ID EF155970; SV 1; linear; genomic RNA; STD; VRL; 7781 BP. XX AC EF155970; XX DT 25-JAN-2010 (Rel. 103, Created) DT 19-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sweet potato mild mottle virus isolate KINT2 polyprotein gene, partial cds. XX KW . XX OS Sweet potato mild mottle virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-7781 RX DOI; 10.1099/vir.0.016089-0. RX PUBMED; 19923261. RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.; RT "Recombination and selection pressure in the ipomovirus sweet potato mild RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in RT the centre of evolution in East Africa"; RL J. Gen. Virol. 91(Pt 4):1092-1108(2010). XX RN [2] RP 1-7781 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-NOV-2006) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 1ba20634d621f5156eb95b1998dcec00. XX FH Key Location/Qualifiers FH FT source 1..7781 FT /organism="Sweet potato mild mottle virus" FT /host="Ipomoea cairica" FT /isolate="KINT2" FT /mol_type="genomic RNA" FT /country="Uganda:Mpigi" FT /isolation_source="leaf" FT /db_xref="taxon:41459" FT 5'UTR 1..139 FT CDS 140..>5867 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2SLM1" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR025910" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D2SLM1" FT /protein_id="ACQ45595.1" FT /translation="MGKSKLTYKQCIAKWGKAALEAQNNGSKRSVSVGTHQIAANIFAF FT YDAKDYHLFAMGKRGGLTLAAEQLRIAIERGTIYKVQHDCHFCPDCDAIVDSEEGWFCE FT DCGSQFNKCDDNVLENKNDAARALGGWTEYEDATWASFEAAKADMLEVAPTVGQLEKEI FT RAIEKSAGKRLTAYEEEMLEELAYKLDVVKMNEEKQEEVFEETVFSLSRDEFPALKDPQ FT GVAFNVDIEKHTEEFLIEVMKEVEKPVEFEFTLEETAEPISNAVNAHVVATPVVALSVT FT NSGTVIDKEKLVEKPKRIMCVAKQRTPAAIITTPSKSAVWIAKPRPASALSIVNPVAKP FT TVRASSDVINIGAMACPIMMSAIESHSHQYDKLTGSLDVQVEGATKEDEPVIKYNITFG FT SFNYEVSTKGEQVQAAVKLDEMIEGLDTEPILISQTGSSHKYETKKAAKGLFVQDRFSV FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGSYKNAALRLLKATKVQVFYDGIKDIFEC FT PYCHMSSNELEGLNGDNCVKCKDLFYKHIDDPRKVEEEYLMVPLVPIDQHVHEEHSIIS FT KAKWEAHESICEGEVNIFKIFDGKPTAIKKKFKTKQAPNVANVPLDDFMQELVEICLER FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFCHKNKLCLCGGIDREKKV FT RSSEVRPGWSGVILHRDQVAECDWSKFVFIDDMCVVQGRNLITNKIENALEKKGATRLK FT QIQFYANSIIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCRTC FT CFRVIKSKRIDVANALNKAKQRGERDEFIYDELIKLFELQAPPPYKIATITSDDDMLRT FT LGLSGELYSGRLSLIMQHLQGLHTSISMLHQTLAGAQNDQQIDRQALHNQVRILHQRNE FT EHMPFLKKAIDEIQLLNATDQVANARELYLDTRATSAGDFDILRKYQSIYEFFPNIMSR FT ANKAGVEVIKSETSLSKAFALMNSAKSMDAIHTLIGEDVIEHVNGACLLKNDKTFFSIG FT CKQGVDGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV FT GFVNEDEMEFYKSQMNQVVLNLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHAS FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKRVEGEILTYKVGGIYDWVTKKNAFID FT LFEHHPENVFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF FT QSVDDVCVEYAASMREIIEEHADIHGLPDSVVDRMVHAYHNEVREANKYELVDRILEKN FT IGSIAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLNAQKLFDEANERAYGKQSWNLR FT VVWGACKEVLYAATHGVFVKVKGTTVRCADAVVYGFYGRTRAIVTSWASEAWGAIFTSC FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEELGGGELYVEQHGKREEAFLFKICAIF FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPDDKVEQDLKESLKFTSFE FT IEVPKVVLSQDDMPFERWFQHQIQYAKVCADPIHSGPLRKLAFTDNSARELAMNIRTSG FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRILAESLLTSFMVLFNMDVNVAYRG FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK FT KKIVKLSATHAGMDCECETRHKIKVETLSEMPIESWVSMQGSGVVGDATSVGDVILVFV FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT FT FNIDVVVDFGEKISPNLSSDERCITLGRQRISRAE" FT mat_peptide 140..2413 FT /product="proteinase P1" FT mat_peptide 2414..3772 FT /product="helper component proteinase HC-Pro" FT mat_peptide 3773..4654 FT /product="P3 protein" FT mat_peptide 4655..4810 FT /product="6K1 protein" FT mat_peptide 4811..5866 FT /product="cytoplasmic inclusion protein CI" FT gap 5868..5967 FT /estimated_length=unknown FT CDS <5968..7473 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2SLM2" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2SLM2" FT /protein_id="ABO92959.1" FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL FT INCPRAIASAISEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLDSEQMYVPKLD FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMVEIEKFAHFWAEEHGLNDVLME FT REKIKDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSRTIEELQQEMEDLDADTTI FT TVVQRETQKARIRDQIEALRAQQIVRPSEAQLQPDVAPTQIVTFEPPRVSGVGASWIPR FT QQRNYMTTAYIEKIKAYAPHSNLIESGLASEAQLTSWFENTSRDYQVSMDVFMSAVLPA FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIVNAQPTLRQVMRHFGEQ FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMKLTTKQMKVKHQIIAAN FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD" FT mat_peptide 5968..6564 FT /product="nuclear inclusion body protein NIb" FT mat_peptide 6565..7470 FT /product="coat protein CP" FT 3'UTR 7474..7781 XX SQ Sequence 7781 BP; 2372 A; 1379 C; 1878 G; 2052 T; 100 other; taaataaaaa tgatatagag aaaatttgaa agaaaagtgt gaacttagcg aacttattcg 60 caattcagtt ttactttaaa tactttatct caattttatt gaactgtggt gtccgcttag 120 aaacagatca gacgcagaaa tggggaaatc caaactcact tacaaacaat gcattgcaaa 180 atggggaaaa gctgcacttg aagcgcaaaa caacgggtca aaaaggagtg tctctgttgg 240 aactcaccag attgcggcaa atatctttgc gttttatgat gcaaaagatt accatctatt 300 tgctatgggc aaaagaggtg gactgactct agcagctgag caattgagga tcgcaattga 360 gcgaggaaca atttacaaag ttcagcacga ctgccacttc tgtcctgatt gcgacgcaat 420 tgttgattct gaggaaggat ggttctgcga ggattgtggt tcgcaattca ataagtgcga 480 cgacaacgtg cttgaaaata agaatgacgc cgcacgcgct cttggaggat ggactgaata 540 tgaggacgcc acctgggcgt cgtttgaggc tgccaaagct gacatgcttg aagttgcacc 600 aactgtgggt caacttgaaa aagagatcag agccatagag aaatcagctg gtaaaaggct 660 caccgcttat gaagaagaaa tgcttgagga gctggcctac aaactagatg tggtcaagat 720 gaacgaggaa aagcaggaag aagtcttcga ggagactgtt ttctcactct cccgcgatga 780 gtttccggct cttaaagatc cacaaggtgt ggcattcaat gtggacattg agaagcatac 840 tgaagaattc ttgattgaag tcatgaaaga ggttgaaaag cctgtagagt ttgaatttac 900 tcttgaggaa accgctgaac caattagtaa tgctgttaac gcgcatgtgg ttgcgacacc 960 tgttgtggct ctaagtgtga caaattctgg aacagtaatc gacaaagaga agttagttga 1020 gaaaccaaag agaatcatgt gtgtcgcaaa gcaaagaact cccgctgcaa ttatcaccac 1080 gccatctaag tcggctgttt ggattgctaa gccaaggcca gcatccgcac tttccattgt 1140 taacccagtt gctaaaccaa ctgtgagagc tagcagtgat gtgatcaata taggtgctat 1200 ggcgtgtcct atcatgatgt cagcgattga atcacatagc caccaatatg acaagctcac 1260 tgggtcctta gatgtacaag ttgaaggtgc aacgaaggaa gacgaaccag tgatcaaata 1320 taatataact tttggctcat ttaattatga agtaagtact aaaggggaac aagtgcaagc 1380 tgccgttaaa cttgacgaga tgattgaagg acttgacact gaaccaattc tgataagcca 1440 aacaggaagt tcccacaaat atgaaaccaa gaaagctgca aaggggcttt ttgttcagga 1500 cagattttcc gtaattggga ataaggttct gtgcaagtcg tttcctgctt ttaagaattt 1560 catgaatgaa acaaggttgg gagggattta tagaacaaga aaaggaagtt acaaaaacgc 1620 cgcgttgcgc ttattgaagg ccacaaaagt tcaagttttc tatgatggta taaaggacat 1680 tttcgaatgt ccatattgcc acatgagcag taatgaactg gagggcctaa atggagacaa 1740 ttgtgtaaaa tgcaaggatc tattttataa acacattgat gacccaagaa aagttgagga 1800 agaatatctt atggttcctc tcgtgcccat tgaccagcac gttcatgagg aacatagcat 1860 tattagtaag gctaaatggg aagcgcacga atccatctgt gaaggagaag tgaatatttt 1920 taaaattttt gatggcaaac caactgcaat caagaagaag ttcaaaacaa aacaagcccc 1980 gaatgttgca aatgtaccac ttgatgactt tatgcaggaa ttagttgaaa tttgtcttga 2040 gagaaacacc cccattgaga ttattggggg cgtgaaatct tttaatgtag ttaagttaag 2100 acataccacg agagacatca gcaagtctgg tgaagatgat atgtatccaa ctgagaggga 2160 gtggttttgt cacaagaata aactatgttt gtgtggtgga atcgatcgtg agaagaaagt 2220 tagaagctcc gaggtgcgcc caggttggag tggagtcatt ttacacaggg atcaagtggc 2280 ggagtgtgat tggagcaagt ttgttttcat tgatgacatg tgcgtagttc aaggtagaaa 2340 cttaatcaca aacaagattg agaatgcact tgaaaagaaa ggggctacta gacttaaaca 2400 gatacaattt tatgcaaatt ctattatacc aaatttcaag gacgaattcg acagggctag 2460 tcggctcaaa gctgatcacg aaccggatga atcgtctaac aatgaactca ttggcaggct 2520 ggctaaactt gttgcagcag tcattccaaa aggccattta tactgcagaa catgctgttt 2580 tagggttatc aagagtaagc gtatagatgt agccaacgcg ctgaataagg ctaagcagcg 2640 tggtgaacgg gatgagttta tttatgatga gctcataaaa ctttttgagc tacaagcacc 2700 accaccatat aagattgcaa caatcaccag cgacgacgat atgttgcgca cattaggatt 2760 gagtggagaa ctatatagtg gacgcctgag tctcataatg caacatttgc aggggttgca 2820 cacgtcgata tcaatgcttc accaaacgct tgcaggagcc cagaatgacc aacaaattga 2880 caggcaagcg ctccacaacc aagtgcgaat tttacatcag agaaatgagg agcatatgcc 2940 cttcctgaag aaggcaattg atgaaattca gcttttaaat gcaacagatc aggttgctaa 3000 tgctcgggaa ttgtacttgg atactagggc aactagtgct ggggatttcg acatattacg 3060 gaaatatcaa agcatatatg agttctttcc caatattatg agccgagcca ataaagcagg 3120 tgtggaagtt attaaatctg aaacatcatt gagcaaagct tttgccctta tgaatagtgc 3180 taagtcaatg gacgctattc atacgctcat aggggaagac gtcatagaac acgtcaatgg 3240 tgcttgcttg ctaaagaacg ataagacatt tttctcaatt ggttgcaagc aaggtgttga 3300 tggtagcaaa atgtatggtc cgctttgtcc gaccaaacaa catgtaagaa tccaccgagt 3360 tgaatctaac atgcaaattc ctttgccaac atttcatgat gcaactgtct gggagtttaa 3420 tgaaggttat tgctatgcca atcaatttgc aataatggtt ggtttcgtca atgaggacga 3480 aatggagttt tataaaagtc aaatgaatca agttgttttg aacttagggg cttggccaac 3540 ttttgagcaa tacttaattg agctacgagc aatttcactt gattacccaa aagttagggg 3600 gtgtcctgct gctattcatt tagtttccca tgcaagcaag ctaattcatg ttttgggaca 3660 atttggaaca ataaatcaag ggtggcatgc gcttgaagta gcaactgtcg gggaacttgt 3720 agacttgtgc cataagagag ttgaaggtga gattttgact tacaaagttg gtggcattta 3780 tgactgggtg actaaaaaga acgcttttat tgatttattt gaacaccatc cagaaaatgt 3840 attcaaaatt tgtacatcgc catcagtgtt gtggttattt gctcgcagct gcgaaaagca 3900 tgattttatt aactacatca tggcaaggga ccactcattg gtgggtttgt tcattaaatt 3960 ggagtatgtt ggcaagcatc ttcatatttt tcaaagtgtc gatgatgttt gtgttgaata 4020 cgctgcgtct atgagggaaa taattgaaga gcacgctgat attcatgggt tgccggattc 4080 agtggtggat agaatggttc atgcatatca caatgaggtg agggaagcaa acaagtatga 4140 gctagtcgat agaattcttg aaaaaaacat tggatcaatt gcaaaagaaa tttcatcgcg 4200 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc agcgtttgaa 4260 gttaatgcca cattccttga atgcgcagaa actcttcgac gaggcaaacg agcgcgcgta 4320 cggaaaacaa tcatggaatt tacgcgtggt ttggggtgcg tgcaaggaag tgttatatgc 4380 agccacacac ggagtttttg taaaagtcaa aggaacaact gtgcgttgtg ccgacgccgt 4440 agtatatggc ttttatggta gaacacgagc aattgtcaca agttgggcta gtgaagcatg 4500 gggggctatt tttacgtcgt gtctgagagc attagttgtt atggttgtca cggcgtatat 4560 ttcaacctgg attccaaaaa ttaggaagat gattaaacgc gagaagaaac agtttgaaga 4620 gcttggaggt ggagagttat atgtggagca acatggcaaa agagaggaag catttttatt 4680 caagatttgc gccatctttg cacttatagc aggtatagtt gattacgaat ggggagcagc 4740 tgcatgcgca acaatgaata aagttaagag tatatgcact gttcttggat ctgtcgggat 4800 tgagagccac gccaatgagc ctgacgataa agtcgagcaa gacttgaagg aatcgcttaa 4860 attcacatct tttgagattg aagtgccaaa agtcgttcta tctcaagatg atatgccttt 4920 tgaaaggtgg ttccaacatc agatccaata tgccaaagtg tgtgcggatc ccatccatag 4980 tggtccacta cgcaagctag cttttacaga taattctgcg agagagctgg caatgaacat 5040 tcgcacatca ggggaaacag atttgcgtgt ttatagcggc gttggtggag gaaaatcaac 5100 aaggttgcct aaggaactca gcatgtttgg gcacgtatta atttgtgttc caacgagaat 5160 tctggcggaa agcttattaa catcattcat ggtgcttttc aacatggatg ttaatgtagc 5220 ttatcgagga agaatacata ctggcaacgc accgatcaca ataatgactt atggttacgc 5280 attcaacttt ttggtgcaca aaccaatgga attaaaccga tatgattatg tgttgctaga 5340 tgaaattcat accaatcccg ttgaattcgc acctctgttt tctttcatca aaaccacaga 5400 tccaaagaag aaaattgtta aactgtcagc tacccacgct ggaatggatt gcgagtgcga 5460 aaccaggcac aagattaagg tagaaactct gagcgaaatg ccaattgaaa gttgggtttc 5520 tatgcaaggc tctggggttg ttggtgacgc gacatctgtt ggggacgtaa ttttagtctt 5580 tgttgcatct ttcaaggatg tcgacacatg cgctaacgga ctgcgatcta aaggcttcaa 5640 agttttgaaa gttgatagca gaaattttag acgtgacgca gatgtggata aacaaatcca 5700 atcactgggc gaagggaaga aattcatagt tgctacaaac ataattgaaa atggggtgac 5760 attcaacatt gatgttgtcg tcgattttgg cgagaaaatc agccccaatc tatcgagcga 5820 tgagcggtgc atcacattag gaagacagag aatatcgcga gcagaaannn nnnnnnnnnn 5880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5940 nnnnnnnnnn nnnnnnnnnn nnnnnnnggg aataatagtg gtcagccctc aacagttgtc 6000 gataatacat tgatcttgat gattgctatg gagtatgcga tagctaaggt ttttgttaca 6060 cgccctgaca tcaagtatgt ctgtaatggc gatgacctct taattaattg cccaagggct 6120 attgcaagcg ccattagtga gcatttcaag gatgcattcg cagacttaag cttgaactat 6180 gattttgatc atgtttgtga taagattaca gacgttgatt ttatgagtca cagcttcatg 6240 tggttagatt ctgagcaaat gtatgtaccg aagctggaca aggagcgaat tgtagcaata 6300 ttggagtggg aaagaagtga tgagcaattc agaacaagga gcgccctgaa cgctgcttac 6360 attgaaagtt ttggatatga agatttgatg gttgagattg agaaattcgc tcacttttgg 6420 gcagaagagc atggtctcaa tgacgtcttg atggagcggg agaaaattaa agacttgtac 6480 gttaatgaag attttgacgc gtcagccttt gagaagttct atccagaaac tttttcacca 6540 tttgacgttt atgttgagcc acatgcatcg acgtccagga caatcgaaga attgcagcaa 6600 gaaatggagg atttggatgc agacacgaca atcactgtgg tccagaggga gacacagaag 6660 gcaaggataa gagatcaaat cgaggcactt agggcacaac agattgtgag accttctgag 6720 gcgcagctac agcctgacgt ggctcccacg caaattgtta cgtttgagcc accgagagtc 6780 tctggagttg gcgcttcatg gatcccacgc caacaaagaa actacatgac gactgcttac 6840 atcgagaaga ttaaggctta tgccccacat tcaaacttga tagaatctgg gctagctagt 6900 gaagctcaat tgactagttg gttcgagaac acgagtaggg attaccaagt tagtatggac 6960 gtcttcatga gtgcagtact gccagcatgg attgtcaact gcataatcaa tggaacgtct 7020 caggagcgca ctaatgagca tacatggagg gctgtaatta tggcgaatat ggaggaccaa 7080 gaagtgcttt attaccccat caagcccata attgtaaatg ctcagccaac tttgaggcaa 7140 gtgatgcgcc attttggcga acaagccgtt gctcaataca tgaacagcct tcaagttgga 7200 aaacctttca cagtgaaagg tgccgtaact gctggctacg ctaatgttca agatgcttgg 7260 ctaggtatcg actttctccg ggacacaatg aagttgacga caaaacagat gaaagttaag 7320 catcaaatca tcgcagcgaa cgtaacaagg cggaaaatcc gtgttttcgc tcttgcggcg 7380 ccgggggatg gcgatgaact ggatacagaa aggcatgttg ttgacgatgt ggctaggggt 7440 cgtcatagtc tgagaggagc tcaactcgac taaatgagca cgttatcttt aatttcagct 7500 gcgtgttttt atcttaatta tgttccgtgc tttatgtttg tgtgttgtgg cacttgaacc 7560 aggtacagct ggcaagtgtt tcggcatggt gtggttagac aattggcacg caccggtagt 7620 ctaagaagcg ctatgtatca cgtggttggt taattcatag cttgtatgga tcaatcaaga 7680 agcgtttatg gcccagaagg gcaccagaaa atggttgcgt cattcgtggc gtaatcagtt 7740 tttggagttt ggctaggtaa cttgtcgcct atccaaaagc c 7781 //