatgaact ggacacagaa aggcacgtcg tcgacgatgt ggctaggggc 7440 cgtcatagtc tgagaggagc tcaactcgat taaatgagca cgttatcttt aatttcagct 7500 acgtgttttt atcttaatta tgtgttgtgc tttgtgtctg tttgttgtgg cacttgaacc 7560 aggtacagct ggcaggtgtt tcggcatggt gtggttagac aattggttcg caccggtggt 7620 ctaagaagcg ctatgtatca cgtggttggt taattcataa tttgtatgga tcaatcaaga 7680 agcgtctatg gcccagaagg gcaccagaaa atggttacgt cattcgtggc gtaatcaatt 7740 tttggagttt ggctaggtaa cttgtcgcct atccaaaagc c 7781 //