ID   EF137180; SV 2; linear; genomic RNA; STD; VRL; 1183 BP.
XX
AC   EF137180;
XX
DT   10-MAY-2007 (Rel. 91, Created)
DT   17-SEP-2010 (Rel. 106, Last updated, Version 4)
XX
DE   Penaeus vannamei nodavirus segment RNA2 capsid protein gene, complete cds.
XX
KW   .
XX
OS   Penaeus vannamei nodavirus
OC   Viruses; Riboviria; Nodaviridae; unclassified Nodaviridae.
XX
RN   [1]
RP   1-1183
RX   PUBMED; 17629112.
RA   Tang K.F., Pantoja C.R., Redman R.M., Lightner D.V.;
RT   "Development of in situ hybridization and RT-PCR assay for the detection of
RT   a nodavirus (PvNV) that causes muscle necrosis in Penaeus vannamei";
RL   Dis. Aquat. Org. 75(3):183-190(2007).
XX
RN   [2]
RP   1-1183
RA   Tang K.F.J., Lightner D.V.;
RT   ;
RL   Submitted (22-NOV-2006) to the INSDC.
RL   Veterinary Science and Microbiology, University of Arizona, 1117 E. Lowell,
RL   Tucson, AZ 86721, USA
XX
RN   [3]
RC   Sequence update by submitter
RP   1-1183
RA   Tang K.F.J., Lightner D.V.;
RT   ;
RL   Submitted (14-SEP-2010) to the INSDC.
RL   Veterinary Science and Microbiology, University of Arizona, 1117 E. Lowell,
RL   Tucson, AZ 86721, USA
XX
DR   MD5; 82a37b98dd6aabd835995649fe013f0c.
XX
CC   On Sep 14, 2010 this sequence version replaced gi:132424403.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1183
FT                   /organism="Penaeus vannamei nodavirus"
FT                   /segment="RNA2"
FT                   /host="Penaeus vannamei"
FT                   /mol_type="genomic RNA"
FT                   /country="Belize"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:430911"
FT   CDS             60..1166
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:A5H7Q8"
FT                   /db_xref="InterPro:IPR000937"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="PDB:5YKZ"
FT                   /db_xref="PDB:5YL0"
FT                   /db_xref="PDB:5YL1"
FT                   /db_xref="PDB:6AB5"
FT                   /db_xref="PDB:6AB6"
FT                   /db_xref="UniProtKB/TrEMBL:A5H7Q8"
FT                   /protein_id="ABO33432.2"
FT                   /translation="MKRKPNSNQNNNNNRGNGNGLRRVRGGRVSRRRVVINQSNQSMPV
FT                   TSNGAPLQALTSYSRPNVNKISRLGPDSDFLTSVVAKASTSIVTPADRILVKQPLSASS
FT                   FPGTRITGLSSYWERYKWLSAVARYVPAVPNTVACQFVMYIDTDPLDDPSNISDDNQIV
FT                   RQAVSQAGSNQFNFNTSKTVPLIVRADNQYYYTGVDKQNLRFSLQGILYIIQVTDLINF
FT                   NGELITQDLTCGSLFLDWLVNFSIPQINPTSLTDVRVDKAVNFIKPEVSGVAEIQTVTG
FT                   LSPSTSYLLTPAFLEQNFQSEAGIYILSATPVEGEGTISINMDPTVTTVSGFIKVKTDT
FT                   FGTFDLSVVLTTASKKQTTGFNIIAATS"
XX
SQ   Sequence 1183 BP; 305 A; 268 C; 241 G; 369 T; 0 other;
     ccgcgctgag cgttaagcga cgtgatcgcg tgcggcgcaa cggatcggcg agtttactaa        60
     tgaaacgtaa accaaattct aatcagaata acaacaacaa tcgtgggaac ggcaatggac       120
     tccgccgggt gcgtggcgga agggtatctc gccgaagggt ggttatcaat caatccaatc       180
     aaagtatgcc cgtcacgagt aatggcgctc ctttgcaagc tctcacttcc tattctcgtc       240
     ccaacgttaa taaaatatct cgattgggac ctgactccga ctttctgact tctgtggtgg       300
     ccaaagcttc tactagtatc gttactccag cagaccgtat acttgttaag caaccgctat       360
     cagcctcctc cttccctggt actagaatta ctggtttgtc tagttattgg gaacgctata       420
     agtggttatc agctgtagcc cgttacgtcc cagcggtgcc aaatacagtt gcctgtcagt       480
     ttgtcatgta tattgatact gatcctctcg acgatccttc taatatatct gacgataatc       540
     aaattgtgag acaggctgtc tcacaggctg gttcaaatca gtttaatttc aatacttcca       600
     aaactgtgcc tttgatcgtt cgagcagata atcagtatta ttatactgga gtggataaac       660
     aaaatttacg tttcagtctg cagggtatcc tttatatcat tcaggttaca gatctcatta       720
     atttcaatgg tgaattgatt actcaagatc tgacctgtgg ttccctgttc ttggactggc       780
     ttgtgaattt ctctattcct caaattaatc caaccagtct tacagacgtt cgtgtggata       840
     aggcagttaa cttcattaaa cctgaagtta gtggtgttgc tgaaattcaa acggttactg       900
     gtctttcacc tagtaccagt taccttctaa cacctgcttt tctagagcag aatttccagt       960
     cagaggctgg tatttacatc ttgtctgcca caccagttga gggcgaaggt actatttcaa      1020
     tcaatatgga tcctacagtt acgactgttt caggtttcat taaggttaag accgatacct      1080
     tcggtacctt cgacctctct gtcgtcttaa ctactgctag taagaaacaa accacaggtt      1140
     tcaatattat agcagctact tcttagtttg tgtgtttatc ttt                        1183
//