ID EF125180; SV 1; linear; genomic RNA; STD; VRL; 6218 BP. XX AC EF125180; XX DT 29-MAY-2008 (Rel. 95, Created) DT 29-MAY-2008 (Rel. 95, Last updated, Version 1) XX DE Cymbidium mosaic virus clone 18-29, complete genome. XX KW . XX OS Cymbidium mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6218 RX DOI; 10.1007/s00705-008-0102-1. RX PUBMED; 18458814. RA Vaughan S.P., Grisoni M., Kumagai M.H., Kuehnle A.R.; RT "Characterization of Hawaiian isolates of Cymbidium mosaic virus (CymMV) RT co-infecting Dendrobium orchid"; RL Arch. Virol. 153(6):1185-1189(2008). XX RN [2] RP 1-6218 RA Vaughan S.P., Kuehnle A.R., Kumagai M.H.; RT ; RL Submitted (17-NOV-2006) to the INSDC. RL Tropical Plant and Soil Sciences, University of Hawaii, 3190 Maile Way, RL Honolulu, HI 96822, USA XX DR MD5; f7306afe3768120bf662238ba33dc944. XX FH Key Location/Qualifiers FH FT source 1..6218 FT /organism="Cymbidium mosaic virus" FT /host="Dendrobium sp." FT /isolate="3" FT /mol_type="genomic RNA" FT /country="USA:Hawaii" FT /isolation_source="leaf" FT /clone="18-29" FT /db_xref="taxon:12178" FT CDS 73..4326 FT /codon_start=1 FT /product="RNA dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:B3EZH2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B3EZH2" FT /protein_id="ABO41877.1" FT /translation="MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTE FT EEADCLENLGVTVNPFAIQTHTHAAAKTVENRMLEIVGTHLPKEPSTFIFLKRSKLRYL FT RRAANNKDIFQNQHIEPKDLLRYDDESCEVMPECSTSTAYISDALHFLSYAQLGKIFQD FT SPKLKILLATLVLPVEALHRHPSLYPAIYTLNYHEDGFEYIPGNHAGGAYFHEYSTLQW FT LTLGKLIINDPLKVKKPLTLTVQLIESLGANHLLLITRGDLRTPKLRTFAKDTHVLLPQ FT IFHPKGMNANKPLSKRRAMQLWLYAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTH FT LVNYLLFISHLSSVSSYDDILSSNIFQHFTIPIKNKIRELAQLFTGADQFNQLLKALDW FT QTFSYSMPVETIHTRAANYQVAKTLRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQ FT DPSSSEAEDSEDDTDSIDLNLPPTHGLPSNFDPLDKGKSIIVDTDSPSTSAAPAVTFAA FT GINSSASTNILFGSFTPEAEGPPPPPMEKLPWDLWIPLLEQHGFKGKSKLYKPTGELIC FT PITEIKTVPHCPFPDKVPDGCVLALKSIKRFATKMTMLSSRASAYTSDIKNSRTGKLLP FT AMNMPWKASLAYVTQHGDREIPGVVIHGAGGCGKSYAIQRWLRSCSDPCAATVVCPTLE FT LRNDWLNKIGSYEQTNIKTFEKALIQPVNNVVIFDDYTKLPPGYIETMVYHHHNLDLII FT LTGDPMQSAYHETNRDAYISLIPDASAIFSEYCEFNINATHRNVAELACLLGVYSERQG FT KLTVSFSAAPLSKGKLPILVPSRMKQEAFADVGNRCMTYAGCQGLTAPKIQILIDNHTT FT FCSEQTLYTCLSRAVDQIHFINTGPNSQAFWTKLESTPYLKAFLDNYREEQTERLTSTA FT PEPEVREPAAPKTHIPVENTSGLRISALDLPEKHSREIFNKAHGFSNAIQGDGVAPMFQ FT HQQAKDETLFKATIDARLSITHPAENKREFAMKKDTGDVLFVNYKAIMNLPHEPVPFEP FT RLWNICKAEVQNTYLAKPIANLINGTLRQSPDFPANKIALFLKSQWVKKIEKIGAIPVK FT PGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILEHWSHKQV FT AHTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG FT EGPTFDANTECSIAYNATRYHINEDVTQVYAGDDMAMDHVCPEKKSFKALEKKLKLTSK FT PLYPKQKPGDWADFCGWTITPYGIIKNPKKLDACLQLHTQLGDADKVARSYALDAKYAY FT DLGDRIHEVLNVDEMTSHFNVIRQLHKLHQQDVLVPPETTVATAVKSQPDVEDLWLRAL FT SFPDWTDRAQLLKRG" FT CDS 4332..5033 FT /codon_start=1 FT /product="triple gene block 1" FT /note="TGB1" FT /db_xref="GOA:B3EZH3" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B3EZH3" FT /protein_id="ABO41878.1" FT /translation="MELAYLVRLLEHNKFERTNLPLSSPLVVHGIAGSGKSTILTAFHH FT HYPVHPIFSHSPTLLDPSNRVYQQCITTDSVPDGAIVDEYNYKALDYSRCLALFGDPLQ FT LPHSLQPHYYSSRTHRYGPKLTSLLNDLFHLSITSLNPVDSLDYADPFAVDPSGFTIAD FT EEVYNFVSQQVPGTLLPLDTVGLEYSSVSFYCSDLRHCVALRPLSTFIALTRAKGNLTI FT FDFNARFSSTT" FT CDS 5008..5346 FT /codon_start=1 FT /product="triple gene block 2" FT /note="TGB2" FT /db_xref="GOA:B3EZH4" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:B3EZH4" FT /protein_id="ABO41879.1" FT /translation="MPGLVPPPDHSKSLFALAIGITVVSALFVLKSHTFPIAGDNIHRF FT PSGGQYKDGTKQINYCPPTHARYPKYPDYKWLAATAAIVIPLCLYISYHPGNNIRRICP FT CCNTYHHP" FT CDS 5201..5476 FT /codon_start=1 FT /product="triple gene block 3" FT /note="TGB3" FT /db_xref="GOA:B3EZH5" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:B3EZH5" FT /protein_id="ABO41880.1" FT /translation="MLGTRNILTTSGSPLPPPSSSLSAYIFPTILAIIFAVFALVAIHI FT TTPEPFCTIHIDGASITITNCPDPAAILDKVAIGPWRGLSYHNNLK" FT CDS 5479..6150 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:B3EZH6" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:B3EZH6" FT /protein_id="ABO41881.1" FT /translation="MGEPTPTPAATYSAADPTSAPKLADLAAIKYSPVTSSIATPEEIK FT AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGSCPTKPDVRRAALAAQIF FT VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP FT AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLYALPAPPT FT E" XX SQ Sequence 6218 BP; 1644 A; 1813 C; 1227 G; 1534 T; 0 other; gaaaaccaaa cctcacgtct aatccgctat ccgagcgaaa tagcagcccc agcataggca 60 atatcgcgct ccatggcccg agtacgtgac acccttgaca ggctccgtga tccgtcggtc 120 ctcacctcaa ttaacgagga agctcaccga catatccgcc ctgtccttgc ctcggcactc 180 gtaaactgcc cttacgcgtt gaccgaggaa gaggccgact gtctcgaaaa tctcggcgtg 240 acagtcaatc ccttcgccat ccaaacgcat acacatgctg cagctaaaac tgttgaaaat 300 cgcatgttgg aaattgttgg tacccacctt cctaaagaac cctccacctt catattcctt 360 aagcggagca agcttcgcta cctacgacgc gccgccaaca acaaagacat atttcaaaac 420 caacacattg agcctaaaga cttattgcgt tacgatgacg agtcttgtga agtaatgcca 480 gaatgctcca caagcacagc ctacatcagc gatgctctcc atttcttgag ctacgctcag 540 cttgggaaaa tattccagga ttctcccaag ctgaaaattc tgctggcaac cctggtcctc 600 cccgtggaag ccctccatag gcacccatct ctttatcctg ccatctatac tttgaactac 660 catgaagatg gctttgaata tatacccggc aatcacgccg gaggtgccta cttccacgag 720 tactccactc tgcagtggtt gactctcggg aaactaatta tcaacgatcc tttgaaagta 780 aagaaacccc ttactcttac tgtacagcta atagaaagtc taggggctaa ccatctttta 840 cttatcaccc gaggggatct tcgcacaccc aaactgcgga cattcgctaa agatacccat 900 gttctactgc cacaaatatt ccatcctaag ggtatgaacg cgaacaaacc attgtctaaa 960 cgtagagcta tgcagttgtg gctctacgcc aaatctgtta aagaggtgag cgaacgggat 1020 ctttatgcta aggtgaggca attgatcccg acttctgagt tagacctttt tgaccctgtg 1080 gaggtgaccc acttggtcaa ttacttacta ttcatcagtc acctttcctc cgtatcttcg 1140 tatgacgaca tcttgtcgtc taatatattc caacatttca ccattccaat caagaacaag 1200 atacgggaat tggcccagct attcaccgga gcggaccaat ttaatcaact gctcaaagct 1260 ctcgactggc aaacattctc gtactctatg ccagtagaga ccatccatac acgtgcggcc 1320 aattatcaag tcgctaaaac gcttcgcatg tgcagagacc taccatgcga tgaatatgat 1380 cgtgtaaagg atgtcctcag acagctccct gatggagtga cgttgtttga ggaaaacgac 1440 aagcaagatc cctcaagttc tgaagccgag gactctgagg atgacactga ctccatcgat 1500 ctcaaccttc cacccactca tggcttgccc tcaaactttg atcctctaga caagggcaag 1560 tccattatcg ttgacactga cagcccctca acttctgcgg cacctgccgt cacttttgct 1620 gccggtatca actcctcagc ctccacaaat attttatttg gaagcttcac acctgaggct 1680 gagggccccc cccctcctcc catggaaaag ttaccatggg atctttggat tcccctactg 1740 gaacaacatg gctttaaagg aaagagtaag ctgtacaagc ccacgggtga actgatctgc 1800 cccataactg aaatcaaaac agttccccac tgcccctttc ccgataaagt cccggatggc 1860 tgtgtgcttg cgcttaaatc tattaagcgt ttcgccacaa aaatgactat gctcagttct 1920 cgagcttccg cctacacttc tgacattaag aatagtagga ctgggaagct cctacccgcc 1980 atgaacatgc cctggaaagc ctctctcgct tatgtcactc aacacggtga tagagaaatt 2040 cctggcgtcg tgatccatgg tgccggtggc tgtggcaaat cttatgccat ccaaagatgg 2100 ttgagaagct gctctgatcc ttgtgcagct actgtggtat gcccaactct agaactacgt 2160 aatgactggc tcaataagat cggaagctac gaacaaacga atatcaaaac tttcgagaaa 2220 gctttaattc agccagtcaa taacgtagtt atctttgatg actacaccaa gctaccccct 2280 gggtacatcg agaccatggt gtaccatcac cacaacctcg acctaatcat actaactggg 2340 gatcctatgc agagtgccta ccatgaaact aacagggatg cctatatctc tttaatacct 2400 gatgcctctg ccatctttag tgagtactgt gagttcaaca tcaacgccac ccaccgtaat 2460 gtggctgaac tcgcttgcct cctcggcgtc tattccgaac gccaaggcaa actcactgtt 2520 tccttcagcg cagccccact ttctaaaggt aaattaccca ttctggtacc ctctagaatg 2580 aagcaagagg cttttgctga tgtcggcaac cgttgcatga cttatgccgg ttgccagggt 2640 ctcactgccc ctaaaatcca aattttgata gacaaccaca ctacgttctg ctctgaacaa 2700 acattataca cttgtctatc acgagctgtg gaccaaatcc acttcattaa cactggtccc 2760 aactcgcagg ctttctggac caaattggaa tcaacgccgt acctaaaagc tttcctcgat 2820 aattaccgtg aggaacaaac tgaacggcta acatctaccg ctccagagcc tgaagtccgt 2880 gagccagcag ccccaaaaac gcatatccct gtcgaaaata catctggctt acgtatttct 2940 gcacttgacc tgccggaaaa gcactctcgc gagattttca acaaggcgca tggcttttcc 3000 aatgctattc agggagatgg cgtagctccc atgttccagc atcaacaggc aaaggacgaa 3060 acccttttca aggctaccat agacgctaga ctctctataa cacatcctgc tgaaaataaa 3120 agagagtttg ccatgaagaa agacactggg gacgtccttt ttgtcaacta caaagctata 3180 atgaatctac ctcatgagcc tgttcctttt gaacctcgtc tctggaacat ctgcaaagct 3240 gaagtgcaga acacatacct agccaaaccc attgcaaatc ttatcaatgg taccttaagg 3300 caatcacctg attttccagc caataaaata gccttattcc tgaagtcgca atgggtgaag 3360 aaaattgaga aaattggagc cataccagtt aaacctggac agactattgc atcatttatg 3420 caagagactg ttatgctgta cggcaccatg gcacgctacc tccgtaagat gcggcaaaga 3480 taccaacccg cacacatatt catcaattgt gaaaagactc cggaggactt caataaattc 3540 atacttgaac actggtcaca caagcaagtt gcccacacta acgattttac tgcttttgac 3600 cagtcacaag atgctgccat gctccaattt gaagttatca aagctaggta cttcaacatc 3660 cccgaggacg tcatagaagg atacattcaa attaagctca ctgctgaaat cttcctcggg 3720 acactttcca tcatgcgcct atctggtgaa gggccaacct tcgacgccaa tactgaatgc 3780 tctattgcct acaacgccac cagataccat attaatgaag acgtcaccca agtatacgcc 3840 ggtgacgaca tggctatgga ccatgtgtgc cctgagaaaa agagcttcaa agctttggaa 3900 aagaaactga aattgacctc aaaacctctc tatccaaagc aaaaacctgg agactgggcc 3960 gatttctgcg gctggactat aacgccttat ggcatcatta agaatcctaa gaaacttgat 4020 gcatgcctac aattgcacac ccaactgggc gatgccgata aagtcgctag gtcatacgca 4080 ctcgatgcca aatatgctta tgatctgggc gatcgcattc atgaggttct gaatgttgat 4140 gaaatgacta gccacttcaa tgttataaga cagttgcaca aactgcatca acaagatgtg 4200 ctagtcccac ccgagactac cgtcgccaca gcggtaaagt ctcaacctga cgtggaggat 4260 ctgtggctcc gtgcgcttag cttccctgac tggacggacc gcgcccaact tttaaagcgg 4320 ggttaatttc gatggagcta gcgtacttag ttagactact agagcacaat aaattcgagc 4380 gcaccaatct gcccctttcc tcacccttag ttgtacacgg aatcgctggc agtggaaaat 4440 ccactatcct cacagctttc catcaccatt acccggttca ccctatcttc tcacacagtc 4500 ccacattgct tgaccctagc aaccgcgtat accaacagtg tatcactact gattcggtgc 4560 cagacggtgc tatcgtagac gagtacaatt acaaagcact cgactactct cgctgtctag 4620 ccctctttgg tgatccactc cagcttccac attcacttca accccactac tactctagtc 4680 gcactcaccg ctacggtccc aagctcacca gcctactcaa cgacctcttc cacctttcta 4740 tcacttctct taaccccgtc gacagccttg attacgctga tccttttgct gtcgatccct 4800 ctggattcac cattgctgac gaggaagtgt acaactttgt ctctcagcag gttcccggca 4860 ctttgctgcc gctcgatact gtagggttag aatattctag tgttagtttt tactgcagtg 4920 atctccgaca ctgtgtcgca ctaaggccac tcagcacctt catcgctctc acccgcgcca 4980 agggcaacct caccatcttc gacttcaatg ccaggtttag ttccaccacc tgaccactcc 5040 aagtcactct tcgcccttgc tattggtata actgtggtct ccgcattatt tgtgctaaag 5100 tcccacactt ttccaattgc aggcgataat attcaccgct tcccctccgg cggccaatat 5160 aaagacggta ctaagcagat aaactactgt ccacctactc atgctaggta cccgaaatat 5220 cctgactaca agtggctcgc cgctaccgcc gccatcgtca tccctctctg cctatatatt 5280 tcctaccatc ctggcaataa tattcgccgt atttgccctt gttgcaatac atatcaccac 5340 ccctgagccc ttctgtacca tacacataga cggggcgtct atcactatta ctaactgccc 5400 cgatcctgca gctatattag ataaagtagc cataggcccc tggcgagggt taagttacca 5460 caataatttg aaataatcat gggagagccc actccaactc cagctgccac ttactccgct 5520 gccgacccca cttctgcacc caagttggca gacctggctg ccattaagta ctcacctgtc 5580 acctcctcca tcgccacccc cgaagaaatc aaggccataa cccaattgtg ggttaacaac 5640 cttggcctcc ccgccgacac agtaggtacc gcggccattg acctggctcg cgcctacgct 5700 gacgtcgggg cgtccaagag tgctaccctg cttggttcct gccctacgaa acctgatgtc 5760 cgtcgcgccg ctcttgcagc gcagatcttc gtggccaacg tcaccccccg ccagttttgc 5820 gcttactacg caaaagtagt gtggaatctg atgctggcta ctaacgatcc gcccgccaac 5880 tgggccaagg ctggtttcca ggaggatacc cggtttgctg cctttgactt cttcgatgcc 5940 gtcgattcca ctgccgcgct ggagcctgct gaatggcagc gccgccctac tgaccgtgaa 6000 cgtgctgcgc actcgatcgg gaagtacggc gcccttgccc gtcagcgtat ccaaaacggc 6060 aacctcatca ccaacattgc cgaggtcacc aagggccatc ttggctccac caacactctc 6120 tatgctctgc ctgcaccccc tactgaataa cgccaaactt aataaggcgt gtggttttct 6180 aaagtttgtt tccactaccg gcataatatg cttagccg 6218 //