ID EF155969; SV 1; linear; genomic RNA; STD; VRL; 7784 BP. XX AC EF155969; XX DT 25-JAN-2010 (Rel. 103, Created) DT 19-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sweet potato mild mottle virus isolate 57KAP polyprotein gene, partial cds. XX KW . XX OS Sweet potato mild mottle virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-7784 RX DOI; 10.1099/vir.0.016089-0. RX PUBMED; 19923261. RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.; RT "Recombination and selection pressure in the ipomovirus sweet potato mild RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in RT the centre of evolution in East Africa"; RL J. Gen. Virol. 91(Pt 4):1092-1108(2010). XX RN [2] RP 1-7784 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-NOV-2006) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 9704a23b78ba1e1c082b42445d48eaaa. XX FH Key Location/Qualifiers FH FT source 1..7784 FT /organism="Sweet potato mild mottle virus" FT /host="Ipomoea obscura" FT /isolate="57KAP" FT /mol_type="genomic RNA" FT /country="Uganda:Kapchorwa" FT /isolation_source="leaf" FT /db_xref="taxon:41459" FT 5'UTR 1..139 FT CDS 140..>5867 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2SLL9" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR025910" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D2SLL9" FT /protein_id="ACQ45594.1" FT /translation="MGKSKLTYKQCIAKWGKAALEAQNNGSKRSVSVGTHQIAANIFAF FT YDVKDYHLFAMGKRGGLTPAAEQLSIAIERGTIYKVQHDCHFCPDCDVIIDSEEGWCCE FT DCGSQFNKRDDNILDNKNDVARALGGWTEYEDAIWASFEAAKADMLEVAPTVGQLEKEI FT RAIEKSAGKKLTAYEEEMLEELAYKLDVAKMNEEKQEKVFEETDFSISNDEFPTLEGPQ FT GEEFNESIEENNEENSIEVTREVEQFREFEITHEKIDEPIKNVAKTHVVAAPVVVLSVA FT KSGMAIIKEKLAGKPKTTMWITKSKTSAAVPATPSESAVWVAKPRPASAISTVEPIAKS FT TVKACNDVINIGAMVCPITVSAIESHSHQNEKLNESLNAQVNGATKEEEPVIKYNITFG FT SFNYEVSAKGERVQAAVQLDEMIEGPDTEPILICQTGSSHKHETKKAAKGLFVQDRFSV FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGNYKNAALRLLKATKVQVFYDGIKDVFEC FT PYCHMSSNELEGLNGDNCEKCKDLFYKHIDDPRRVEEEYLMVPLVPIDQHVHEEHSIIS FT RAKWEAHESICEGEVNIAKVFDGKPTASKKKFKTKQALNVANIPLDDFMQELVEICLER FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFCHTHKLCLCGRIDREKKI FT RSSEVRPGWSGVILHKNQVAECDWNKFVFIDDMCVVQGRNLITNKIENALEKKGSNRLK FT QIQFYANSIVPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC FT CFRVIKSKRADIVNALNKVKQRGERDEFIYDELIKLFELQAPPPYKIATITSDDDVLRT FT LGLGGELYSGRLSLIMQHLQGLHTSISMLHQSLAGAQNDQQIDRQALHNQVRILHQRNE FT EHMPFLKKAVDEIQLLNATDQVANARELYLDTRATSTGDFDILRKYQSIHEFFPNIMSR FT ANKAGVAVIKSETSLSKAFALMNSAKSMNAIHTLIGEDIIENVNGACLLKNDKTFFSIG FT CKQGVDGSKMYGPLCPTKQHVRIHRVESNMQIPMPTFHDATVWEFNEGYCYANQFAIMV FT GFVNEDEMEFYKNQMNQIVLNLGAWPTFEQYLIELRAVSLDYPKVRGCPAAIHLVSHAN FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVGGIYDWVTKKNAFID FT LFEHHPENVFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF FT QSVDDVCVEYAASMREIIEEHADIHGLRDSVVDRMVHAYHNEVREANKYELVDRILEKN FT IGLTAKEISSRKLITMYHQDLFSWHEWQRLRLMPHSLNAQKLFEEANERAYGKQSWNLR FT VIWGACKEVLYAVTRGAYVKVRGTTVRCADAVVYGFYGRTRAMVTSWASEHWGAIFTSC FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEELGGGELYVEQHGKREEAFLFKICAIF FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANESDDKVEQDLKESLKFTSFE FT IEVPNVVLSQDDMTFERWFQHQIQYAKVCADPIYSGPLRMLAITDNSARELAMNIRTSG FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK FT KKIVKLSATHAGMDRECETRHKIKVETLSETPIESWVSMQGSGVVGDATSVGDVILVFV FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT FT FNIDVVVDFGEKISPNLSSDERCIMLGRQRISRAE" FT mat_peptide 140..2413 FT /product="proteinase P1" FT mat_peptide 2414..3772 FT /product="helper component proteinase HC-Pro" FT mat_peptide 3773..4654 FT /product="P3 protein" FT mat_peptide 4655..4810 FT /product="6K1 protein" FT mat_peptide 4811..5866 FT /product="cytoplasmic inclusion protein CI" FT gap 5868..5967 FT /estimated_length=unknown FT CDS <5968..7473 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2SLM0" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2SLM0" FT /protein_id="ABO92958.1" FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL FT INCPRATASAFSEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLDAEQMYVPKLD FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMVEIEKFAHFWAEEHGLNNVLME FT REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQKELEDLDADTTI FT TVVQRETQKARIRDQIEALRAQQIVRPSEAQLQPDVTPTQIVTFEPPRVSGVGASWIPR FT QQRNYMTTAYIEKIKAYAPHPNLIESGLASEAQLTGWFENTSRDYQVSMDVFMSAILPA FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMKLTTKQMKVKHQIIAAN FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD" FT mat_peptide 5968..6564 FT /product="nuclear inclusion body protein NIb" FT mat_peptide 6565..7470 FT /product="coat protein CP" FT 3'UTR 7476..7784 XX SQ Sequence 7784 BP; 2388 A; 1365 C; 1872 G; 2059 T; 100 other; taaataaaaa tgatatagag aaaatttgaa agaaaagttt gaatctagca aacttattcg 60 caattcagtt ttactttaaa tactttatct caattttatc gaactgtggt gtccgcttag 120 aaacggatca catgcagaaa tggggaaatc caagctcact tacaaacaat gcattgctaa 180 atggggaaaa gccgcacttg aagctcaaaa caacgggtcg aaaagaagtg tctctgttgg 240 cactcatcaa attgctgcaa atatttttgc tttttacgac gtaaaagatt accatctatt 300 tgccatgggc aaaagaggtg gactgactcc agcagctgaa caattaagta ttgccatcga 360 acgaggaacg atttataagg tgcagcacga ctgtcacttc tgtcccgatt gcgacgtaat 420 cattgactct gaagagggat ggtgttgtga ggattgcggt tcgcaattca ataagcgcga 480 cgacaacata cttgataaca aaaacgatgt cgcacgtgct cttggtggct ggactgaata 540 tgaagacgcc atctgggcgt cgtttgaagc tgctaaagct gacatgctcg aagtggcgcc 600 aactgtgggt cagcttgaaa aagagatcag agccatagaa aaatcagcgg gcaaaaaact 660 caccgcttat gaagaagaaa tgcttgaaga gttggcctat aaacttgatg tggccaaaat 720 gaatgaggaa aagcaagaaa aggttttcga ggagactgat ttttctatat ccaatgacga 780 atttccgact ctcgagggac cacaaggcga agaattcaat gaatctattg aggaaaataa 840 tgaggaaaac tcgattgaag tcacgagaga ggttgaacag tttagagaat tcgagattac 900 tcatgagaaa attgatgaac caattaaaaa cgttgctaaa acgcacgtag ttgcggcacc 960 tgtcgtggtt cttagtgtgg ccaagtctgg aatggcaatt atcaaggaaa agctggctgg 1020 aaaaccaaaa acgactatgt ggattacgaa gtcgaaaact tctgctgcag ttcctgctac 1080 gccgtctgag tcggccgtct gggttgctaa gcctaggcca gcgtctgcga tttccactgt 1140 tgaaccaatt gctaaatcga cagtgaaagc ttgtaatgat gtgatcaata taggcgctat 1200 ggtgtgtcct atcacggttt cagcaattga atcacatagt catcaaaatg aaaagctcaa 1260 tgaatcccta aacgcacaag ttaatggtgc aactaaggag gaggagccag taatcaaata 1320 taatataact tttggttcat tcaattatga agtaagtgct aaaggggaac gagttcaagc 1380 tgctgtccaa cttgatgaga tgatagaagg acctgatact gaacctattc tgatttgcca 1440 aacaggaagc tcccataaac atgaaaccaa gaaggcagca aaagggcttt ttgttcagga 1500 cagattctcc gtaattggga ataaggtttt gtgcaagtca ttccccgcat tcaagaattt 1560 tatgaatgaa acaaggttgg gaggaattta cagaacaaga aaagggaatt acaagaacgc 1620 tgcattgcgt ttattgaagg ccaccaaagt tcaagtattt tacgatggga taaaggatgt 1680 ttttgagtgt ccgtattgcc acatgagcag taatgagcta gagggcctta atggagataa 1740 ttgcgaaaag tgtaaggatc tgttttataa acacattgat gatccaagaa gagttgaaga 1800 ggaatatctt atggttcctc tcgtgcctat tgatcagcat gtacatgaag aacatagcat 1860 catcagtagg gctaaatggg aggctcatga atccatctgt gaaggagaag tgaacattgc 1920 taaggttttt gatggaaagc cgactgcaag caagaagaag tttaaaacta aacaagcact 1980 gaatgttgca aatataccgc ttgacgattt tatgcaggaa cttgttgaaa tttgccttga 2040 gagaaacact cccattgaaa ttattggggg tgtgaaatct tttaatgtgg ttaagttgag 2100 gcatactacg agagatatca gcaaatctgg tgaggatgac atgtatccaa ctgaaaggga 2160 gtggttttgc cacacgcata agctatgttt gtgtggtagg attgatcgtg agaagaaaat 2220 cagaagttcc gaggtgcgtc caggttggag tggagtaatc ttacataaga atcaagtggc 2280 ggaatgcgat tggaacaagt ttgttttcat tgatgatatg tgtgtggtgc aaggtagaaa 2340 cttgatcacg aataagattg agaacgcgct tgaaaagaaa gggtctaata gacttaagca 2400 gatacaattc tatgcaaatt ctattgtacc caatttcaag gatgaatttg acagagctag 2460 ccgtctgaaa gctgatcatg aaccagatga atcgtctaac aatgaactca ttggcaggct 2520 ggctaagctt gttgcagcag tcattccaaa aggccactta tactgcaaaa catgttgttt 2580 tagggttatc aagagcaagc gcgcagatat agtcaacgca ttgaataagg ttaagcagcg 2640 tggcgaacga gatgagttta tttatgatga gctcatcaaa ctctttgagt tacaagcacc 2700 accaccgtat aagattgcaa caatcaccag tgatgatgat gtgttgcgta cattaggatt 2760 gggtggagaa ttatatagtg ggcgattgag tcttataatg caacacttac aggggctgca 2820 tacgtcaata tcaatgcttc accaatcgct tgcaggagct cagaacgacc aacaaattga 2880 taggcaagcg ctccacaacc aagtgcggat tttacatcag agaaatgagg agcatatgcc 2940 ttttctgaag aaagcagtcg atgaaattca gcttttaaat gcgacagatc aggttgccaa 3000 tgctcgggaa ttgtacttgg atactagggc aactagtact ggagatttcg acatcttaag 3060 aaaataccag agcatacacg agttctttcc caatatcatg agccgggcca ataaagcagg 3120 ggtggcagtt atcaaatctg aaacatcatt gagcaaagcc tttgccctta tgaacagtgc 3180 taagtcgatg aacgctatcc atacgctcat aggggaagac attatagaaa atgttaatgg 3240 agcttgctta ctaaagaatg acaagacatt tttttcaatt ggttgcaagc aaggtgttga 3300 tggtagtaag atgtatggcc cgctttgtcc gaccaaacag catgtaagaa tccaccgagt 3360 tgaatctaac atgcaaattc ctatgccaac attccacgat gcaaccgtct gggagtttaa 3420 cgaaggttat tgttatgcta atcaatttgc aataatggtt ggttttgtca acgaggatga 3480 aatggagttc tataagaatc aaatgaatca aattgtgttg aacttagggg cttggccgac 3540 ttttgagcaa tatttaattg agctacgagc agtctcgctt gattatccaa aagttagagg 3600 gtgtccagct gctatccatt tagtttctca tgcaaacaag ctcattcatg ttttgggaca 3660 atttggaaca ataaaccaag gttggcatgc acttgaagta gcaactgtgg gtgaacttgt 3720 agacttgtgc cataagaaag ttgaaggtga gatgttaact tataaagttg gtggcattta 3780 tgactgggtg actaaaaaga atgcttttat cgatctattt gaacaccatc cagaaaatgt 3840 attcaaaatt tgtacatcac catcagtgtt gtggttattt gctcgcagct gcgaaaagca 3900 tgattttatt aactacatta tggccagaga ccactcattg gtgggtttgt tcattaaatt 3960 ggagtatgtt ggaaaacatc tccatatttt ccaaagtgtc gacgatgttt gtgttgaata 4020 tgcggcgtct atgagggaaa tcattgaaga gcatgctgat attcatgggc tgcgggactc 4080 agtggtggat agaatggttc atgcatatca caatgaggtg agggaagcaa ataaatatga 4140 gttagtcgat agaattcttg aaaaaaacat tggattaacc gcaaaagaaa tttcatcgcg 4200 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc agcgtttgag 4260 attaatgcca cattccttga atgcgcagaa acttttcgaa gaggcaaacg agcgcgcata 4320 cgggaaacaa tcatggaatt tacgcgtgat ttggggtgcg tgcaaggaag tgttatatgc 4380 agtcacacgc ggagcttatg taaaagtcag aggaacaact gtgcgctgtg ccgacgccgt 4440 agtatatggc ttctatggta gaacacgagc gatggtgaca agctgggcta gtgaacactg 4500 gggagcaatt tttacgtcgt gtctgagagc attagttgtt atggtggtta cggcatacat 4560 atcaacttgg attcctaaga ttaggaaaat gattaaacgt gaaaagaaac agtttgaaga 4620 acttggaggt ggagagttgt atgtggagca gcatggcaaa agagaggaag cgtttttgtt 4680 taagatttgc gccatcttcg cacttatagc aggcatagtt gactacgagt ggggagcagc 4740 cgcatgcgca acaatgaaca aagtcaagag catatgcact gttcttgggt ctgttgggat 4800 tgagagccat gccaatgagt ctgatgacaa agttgagcaa gacttaaagg agtcccttaa 4860 atttacatct ttcgagattg aagtgccaaa cgtcgttcta tctcaagatg atatgacttt 4920 tgaaaggtgg ttccaacatc agatccaata tgccaaagtg tgtgcagatc ccatttatag 4980 tggtccgcta cgcatgctag ctattacaga taattctgca agagagctag caatgaacat 5040 tcgcacatca ggggaaacag atttgcgtgt ttatagtggg gttggtggag gaaaatcaac 5100 aaggttaccc aaggaactca gcatgtttgg gcatgtgcta atttgtgttc ctacgagagt 5160 tttggcagaa agcttattaa catcattcat ggtacttttc aacatggatg ttaatgtagc 5220 ttatagagga aggatacata ctggtaacgc acccatcaca ataatgactt atggttacgc 5280 attcaacttt ttggtgcaca aaccaatgga attgaaccga tatgattatg tgttactaga 5340 tgaaattcac accaatcctg ttgaatttgc acctttgttt tcttttatca aaaccacaga 5400 tccaaagaag aaaattgtta agctatcagc aacccatgct ggtatggacc gcgagtgcga 5460 aaccaggcac aagattaagg tagaaaccct gagcgaaacg ccaattgaaa gttgggtttc 5520 tatgcaaggt tctggagtcg ttggcgatgc aacatctgtt ggggacgtga ttctagtctt 5580 tgttgcatct ttcaaggatg tcgacacatg tgccaatgga ttacgatcta aaggcttcaa 5640 agttctgaaa gttgatagta gaaacttcag acgtgatgca gatgtggata aacaaattca 5700 atcactgggt gaagggaaga aattcatagt cgctacaaat ataattgaga atggagtgac 5760 attcaacatt gatgttgttg ttgattttgg cgagaaaatc agccccaatc tctcgagcga 5820 tgagcggtgt atcatgttag ggaggcagag aatatcgcga gcagaaannn nnnnnnnnnn 5880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5940 nnnnnnnnnn nnnnnnnnnn nnnnnnnggg aataatagtg gtcagccctc aacagttgtc 6000 gataacacgt tgatcttgat gattgcgatg gaatatgcga tagctaaggt ttttgtcaca 6060 cgccctgaca tcaagtacgt ctgtaatggg gacgacctct taattaattg tccaagggct 6120 actgcaagcg cctttagtga gcatttcaag gacgcattcg cagacttaag tctgaactac 6180 gacttcgatc acgtatgtga taagatcaca gatgttgatt tcatgagtca tagcttcatg 6240 tggttagatg ctgagcaaat gtatgtaccg aagctggata aggagcggat cgtagcaatc 6300 ttggagtggg aaagaagtga tgagcagttc agaacaagga gcgccttgaa tgctgcctac 6360 attgagagct ttgggtatga agatttgatg gttgagattg agaaattcgc tcatttttgg 6420 gctgaagagc acggtcttaa taacgtcttg atggagcggg aaaaggttag agatttgtac 6480 gtcaatgaag attttgacgc gtcagctttt gaaaagttct atccagagac attctcacca 6540 tttgacgttt atgttgagcc gcatgcatca acgtccaaga caatcgagga attgcagaaa 6600 gaattggaag atttggatgc agacacgaca atcactgtgg tccaaaggga aacacaaaag 6660 gcgagaataa gagatcaaat cgaggcactt agggcacaac agattgtgag accttctgag 6720 gcgcagcttc agcctgacgt aactcccact caaattgtta cgtttgagcc accaagagtc 6780 tccggagttg gtgcttcatg gatcccacgc caacaaagaa actacatgac gactgcttac 6840 atcgagaaga ttaaggctta tgccccacac ccaaacttga ttgaatctgg gctagctagt 6900 gaagctcaat taaccggttg gttcgagaac acaagcaggg attaccaagt tagtatggac 6960 gttttcatga gtgcaatact gccagcatgg attgttaact gcataatcaa tggaacatct 7020 caggagcgaa ctaatgagca tacatggagg gctgtaatta tggcaaatat ggaggaccaa 7080 gaggtgcttt attaccccat caagcccata ataatcaatg ctcaaccaac tttaaggcaa 7140 gtgatgcgtc attttggcga acaagccgtc gctcaataca tgaacagcct tcaagttgga 7200 aagcctttta cagtgaaagg cgccgtaact gctggctacg ctaatgttca agatgcttgg 7260 ctaggtatcg actttctccg ggacacaatg aagttgacaa caaaacagat gaaagtcaag 7320 catcaaatca ttgcagcgaa cgtaacaagg cgaaaaatcc gtgttttcgc tcttgcggcg 7380 ccgggggatg gcgatgaact ggacacagaa aggcatgttg ttgacgatgt ggctaggggt 7440 cgtcatagtc tgagaggagc tcaactcgac taaatgagca tgttatcttt aatttcaact 7500 acgtgttttt cttatttcaa ttatgttccg tgctttatgt ttgtgtgttg tggcacttga 7560 accaggtaca gctggcaggt gtttcggcat ggtgtggtta gacaattggc acgcgccggt 7620 agtctaagaa gcgctatgta tcacgtggtt ggttaattca tagtttgtat ggattaatca 7680 agaagcgttt atggcccaaa agggcaccag aaaatggttg cgtcattcgt ggcgtaatca 7740 gtttttggag tttggctagg taacttgtcg cctatccaaa agcc 7784 //