ID EF141327; SV 1; linear; genomic RNA; STD; VRL; 8970 BP. XX AC EF141327; XX DT 14-JAN-2007 (Rel. 90, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Rice stripe virus isolate JY segment 1, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-8970 RA Dong Z.; RT ; RL Submitted (27-NOV-2006) to the INSDC. RL College of Life Science, Capital Normal University, Xisanhuan Beilu No. RL 105, Haidian District, Beijing, Beijing 100037, China XX DR MD5; ed10826fa9add479f88c7ac269f4dc2b. XX CC GenBank Accession Numbers EF141327-EF141330 represent the complete CC genome of Rice stripe virus isolate JY. XX FH Key Location/Qualifiers FH FT source 1..8970 FT /organism="Tenuivirus oryzaclavatae" FT /segment="1" FT /isolate="JY" FT /mol_type="genomic RNA" FT /isolation_source="infected rice leaves" FT /db_xref="taxon:3052763" FT CDS 58..8817 FT /codon_start=1 FT /product="RNA polymerase" FT /note="disease-specific protein" FT /db_xref="GOA:A2I7L4" FT /db_xref="InterPro:IPR003323" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR015842" FT /db_xref="InterPro:IPR022531" FT /db_xref="InterPro:IPR029124" FT /db_xref="UniProtKB/TrEMBL:A2I7L4" FT /protein_id="ABM65843.1" FT /translation="MTTPPLVIPLHVHGRSYELLAGYHEVDWQEIEELEETDVRGDGFC FT LYHSILYSMGLSKENSRTTEFMIKLRSNPAICQLDQEMQLSLMKQLDPNDSSAWGEDIA FT IGFIAIILRIKIIAYQTVDGKLFKTIYGAEFESTIRTRNYGNYHFKSLETDFDHEVKLR FT SKIEEFLRMPVEDCESISLWHASVYKPIVSDSLSGHKSFSNVDELIGSIISSMYKIMDN FT GDQCFLWSAMRMIARPSEKLYALAVFLGFNLKFYHVRKRAEKLTAKLESDHTNLGVKLI FT EVYEVSEPTRSTWVLKPGGSRITETRNFVIEEIIDNRRSLESLFVSSPEYPAELCSQKL FT SAIKDRIALMFGFINRTPENSGRELYINTYYLKRILQVERNVIRDSLRSQPAVGMIQII FT RLPTAFGTYNPEVGTLLLAQTGLIYRLGTTTRVQMEVRRSPSVISRSHKITSFPETQKH FT NNNLYDYAPRTQETFYHPNAEIYEAVDVKTPSVITEIVDNHIVIKLNTDDKGWSVSDSI FT KQDFVYRKRLMDAKNIVHDFVFDILSTETDKSFKGADLSIGGISDNWSPDVIISRESDP FT QYEDIVVYEFTTRSTESIESLLRSVEVKSLRYKEAIQERAITLKKRISYYTICVSLDAV FT ATNLLSLPADVCRELIIRLRVANQVKIQLADNDINPDSATLLAPDIYRIKEMFRESFPN FT NKFIHPITKEMYEHFVNPMISGEKDYVANLKSIIDKETRDEQRKNLESLKVVDGKKYTE FT RKAETALNEMSQAEEHYRSYFENDNFRSTLKAPVQLPLIIPDVSSQDNQFSNKELSDRI FT RKKPIDHPIYNIWDQAVNKRNCSIALGHLDELEISMLEGQVAKKVEESYKKDRSQYNRT FT TLLTNMKEDIYLAERGINAKKRLEEPDVKFYRDQSKRPFHPFVSETRDIEQFTQKECLE FT LNEESGHCSLINVEDLVLSALELHEVGDLEHLWNSIKAHSKTKFALYAKFISDLATELA FT ISLSQNCKEDTYVVKKLRDFSCYVLIKPVNLKSNVFFSLYIPSNIYKSHNTTFKTLIGS FT PESGYMTDFVSANVSKLVNWVRCEAMMLAQRGFWRESYAVAPSIEEQDGMAEPESVCQM FT MSWTLLILLNDKHQLEEMITVSRFVHMEGFVTFPAWPKPYKMFDKLSVTPRSRLECLVI FT KRLIMLMKHYSENPIKFMIEDEKKKWFGFKNMFLLDCNGRLADLSDQDQMLNLFYLGYL FT KNKDEEVEDNGMGQLLTKILGFESAMPKTRDYLGMKDPEYGTIEKHEFSISYVKDLCDK FT FLDRLKKTHGIKDPITYLGDKIAKFLSTQFIETMASLKASSNFSEDYYLYTPSRRLKNQ FT EQSRSKHVIDPGGNISASVKGKLYHRSKVIEKLTTLIKDETPGKELKIVVDLLPKAMEV FT LNKNECMHICIFKKNQHGGLREIYVLNIFERIMQKTVEDFSRAILECCPSETMTSPKNK FT FRIPELHNMEARKTLKNEYMTISTSDDASKWNQGHYVSKFMCMLLRLTPTYYHGFLVQA FT LQLWHHKKIFLGDQLLQLFNQNAMLNTMDTTLMKVFQAYKGEIQVPWMKAGRSYIETET FT GMMQGILHYTSSLFHAIFLDQLAEECRRDINRAIKTINNKENEKVSCIVNNMESSDDSS FT FIISIPNFKENEAAQLYLLCVVNSWFRKKGKLGTYLGIYKSPKSTTQTLFVMEFNSEFF FT FSGDVHRPTFMWVNAAVLIGEQETLSGIQEELSNTLKDVIKGGGTYALTFIVQVAQAMI FT HYKMLGSSASSVWPAYETLLKNSYDPALGFFLMDNPKCAGLLGFNYNVWIACTTTPLGE FT KYHEMIQEEMKAESQSLKSVTEDTINTGLVSRTTMVGFGNKKRWMKLMTTLNLSADVYE FT KIEEEPRVYFFHAATAEQIIQKIAIKMKSPGVIQSLSKGNMLARKIASSVFFISRHIVF FT TMSAYYDAHPDTRKNSLLKELINSSKIPQRHDYLQEPHTLKPTKVEVDEDRWEFKSAKE FT ECIRVLKQRIKIHTGREERSISLLFENMAKSMIGRCTDQYDVRENVSILACALKMNYSI FT FKKDAAPNRYLLDEKNLVYPLIGKEVSVYVKSDKVHIEISEKKERLSTKLFNIDKMKDI FT EETLSLLFPSYGDYLSLKETIDQVTFQSAIHKVNERRRVRADVHLTGTEGFSKLPMYTA FT AVWAWFDVKTIPAHDSIYRTIWKVHKEQYSWLSDTLKETVEKGPFKTVQGVVNFISRAG FT VRSRVVHLVGSFGKNVRGSINLVTAIKDNFSNGLVFKGNIFDIKAKKTRESLDNYLSIC FT TTLSQAPITKHDKNQILRSLFVSGPRIQYVSSQFGSRRNRMSILQEVVADDPTLHWPDQ FT DTSQKQLEDKFRELAHKELPFLTEEVFHDHLEKIEQLMKENTHLGGRDVDASKTPYVLA FT RANDIEIHCYELWREYDEDEDEAYQAYCSEVEAAMDQEKLNALIERYHVDPKANWIQML FT MNGEIETVEELNKLDKGFESHRLALVERIRVGKLGILGSYTKCQQRIEELDGEGNKTHR FT YTGEGIWRGSFDDSDVCIVVQDLKKTRESYLKCVVFSKVSDYKVLMGHLKTWCREHHIS FT NDEFPTCTQKELLSYGVTKSSVLLYKMNGMKMLRNMEKGIPLYWNPSLSTRSQTYINWL FT AVDITDHSLRLRNRTVENGRVVNQTIMVVPLYKTDVQIFKTSPVDLEQDVQNDRLKLLS FT VTKAGELRWLQDWIMWRSSAVDDSNILNQVRRNKAARDHFNAKPEFKKWIKELWDYALD FT TTLINKKVFITTQGSESQSTVSSGDSDSAVAPLTDEAVDEIHDLLDKELEKGTLKQIIH FT DATIDAQLDIPAIESFLAEEMEVFKSSLAKSHPLLLNYVRYMIQEIGVTNFRSLIDSFN FT QKDPLKSVSLSIIDLKEVFKFVYQDINDAYFVKQEEDHKFDF" XX SQ Sequence 8970 BP; 3075 A; 1532 C; 1971 G; 2392 T; 0 other; acacatagtc agaggaaaaa ataattttga ttttgttttc cacaaaagaa ttgaaggatg 60 acgacaccac ctctcgttat acccttgcat gttcatggca ggtcttatga actgttggcg 120 gggtatcatg aagttgattg gcaggagata gaagagttgg aagaaactga tgtcagaggt 180 gatggatttt gtctttacca ttccatacta tatagtatgg gcctgagcaa ggagaactct 240 cgcaccactg agtttatgat aaagctacga tcaaatcctg ctatctgtca gctggatcaa 300 gaaatgcaac tgagccttat gaagcagctt gatccaaatg actcatcagc ctggggtgaa 360 gatatagcaa ttgggtttat agctataata ttgagaatta agataattgc ttaccagaca 420 gttgatggga agttgtttaa gactatttat ggtgctgagt ttgagagtac cattagaact 480 aggaattatg ggaattacca cttcaagtca cttgagacag attttgacca tgaagtaaag 540 ctcagatcaa aaattgaaga attcttgaga atgccagtgg aagactgtga atccatatcc 600 ttgtggcatg catctgttta caagcctata gtatctgata gcctttctgg acacaagagc 660 tttagtaatg tggatgaatt gataggtagc ataatatcca gcatgtataa gatcatggac 720 aatggtgatc aatgttttct ttggagtgca atgagaatga tagccagacc ctctgaaaaa 780 ctatatgccc ttgcagtgtt tttgggattc aatcttaagt tctatcatgt gaggaaaaga 840 gctgagaaat tgacggcaaa acttgagagt gatcatacta atttgggagt gaagctgatt 900 gaggtgtatg aagtttctga gccaaccaga tctacctggg tcctgaaacc aggagggagc 960 agaataactg aaacaagaaa ttttgtgatt gaggagataa tagataacag gcgctctctg 1020 gagagcttgt ttgtgtcaag ccctgagtat cctgcagagt tatgttccca gaaacttagt 1080 gccatcaaag acagaatagc actaatgttt ggctttatca acagaacccc tgaaaacagt 1140 gggagagaac tctacataaa cacatactat ctgaagagaa tcttacaggt ggaaagaaat 1200 gtaattagag attctttgag atcacagcct gctgtgggga tgatccagat aatcagatta 1260 ccaacagcat ttggtacata caacccggag gtgggcactc tgttgttggc ccaaactgga 1320 ctaatctata gacttggcac cacaactaga gtgcagatgg aggtcaggag atccccctct 1380 gttatttcaa gatctcataa gatcactagt ttcccggaaa cacaaaaaca caacaacaat 1440 ttgtatgatt atgcacccag aacacaggag acattttatc acccaaatgc tgagatctat 1500 gaggctgttg atgtaaagac tcctagtgtt atcacagaga ttgttgataa tcatatagtg 1560 ataaaattga acactgatga taagggttgg tcagtcagtg attcgataaa gcaagatttt 1620 gtatatcgga agagactaat ggatgcaaag aatattgttc atgactttgt ttttgatatc 1680 ttatcaactg agactgacaa gagctttaag ggtgctgact tatctatagg aggaatctca 1740 gataactggt caccagatgt cattatatca agagaaagtg atccacagta tgaagacatc 1800 gttgtctatg agtttacaac aaggtctact gagtctatag aatctctcct aagatcagtg 1860 gaggttaaaa gcttacgata taaagaagca attcaggaaa gagctatcac attaaagaag 1920 aggatatctt attacactat atgtgtcagt ctagatgctg tagccacaaa tctgctatca 1980 cttcctgctg atgtttgtag agaactaata atacgattaa gagttgctaa tcaggtaaag 2040 atccagctag ctgataacga catcaatcca gactctgcca ctttgctagc acctgacatt 2100 tacagaataa aggaaatgtt tagggaaagt ttcccaaata ataaatttat acatcctatc 2160 accaaggaaa tgtatgagca ttttgtcaat ccaatgatct caggagaaaa agactatgtt 2220 gccaatttga agagcataat agacaaagag accagagatg agcagagaaa gaacttagag 2280 agtctgaaag ttgtggatgg gaaaaagtac acagagagaa aagcagaaac tgctttgaat 2340 gagatgtcac aagcagaaga gcattataga agctattttg aaaatgacaa ttttaggtcc 2400 acactaaaag ctccagtcca acttccctta atcataccag atgtgtcaag tcaggacaat 2460 caattctcaa acaaggaact atctgatagg atacggaaga agccgatcga ccaccctatt 2520 tacaacatct gggaccaagc agttaataag agaaattgct cgattgcact cggccatttg 2580 gatgagctag aaatatctat gctagaagga caagtagcta agaaagtgga ggaatcttat 2640 aagaaagata ggagtcagta caacaggaca actttgctaa ctaatatgaa ggaggacatc 2700 tacttggctg agagagggat aaatgctaag aagaggttag aagaaccaga tgtgaaattt 2760 tatcgagatc agtctaagag gcctttccat ccttttgtga gtgaaaccag agacatagag 2820 cagttcactc agaaagagtg cctagagctt aatgaagagt caggacactg ctcgctaata 2880 aatgtagagg atctagtgtt atctgctcta gagttgcatg aggtgggtga tttggagcac 2940 ttgtggaata gcataaaagc tcattctaaa acaaagtttg cattatatgc taagtttata 3000 tctgatcttg ccaccgagct agccatctca ttgtcccaga actgcaaaga agacacctat 3060 gtggttaaga aactcagaga ttttagctgc tatgtactca ttaaaccagt aaacttaaag 3120 agtaatgtgt tcttctcctt atacatacct tctaacattt ataagtcaca caacacaacc 3180 ttcaagactc tgataggcag tccagaatca gggtatatga ctgatttcgt ctctgctaat 3240 gtgagcaagt tagtgaactg ggttagatgt gaagctatga tgctagcaca aagaggtttc 3300 tggcgagaat cttatgctgt ggctcctagt attgaggaac aagatggaat ggcggagcca 3360 gagtcagtat gtcagatgat gagttggaca ctcctcatat tactaaacga caaacaccag 3420 ttagaagaga tgatcacagt gtctaggttt gttcatatgg aaggctttgt aacttttcct 3480 gcatggccta aaccttataa aatgtttgat aaattatcag taactccgag gtctaggtta 3540 gaatgtctag tcataaagag gctcattatg ctaatgaagc attattcaga gaatcccata 3600 aagtttatga tagaggatga gaagaaaaag tggtttggat ttaaaaatat gttcttgctt 3660 gattgtaatg gtagacttgc tgatctatct gatcaggatc aaatgcttaa tctcttttat 3720 cttgggtatc taaagaacaa agatgaggag gtcgaagaca atggcatggg tcaactattg 3780 actaaaattc tgggctttga gagtgccatg ccaaaaacaa gagactacct gggtatgaaa 3840 gatcctgagt atggtacaat tgagaagcat gagttctcca taagctatgt gaaggacctc 3900 tgtgataaat tcttagacag attaaaaaag acacacggaa tcaaagatcc aatcacttat 3960 ttgggagaca agatagctaa attccttagc actcagttta ttgagacaat ggcatctttg 4020 aaggcatcat ctaacttctc ggaagattac tatttataca cacccagtag aagactaaaa 4080 aaccaggagc aatctagaag taaacatgta atagaccccg gtggaaacat atcagctagt 4140 gtcaaaggca agctgtatca tagaagcaaa gtaattgaga agctcacaac cctaattaaa 4200 gacgaaacac caggaaaaga actgaaaata gtggtagatc tcttaccgaa ggctatggaa 4260 gtcctaaaca aaaatgaatg tatgcacatt tgtattttca agaagaatca gcatggtggc 4320 cttagagaaa tatatgttct taatatcttt gagagaataa tgcagaagac agtggaagat 4380 ttctctagag ccattctaga atgctgtcct agtgagacaa tgacatctcc gaaaaacaag 4440 tttagaatac ctgaattgca caacatggaa gcaaggaaaa ctctaaaaaa tgagtatatg 4500 acaatatcta ctagtgatga tgcatcgaaa tggaatcaag gtcactatgt atctaaattt 4560 atgtgtatgc tactgaggct cactccaact tattatcatg gcttcttagt tcaggctctt 4620 caactatggc atcataagaa gatattccta ggagaccagc tgttgcaatt atttaatcaa 4680 aatgctatgc taaataccat ggacacaacc ctcatgaaag tctttcaagc ctacaaaggg 4740 gagattcaag tgccttggat gaaggcaggc agatcctaca tagagactga gacaggtatg 4800 atgcagggaa ttctccacta cactagctct ctattccatg caatcttctt ggaccaactg 4860 gctgaagagt gtagaagaga tataaataga gcaattaaga caataaataa taaagaaaat 4920 gagaaagtgt cctgtatagt aaacaatatg gaaagttctg acgatagtag cttcattatt 4980 agtattccca atttcaaaga gaatgaagca gcacaattgt acctgctctg tgtggtaaac 5040 tcttggttca gaaaaaaagg gaaacttgga acttatcttg gaatatataa atctccaaag 5100 agcacaactc agacactatt tgtgatggaa ttcaactcag aattcttctt ttctggtgat 5160 gttcataggc caacttttat gtgggtcaat gcagcagtgc taataggaga gcaagagaca 5220 ttgtctggta tacaggaaga gttgtcaaat acattgaagg atgtaataaa aggtggagga 5280 acatatgccc tcacttttat agtgcaagtt gctcaagcta tgatacacta taaaatgctg 5340 ggcagtagtg cttcatcagt gtggccagca tatgaaactc ttctgaaaaa ctcatatgat 5400 cctgcacttg gtttcttcct aatggataat cctaaatgtg ctggcttgtt gggattcaac 5460 tacaatgttt ggattgcctg tacgacgaca cctttgggag agaaatatca tgaaatgata 5520 caagaagaaa tgaaggctga gtctcagagc ttaaaatcag taacagaaga tacaattaac 5580 acgggattag tttcacgaac aactatggtg ggctttggaa acaagaaaag atggatgaag 5640 ctcatgacca cactgaatct gagtgcagat gtatatgaaa agatagaaga ggagccaaga 5700 gtgtactttt tccacgcagc aacagctgaa caaatcattc agaaaattgc tattaaaatg 5760 aagagtcccg gtgtgataca gtcactgtct aaaggaaata tgctggcaag gaagatagcg 5820 tccagtgtat tcttcatatc tagacatata gtcttcacaa tgtccgctta ttatgatgca 5880 caccctgaca caaggaaaaa ctcactgctg aaggagttga ttaacagctc taaaatacct 5940 cagagacatg actatctgca ggaaccgcat acattgaagc caactaaagt tgaagttgat 6000 gaagaccgct gggaattcaa gtcagcaaaa gaagaatgca ttagagtgct aaaacaaaga 6060 atcaaaatac acactgggag agaagagaga tctattagtc ttttgtttga aaatatggct 6120 aagtcaatga ttgggaggtg cacggaccag tatgatgtta gagaaaatgt ttccattcta 6180 gcatgtgcac tgaaaatgaa ctattctata ttcaagaagg atgctgcacc caataggtat 6240 ctccttgatg agaagaacct tgtataccca ctgattggaa aggaagtatc tgtttatgtt 6300 aagtctgaca aagtacatat tgaaatatct gagaagaaag aaaggctatc aaccaaatta 6360 tttaatatag ataaaatgaa ggatatagaa gagactctct cactgctatt tcctagttat 6420 ggagattacc tatccttaaa agaaacaatt gaccaagtaa ctttccaatc agccatacac 6480 aaagttaacg agagaagaag agttagggca gatgtgcact taacagggac agaaggattt 6540 tctaagttgc caatgtatac agcagctgtc tgggcctggt ttgatgtgaa aactattcct 6600 gcacatgaca gcatttatag aactatctgg aaagtccaca aagaacaata ctcctggttg 6660 tcagatacac tgaaagagac agtggagaag ggaccattca aaacagtaca aggtgtggtt 6720 aacttcattt caagagctgg tgtgagatcg agagtcgtcc atctagtagg gtcatttggt 6780 aagaatgtca ggggtagcat aaatctggtg acggcaataa aagataactt cagcaatgga 6840 ctagttttca aagggaatat attcgatatc aaggcaaaga agactagaga aagtttggat 6900 aactacttgt caatctgcac caccctgtct caggcaccta tcaccaagca tgataagaac 6960 cagattttgc gctctctttt cgtcagtggt ccaagaatcc agtatgtgtc atcacagttt 7020 gggtcaagaa ggaacagaat gtcaatatta caagaagtcg tggctgatga tccaactcta 7080 cattggcctg accaggacac aagtcagaaa cagctggaag acaagtttag agaactagca 7140 cacaaggagc tcccatttct aacagaggaa gtatttcacg accatctgga aaagatagag 7200 cagctaatga aggagaacac tcatctaggt ggtagggatg ttgatgctag caaaacccca 7260 tatgtgcttg caagagcaaa tgatattgaa atacattgtt atgagttgtg gagagagtat 7320 gatgaggatg aagatgaagc ataccaggct tattgcagtg aagtggaggc tgctatggat 7380 caagagaaac ttaatgctct aatagagaga taccatgtag accctaaagc aaactggatt 7440 caaatgttaa tgaatggtga gattgaaaca gttgaagagt tgaacaagct tgacaagggg 7500 ttcgagagcc acagacttgc tctagtcgaa agaattaggg tgggaaaact tggaatttta 7560 ggcagttaca ccaagtgtca acagagaatt gaggagctag atggtgaagg taataagact 7620 catagataca caggagaagg tatatggaga ggttcattcg atgattccga tgtttgcata 7680 gttgtccaag acctgaagaa gacaagagag agttacttaa aatgtgttgt tttctccaaa 7740 gtgtctgatt ataaagtctt gatgggccat ctgaagacat ggtgcaggga acaccatatt 7800 agtaatgatg agtttcctac ctgtactcag aaagagcttt taagctatgg tgtcaccaag 7860 agttcagttc tattgtacaa gatgaatgga atgaaaatgt tgaggaacat ggaaaaaggt 7920 attcctctgt actggaatcc tagcttgtca actagaagcc aaacttatat caactggctt 7980 gctgttgata tcacagatca tagcttacga ctcaggaaca gaactgttga gaatgggaga 8040 gttgtaaatc agacaatcat ggttgttcct ctatataaaa ctgatgtgca gatattcaaa 8100 acatctcctg tggatcttga gcaagatgtg cagaatgata gactaaagct gttatcagta 8160 acgaaagctg gggagttgag atggcttcaa gattggataa tgtggagatc atctgctgta 8220 gatgattcga atatactaaa ccaggttcga agaaataagg ctgcaaggga tcattttaat 8280 gctaaaccag agttcaaaaa atggataaaa gagctgtggg actatgcact tgacaccaca 8340 ctaatcaaca agaaggtctt cataactaca caaggatcag agtcacagag cacagtttct 8400 tctggagata gcgacagtgc agtggcacct ttaactgatg aggcagtgga tgagattcat 8460 gatctcttgg acaaagagtt agaaaagggc accttaaaac agatcatcca tgatgcaacc 8520 atcgatgccc agcttgatat ccctgctata gagagcttcc tggctgaaga aatggaggtg 8580 ttcaagagta gcttagccaa gagccaccct cttctactaa attatgttag atacatgatt 8640 caagagatag gtgtgaccaa cttcagatca ttgattgata gctttaatca gaaagatccc 8700 ttgaaaagtg tgtctctaag catcatagac ttgaaagaag tgttcaagtt tgtgtaccag 8760 gacataaatg atgcctattt tgttaaacag gaggaagacc ataagttcga tttctgagaa 8820 gtcctctcca gcaaaggaac tgcagcacaa acacaagtcc agacaccatt gaaatccata 8880 ccaatatttc acgttttatc ccttatgact tagattttca ataattgatt atataaacaa 8940 aaacattttg ttttcctctg gactttgtgt 8970 //