ID EF153268; SV 1; linear; genomic RNA; STD; VRL; 3642 BP. XX AC EF153268; XX DT 11-MAR-2007 (Rel. 91, Created) DT 16-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Beet black scorch virus isolate CO, complete genome. XX KW . XX OS Beet black scorch virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betanecrovirus. XX RN [1] RP 1-3642 RX DOI; 10.1094/PHYTO-97-10-1245. RX PUBMED; 18943682. RA Weiland J.J., Van Winkle D., Edwards M.C., Larson R.L., Shelver W.L., RA Freeman T.P., Liu H.Y.; RT "Characterization of a U.S. Isolate of Beet black scorch virus"; RL Phytopathology 97(10):1245-1254(2007). XX RN [2] RP 1-3642 RA Weiland J., Van Winkle D., Edwards M., Larson R., Shelver W., Freeman T., RA Liu H.-Y.; RT ; RL Submitted (30-NOV-2006) to the INSDC. RL Sugarbeet Research, USDA-ARS, Northern Crop Science Laboratory, 1307 18th RL St. N, Fargo, ND 58105, USA XX DR MD5; 382556932752e6ecefe4f4b344f34e16. XX FH Key Location/Qualifiers FH FT source 1..3642 FT /organism="Beet black scorch virus" FT /isolate="CO" FT /mol_type="genomic RNA" FT /country="USA:Colorado" FT /db_xref="taxon:196375" FT CDS 34..2208 FT /codon_start=1 FT /transl_except=(pos:643..645,aa:OTHER) FT /product="RNA-dependent RNA polymerase" FT /note="p82; ORF2; produced by suppression of translation FT stop codon terminating ORF1" FT /db_xref="GOA:A3R4U6" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:A3R4U6" FT /protein_id="ABO18577.1" FT /translation="MDSIPYVILRILDFVFRSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFNDMVTRFQQESMFSPNDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVIHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCEGMEERRAVLGPSYGKXGGLLCTSGFTTPTWRGNP FT EGLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPT FT PKPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGV FT QDAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAIDRVYGG FT RTVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYHGA FT DRKILSKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCASVHNYCSR FT LGVMRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQT FT RPVLVNGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSF FT FMQFPLSSGPKTKSDMSIALQEDWKYKFNRTGCFKNLTPTPQSRYSFWRAFGVLPDEQI FT ALENGFSRLSFDKLDQDVQEEVSLLQFSGA" FT CDS 34..645 FT /codon_start=1 FT /product="p23" FT /note="ORF1" FT /db_xref="GOA:A3R4U7" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:A3R4U7" FT /protein_id="ABO18576.1" FT /translation="MDSIPYVILRILDFVFRSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFNDMVTRFQQESMFSPNDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVIHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCEGMEERRAVLGPSYGK" FT CDS 2126..2242 FT /codon_start=1 FT /product="p4" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:A3R4U8" FT /protein_id="ABO18578.1" FT /translation="MDFLVLALTSWTRMSRRRLASSSSLGHENLTTFHGTTA" FT CDS 2226..2417 FT /codon_start=1 FT /product="p7a" FT /note="ORF4" FT /db_xref="InterPro:IPR035284" FT /db_xref="UniProtKB/TrEMBL:A3R4U9" FT /protein_id="ABO18579.1" FT /translation="MEQQRSEQRRERRVRSKSEDRKSMSDVGQSAVNREADIKKDMGPS FT VSMTVVGENVEFTQHFHF" FT CDS 2419..2616 FT /codon_start=1 FT /product="p7b" FT /note="ORF5" FT /db_xref="GOA:A3R4V0" FT /db_xref="UniProtKB/TrEMBL:A3R4V0" FT /protein_id="ABO18580.1" FT /translation="MSTIYVVQEESSGFLVWALVVAIVCIIGLLSYTPPERLNHSYHEN FT NQKTQYITIGGASTSKVSTN" FT CDS 2432..2575 FT /codon_start=1 FT /product="p5b" FT /note="ORF6" FT /db_xref="UniProtKB/TrEMBL:A3R4V1" FT /protein_id="ABO18581.1" FT /translation="MLCRRSPLGSSCGHWLLQLCASLDSYHTPHLKDLTTLITKTIRRR FT NT" FT CDS 2645..3343 FT /codon_start=1 FT /product="p25" FT /note="capsid protein; ORF7" FT /db_xref="GOA:A3R4V2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A3R4V2" FT /protein_id="ABO18582.1" FT /translation="MAPKRNKGSKKTRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT FT RVTNTELLAGINVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLAIKLIYVPIVPT FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGERPTTGAVCI FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIKYSIE FT LIEPIPAAIN" FT CDS 2691..2975 FT /codon_start=1 FT /product="p10" FT /note="ORF8" FT /db_xref="GOA:A3R4V3" FT /db_xref="UniProtKB/TrEMBL:A3R4V3" FT /protein_id="ABO18583.1" FT /translation="MRQCGLLLLVASYNVHLAFLLVLGPPLLVRVSPTLSCSQELMLLP FT QGPSQSLVLVCSPATLAGLMGLLLTIANLDGLLSSSSMFPSSLLRLLGQ" XX SQ Sequence 3642 BP; 888 A; 850 C; 952 G; 952 T; 0 other; gaaacctaac cagtttctcg ttgatcagcg atcatggatt caatcccgta tgtgatcctg 60 cgcatactcg attttgtctt ccgctccatc ttctttccat ccctactctt catcatcaat 120 cacaacacca ctatcctatg ggcatgtgct tgtgcctatg ggttttaccg tgcatttcgc 180 cttatcttca agataaaggt ggaggtacac ccagccaccc gagccgtctt caacgacatg 240 gtcacccgtt tccagcagga gagtatgttc tcacctaatg acgaagtgcc ggagggtatc 300 ccgatacacg aggatgttga ccttgttagc gaccccacac acaaagatat taagcgggtc 360 cgtgctagca ggcgagtctc atatgccgtg agggttgccc atgtagccaa gtcgaaggtg 420 ggactactcg ccaataccaa ggcgaatgag ctggtttact cccgcctatg cagagatgag 480 atggttatcc acggtgtacg cccatcgcac attgcacacg cagtgccgct agctgtcgcg 540 gcctgcttca taccactaga cagtgatttc ctcgcagcct ctatcaggaa ttgcgagggg 600 atggaggagc ggagggccgt gttggggccc tcatatggaa aatagggagg cctactctgc 660 accagcgggt ttaccacgcc aacttggcgt ggtaatccag agggtttgct ggtgaagaga 720 ggaccacctc tggctaaacc taggaaactg taccgttttt ctgggtttgg gactcatata 780 cggtacggag tgcacgacca ctcattgggc aatgttcgga ggggacttgt tgagcggcta 840 ttcatggtgg aaaccaagga tggcttagct ccaacaccaa agcccacccc tggcgtgtac 900 gccaagttat cccggtttca cgacctagtt agtgccaatc taacctcgac caccagatta 960 acatacgagc aatttctcgg attttattct ggtcgcaaat tggagaggta ccaacaggct 1020 gtggagtcgt tagcaatccg cccaataggg gtacaggatg cttggcttag cacgtttgtt 1080 aaggctgaaa aattaaacat ctcagctaaa cccgatccgg cacctagggt cattcagcct 1140 aggtcgccga ggtataatgt ggaggttgga cggttcctca gacatgctga ggaacatttg 1200 ttcgacgcca ttgaccgtgt gtatggtggg cggacggtgt tcaaggggtt gaatgccgat 1260 caggctggca tggagatgca agccatgtgg caagagttcg acaatcctgt aggcatcggt 1320 atggatgcgt ctcgtttcga ccaacacgtc tctaaggagg cgttggagtt cgaacacaag 1380 atttggctgt ccatgtatca tggggctgac aggaaaatct tatcgaagct gttggggatg 1440 caaatccaca accgcggtct tgctagatgc cctgatgggg aaatcaggta cacggtagag 1500 gggtgtcgta tgtctggaga tattaacaca tcttccggaa actgctatat tatgtgtgct 1560 tcagtgcaca actattgcag ccggttgggt gttatgagat ttagacttgc caacaatggt 1620 gatgattgca tgcttgtggt cgaagccaag gatgaggcac gtgtgaggca ggggctcatc 1680 gagtattaca gggagttagg tttcacaatg aaagtggagc ccactgtcta tgaactcgag 1740 cacttggagt tttgccaaac gcgcccagtc cttgttaatg gggcttatcg tatggtgcgc 1800 aatcttcatc aaggtatgtc taaggatcta cactccttgc atgatcttgg tagtaggaaa 1860 gctgctgaag cttgggtttc agcagttggc agcggaggcc gcgtaatgaa tgatggggta 1920 ccagtgctca aatcattctt tatgcagttt cctctgtcct ctggtcctaa aaccaagtcc 1980 gatatgagta tagcgttgca ggaagattgg aaatacaaat tcaatcggac tgggtgtttc 2040 aagaatttga cacccactcc acaatcccgc tactcatttt ggcgtgcgtt cggagtgttg 2100 ccagatgaac agattgctct agagaatgga ttttctcgtc ttagctttga caagctggac 2160 caggatgtcc aggaggaggt tagcctcctc cagttctctg gggcatgaaa acctaaccac 2220 ttttcatgga acaacagcgt agcgaacaac gtcgtgagcg tagagtgaga agcaaatcgg 2280 aggacaggaa gtctatgtct gatgttgggc aatctgctgt caacagggaa gcagatatca 2340 agaaagacat gggtccatcg gtttctatga cggtggtggg ggagaatgtg gagtttacac 2400 aacatttcca cttctgaaat gagcaccatt tatgttgtgc aggaggagtc ctctgggttc 2460 ctcgtgtggg cattggttgt tgcaattgtg tgcatcattg gactcttatc atacacccca 2520 cctgaaagac ttaaccactc ttatcacgaa aacaatcaga agacgcaata cataactatt 2580 ggaggagcat ccactagtaa agtttccacg aactgaattt actgctttct agtatagtta 2640 ataaatggca cctaaacgta ataaaggaag caagaagacc cgcatgtccg atgagacagt 2700 gcgggctcct gctgctggtg gcgtcataca acgtacacct ggcattcctc ctcgtattag 2760 gtccaccact attggtacgc gtgtcaccaa cactgagctg ctcgcaggaa ttaatgttgc 2820 tgccgcaggg gccttctcag tcgttggtgc tggtctgttc cccagcaacc ttggctggct 2880 taatgggatt gcttctaact atagcaaatt tagatggctt gctatcaagc tcatctatgt 2940 tcccatcgtc cctactacga ctgctggggc aatgaccatg gctttatctt atgatcccgc 3000 tgatgctaca ccaactagtt ttcaacaggt gcaacagatg tataacagca tcacagcgcc 3060 tgtctgggct ggttttgatg gagctactgt tcagcttctt ggggagcgtc cgacaactgg 3120 ggctgtgtgc attgacgtgg atgtgaatcg gtttggattc acatggtaca gatatgccac 3180 gcttgctgcc attaccgcac tcactgcaaa tgataggaat ctttacattc ccagtgtttg 3240 caatgtggct acttctggcg gctccgcagc taccaatgtt ggtaatttga tgataaagta 3300 tagtattgag ctcattgagc caatacccgc tgccatcaat tagatcccac atcctggtgt 3360 ggttaatcca gtgaaaaata ttaggaaatc cttgggattc acgccccgag ggggattgct 3420 tgcatagtgc aggtatgttg agtcacactg tgaggtattg gtgctgaatc ctggtaaaca 3480 ggcttgacag gtttgggtgg ttccaaaccg atgtattacc caagatactc atggtactcc 3540 actagaaaac actatgcgtg cgcacacggc tggctatgtc ctatcatagc tgggggcccc 3600 ggagtgcgaa accctcttat atacctggtc ttccaggtgc cc 3642 //