ID EF153734; SV 2; linear; genomic RNA; STD; VRL; 2220 BP. XX AC EF153734; XX DT 10-JAN-2007 (Rel. 90, Created) DT 23-OCT-2012 (Rel. 114, Last updated, Version 3) XX DE Cucumber mosaic virus isolate Lucknow segment RNA3, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-2220 RA Pratap D., Kumar S., Raj S.K.; RT "First molecular identification of a Cucumber mosaic virus isolate causing RT shoestring symptoms on tomato in India"; RL Australas. Plant Dis. Notes 3(1):57-58(2008). XX RN [2] RP 1-2220 RA Pratap D., Raj S.K., Kumar S.; RT ; RL Submitted (30-NOV-2006) to the INSDC. RL Molecular Virology, National Botanical Research Institute, Rana Pratap RL Marg, Lucknow, U.P. 226 001, India XX RN [3] RC Sequence update by submitter RP 1-2220 RA Pratap D., Raj S.K., Kumar S.; RT ; RL Submitted (27-SEP-2007) to the INSDC. RL Molecular Virology, National Botanical Research Institute, Rana Pratap RL Marg, Lucknow, U.P. 226 001, India XX DR MD5; 8e138c1a3c2a80dce71c06409cf0b763. DR EuropePMC; PMC3550734; 23637513. DR EuropePMC; PMC3550809; 23730005. DR EuropePMC; PMC4188193; 25674612. DR RFAM; RF01084; TLS-PK3. XX CC On Sep 27, 2007 this sequence version replaced gi:120971607. XX FH Key Location/Qualifiers FH FT source 1..2220 FT /organism="Cucumber mosaic virus" FT /segment="RNA3" FT /host="Lycopersicon esculentum" FT /lab_host="Nicotiana glutinosa" FT /strain="CMV-Ts" FT /isolate="Lucknow" FT /mol_type="genomic RNA" FT /country="India:Lucknow, Gomti river bank" FT /note="causes shoestring subgroup: IB" FT /db_xref="taxon:12305" FT CDS 122..973 FT /codon_start=1 FT /product="movement protein" FT /note="3a; MP" FT /db_xref="GOA:Q9IR75" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q9IR75" FT /protein_id="ABM46607.2" FT /translation="MAFQGTSRTLTQQSSAATSDELQKILFSPEAIKKMATECDLGRHH FT WMRADNAISVRPLVPEVTHGRIASFFKSGYDAGELSSKGYMSVPQVLCAVTRTVSTDAE FT GSLRIYLADLGDKELSPIDGQCVTLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE FT RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK FT SQLNNIESSQYVLTNAKINQNARSESEELNVESPPIAIGSSSASRSETFRPQVVNGTLL FT FS" FT CDS 1261..1917 FT /codon_start=1 FT /product="coat protein" FT /note="3b; CP; encapsidation of virus" FT /db_xref="GOA:Q9YJR9" FT /db_xref="InterPro:IPR000247" FT /db_xref="InterPro:IPR023800" FT /db_xref="InterPro:IPR037137" FT /db_xref="UniProtKB/TrEMBL:Q9YJR9" FT /protein_id="ABM46608.2" FT /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT FT LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV FT SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN FT NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV" XX SQ Sequence 2220 BP; 515 A; 525 C; 532 G; 648 T; 0 other; gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtgtcg cgtcgtgtcg agtcgtgttg 60 tccgcacatt tgagtcgtgc tgtccgcaca ttttcttttc agtgtgttag attcccgagg 120 tatggctttc caaggtacca gtaggacttt aactcaacag tcctcagcgg ctacgtctga 180 cgaacttcaa aagatattat ttagccctga agccattaag aagatggcta ctgagtgtga 240 cctaggccgg catcattgga tgcgcgctga taatgctatt tcagtccggc ccctcgttcc 300 cgaagtaacc catggtcgta ttgcttcttt ctttaagtct ggatatgatg ctggtgaatt 360 aagctctaaa ggatatatga gcgttcctca agtgttgtgt gctgttactc gaacagtttc 420 caccgacgct gaaggatctt tgagaattta cctagctgat ttaggcgaca aggagttatc 480 tcctatagac ggacagtgcg tcacattaca taaccatgat ctacccgctt tagtgtcttt 540 ccaaccgacg tatgattgtc ctatggaaac tgttgggaat cgtaagcggt gttttgctgt 600 tgttatcgaa agacatggtt atattgggta taccggcacc acagctagcg tgtgtagtaa 660 ttggcaagca cggttttctt ctaagaataa caactacact cacatcgcag ctgggaagac 720 tctagtactg ccattcaaca gattagctga gcaaacgaaa ccgtcagccg tcgctcgcct 780 gttgaagtcg caactgaaca acatagaatc ttcgcaatac gttttaacga atgcgaagat 840 caatcagaat gcgcgcagtg agtccgagga attaaatgtt gagagccctc ccatcgcaat 900 cgggagttct tccgcgtccc gctccgaaac cttcagaccg caggtggtta acggtacttt 960 actgttttcg tagcgtttta gtatataagt atatgtgagt ctgtacataa tactatatct 1020 atagtgtcct gtgtgagttg atacagtaga catctgtgac gcgatgttgt gttgagaaga 1080 gagcacatct ggttttagta aacccacaac atatctttga ggttcaattc ctctcgttcc 1140 ctgttgggcc cctttacttt ttcatggaag cttctccacg agactgcgtt tcgtctactt 1200 atcctaagag tattgtgttg tgttttctct ttgtgtagta gaattaagtc gagtcgagtc 1260 atggacaaat ctgaatcaac cagtgccggt cgtaatcgtc gacgtcgtcc gcgtcgtggt 1320 tcccgctccg ctccctcctc cgcggatgct aactttagag tcttgtcgca gcagctttcg 1380 cgacttaaca agacgttagc agctggtcgt ccaactatta accacccaac ctttgtgggt 1440 agtgaacgct gtaaacctgg gtacacgttc acatctatta ccctgaagcc gccgaaaata 1500 gaccgcgggt cttattatgg taaaaggttg ttgctacctg attcagtcac ggagttcgat 1560 aagaagcttg tttcgcgcat tcaaattcga gttaatcctt tgccgaaatt tgattctacc 1620 gtgtgggtga cagtccgtaa agttcctgcc tcctcggact tatccgttgc cgctatctct 1680 gctatgtttg cggacggagc ctcaccggta ctggtttatc agtatgctgc atccggcgtt 1740 caagccaaca acaaattgtt gtacgatctt tcggcgatgc gcgctgatat tggcgacatg 1800 agaaagtacg ccgtcctcgt gtattcaaaa gacgatgcgc tcgagacgga cgagttggta 1860 cttcatgttg acatcgagca ccaacgcatt cccacatctg gagtgctccc agtttgaatc 1920 cgtggttttc ccagaatcct ccctccggtc ctgtggcggg agctgagttg gtagtgttgc 1980 tataaactac ctgaagtcac taaacgcttt gcggtgaacg ggttgtccat ccagcttacg 2040 gctaaaatgg tcagtcgtgg agaaatccac gccagtagac ttacaagtct ctgaggtgcc 2100 tttgaaacca tctcctaggt ttcttcggaa ggacttcggt ccgtgtacta ctagcacaag 2160 atgctagttt tagggtacgg gcatcccccc ccttcagtgg gggtctctta aaggagacca 2220 //