ID EF125179; SV 1; linear; genomic RNA; STD; VRL; 6218 BP. XX AC EF125179; XX DT 29-MAY-2008 (Rel. 95, Created) DT 29-MAY-2008 (Rel. 95, Last updated, Version 1) XX DE Cymbidium mosaic virus clone 18-30, complete genome. XX KW . XX OS Cymbidium mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6218 RX DOI; 10.1007/s00705-008-0102-1. RX PUBMED; 18458814. RA Vaughan S.P., Grisoni M., Kumagai M.H., Kuehnle A.R.; RT "Characterization of Hawaiian isolates of Cymbidium mosaic virus (CymMV) RT co-infecting Dendrobium orchid"; RL Arch. Virol. 153(6):1185-1189(2008). XX RN [2] RP 1-6218 RA Vaughan S.P., Kuehnle A.R., Kumagai M.H.; RT ; RL Submitted (17-NOV-2006) to the INSDC. RL Tropical Plant and Soil Sciences, University of Hawaii, 3190 Maile Way, RL Honolulu, HI 96822, USA XX DR MD5; 4a339756b87d1900c2a2ddd834388e4d. XX FH Key Location/Qualifiers FH FT source 1..6218 FT /organism="Cymbidium mosaic virus" FT /host="Dendrobium sp." FT /isolate="2" FT /mol_type="genomic RNA" FT /country="USA:Hawaii" FT /isolation_source="leaf" FT /clone="18-30" FT /db_xref="taxon:12178" FT CDS 73..4326 FT /codon_start=1 FT /product="RNA dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:B3EZG7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B3EZG7" FT /protein_id="ABO41872.1" FT /translation="MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTE FT EEADCLENLGVTVNPFAIQTHTHAAAKTVENRMLEIVGTHLPKEPSTFIFLKRSKLRYL FT RRAANNKDIFHNQHIEPKDLLRYDDESCEAMPECSTSTAYISDALHFLSYAQLGKIFQD FT SPKLKLLLATLVLPVEALHRHPSLYPAIYTLNYHEDGFEYIPGNHAGGAYFHEYSTLQW FT LTLGKLIINDPLKVKKPLTLTIQLIESLGANHLLLITRGDLRTPKLRTFAKDTHVLLPQ FT IFHPKGMNANKPLSKRRAMQLWLYAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTH FT LVNYLLFISHLSSVSSYDDILSSNIFQHFTIPIKNKIRELGQLFTGADQFNQLLKALDW FT QTFSYSMPVETIHTRAANYQVAKTLRMCRDLPCDEYDRVKDVLKQLPDGVTLFEEKDKQ FT DPQSSDTEDSEDDTDSIDFNLPPAHDLPPNFDPLDKGKAVFVDTDSPSTSTAPAVTFAA FT GIDSSASNKITFGNFKPEAEPLPSAPVEKLPWDLWIPLLEQHGFKGRSKLFKPTGELIC FT PITEIKTVPHIPFPDKVPDGCVLALKSIKRFATKMTMLSSRASAYTSDIKNSRTGKLLP FT AMNMPWKASLAYVTQHGDREIAGVVIHGAGGCGKSYAIQKWLRSCADPCAATVVCPTLE FT LRNDWLNKIGSYEQTNIKTFEKALIQPVNNVVIFDDYTKLPPGYIETMVYHHHNLDLII FT LTGDPMQSAYHETNRDAYISLIPDASAVFGEYCEFNINATHRNVAELACLLGVYSERQG FT KLTVSFSTAPLSKGKVPILVPSRMKQEAFADVGNRCMTYAGCQGLTAPKIQILIDNHTT FT FCSEQTLYTCLSRPVDQIHFINTGPNSQAFWTKLESTPYLKAFLDNYREEQTERLTSIA FT PEPVVREPAAPKTHIPVENVSGLRITALDLPEKHEREIFNKAHGFSNGFQGDGVAPMFQ FT HQQAKDETLYKGTIDARLSITHPDENKREFAMKKDTGDVLFVNYKAIMNLPHEPVPFEP FT RLWNICKAEVQNTYLAKPIANLINGTLRQSPDFPANKIALFLKSQWLKKIERIGAIPVK FT PGQTIASFMQETVMLYGTMARYLRKMRQRYQPARIFINCEKTPEDFNKFILEHWSHKQV FT AHTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG FT EGPTFDANTECSIAYNATRYHINEDVTQVYAGDDMAMDHVCPEKKSFKALEKKLKLTSK FT PLYPKQKPGDWADFCGWTITPYGIIKNPKKLDACLQLHTQLGDADKVARSYALDAKYAY FT DLGDRIHEVLNAEEMTSHFNVIRQLHKLHQQDVLVPPETTVATAEKSPVDIKDLWLRAL FT SFPDWTDRAQLLKRG" FT CDS 4332..5033 FT /codon_start=1 FT /product="triple gene block 1" FT /note="TGB1" FT /db_xref="GOA:B3EZG3" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B3EZG3" FT /protein_id="ABO41873.1" FT /translation="MELAYLVRLLEHNKFERTNLPLSSPLVVHGIAGSGKSTILTTFHH FT HYPAYPIFSHSPTLLDPSNRIFQQCITTDSVPDGAIVDEYNYKSLDYSRCLALFGDPLQ FT LPHSLQPHYYSSRTHRYGPKLTALLNNLFHLSITSLAPVDSLEYADPFAVDPSGFTIAD FT EEVYNFVSQQVPGTLLPLDTVGLEYPSVSFYCSDLHAVALQRPLTTFIALTRAKGHLTI FT FDFNARIGSSA" FT CDS 5008..5346 FT /codon_start=1 FT /product="triple gene block 2" FT /note="TGB2" FT /db_xref="GOA:B3EZG4" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:B3EZG4" FT /protein_id="ABO41874.1" FT /translation="MPGLVPPPDHSKSLFVLAIGITVVTALFVLKSHTFPIAGDNIHRF FT PSGGQYKDGTKQINYCPPAHARYPKYPDYKWLAAAAALTIPLCLYLSYHPGNNIRRICP FT CCNTYHHP" FT CDS 5201..5476 FT /codon_start=1 FT /product="triple gene block 3" FT /note="TGB3" FT /db_xref="GOA:B3EZH0" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:B3EZH0" FT /protein_id="ABO41875.1" FT /translation="MLGTRNIPTTSGSPLPPPSPFLYAYIFPTILAIIFAAFALAAIHI FT TTPEPLCTIHIDGAAITITNCPDPAVILEKVAIGPWRWLSYHNNLK" FT CDS 5479..6150 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:Q5K6C6" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q5K6C6" FT /protein_id="ABO41876.1" FT /translation="MGEPTPTPAATYSAADPTSSPKLADLTAIKYSPVTSSIATPEEIK FT AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGVCPTKPDVRRAALAAQIF FT VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP FT AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLYALPAPPT FT E" XX SQ Sequence 6218 BP; 1641 A; 1860 C; 1233 G; 1484 T; 0 other; gaaaaccaaa cctcacgtct aatccgctat ccgagtgaaa tagcagcccc agcataggca 60 atatcgcact ccatggcccg agtacgtgat acccttgaca ggctccgtga tccgtcggtc 120 cttacctcaa taaacgagga agcccaccga catatccgac ctgtcctcgc ctcagcactc 180 gtaaactgcc cttacgcgtt gactgaggaa gaggcagact gtctcgaaaa tcttggcgtg 240 acagtcaacc ctttcgccat ccagacgcat acacatgctg cggctaaaac tgtggaaaac 300 cgcatgttgg aaattgttgg cacccacctc cctaaagaac cctccacatt catattcctt 360 aagcggagca agctccgtta cctgcgacgc gccgccaaca acaaagacat tttccacaat 420 caacatattg agcctaagga tctattgcgt tatgatgacg agtcttgtga agctatgcca 480 gagtgctcca caagcacagc ctacattagc gatgctctac atttcctgag ctacgctcaa 540 cttgggaaaa tattccagga ttctcccaag ttgaaacttc tgctggcaac cctggttctc 600 cccgtggaag ccctgcatcg gcacccctcc ctctatcctg ccatctatac actcaattac 660 cacgaagatg gcttcgaata catacccggc aatcatgccg gaggtgccta cttccacgag 720 tactccactc tgcagtggtt gactctcggg aaactaataa taaacgatcc tttgaaagta 780 aagaaacccc tcactctcac tatacagtta atagagagtt taggggctaa ccatctttta 840 cttatcaccc gaggggatct tcgcacaccc aaactgcgca cattcgcgaa agatactcat 900 gtgctactgc cccaaatctt ccaccctaag ggcatgaatg cgaataagcc gctatctaag 960 cgtagagcaa tgcagctgtg gctctatgcc aaatccgtta aagaggtgag cgaaagggat 1020 ctgtatgcta aggtgaggca attgatccct acttctgaac tggacctatt cgacccggtg 1080 gaggtgaccc acctggttaa ttacttacta ttcattagtc acctttcttc cgtatcttcc 1140 tatgacgaca tcttgtcgtc taacattttc cagcacttca ctattcccat taagaataag 1200 atacgggaat tgggccagct tttcaccggc gctgaccaat tcaaccagct gcttaaagct 1260 cttgactggc aaaccttttc atactcaatg ccagttgaga ccatccacac acgtgcggcc 1320 aactatcaag tcgctaaaac gcttcgcatg tgtagagacc tcccatgcga tgaatatgat 1380 cgtgtgaagg atgtcctcaa acagctcccc gatggagtga cactgtttga ggaaaaggac 1440 aaacaagacc cccagagttc tgataccgag gactctgagg acgacaccga ctccatcgac 1500 ttcaaccttc cccctgctca cgacttacca ccaaactttg acccactaga caaaggtaag 1560 gccgtgttcg tcgacaccga cagcccttca acttccacag cacccgctgt gacctttgct 1620 gccggtatcg attcctcagc ctctaacaaa attactttcg ggaatttcaa acctgaggct 1680 gagccccttc cttcagctcc tgtggagaag ttgccatggg acctttggat ccccctgctt 1740 gaacaacatg gctttaaagg gagaagtaaa ctattcaagc ctacgggtga actgatatgc 1800 ccaatcactg aaattaaaac agttccccac attccattcc ctgacaaagt ccctgatggc 1860 tgtgtgcttg cgcttaaatc tattaagcgt tttgccacta aaatgacaat gctcagttcc 1920 cgggcctctg cttacacctc tgacatcaag aatagtagga ccgggaagct tttgcccgcc 1980 atgaacatgc catggaaagc ctccctcgcc tatgtcaccc aacatggtga ccgcgagatt 2040 gctggagttg tcatccatgg cgctggcggc tgtggcaaat cttacgccat acagaaatgg 2100 ttgaggagct gcgccgaccc ttgtgcggcc actgtggtct gccctactct tgaactacgc 2160 aacgactggc tcaataaaat cggaagttac gaacaaacta acatcaaaac tttcgaaaaa 2220 gctttaattc agccagtcaa taacgtagtt atctttgatg attacaccaa gttacccccc 2280 gggtacattg agaccatggt gtatcatcac cacaacctcg accttataat tcttactggg 2340 gatcctatgc agagtgccta tcatgaaact aacagggacg catatatttc tctaatccct 2400 gatgcctctg cagttttcgg tgagtactgc gagttcaaca ttaacgccac ccaccgcaac 2460 gtcgccgaac tcgcatgcct tctaggtgta tactctgaac gccaaggcaa actcaccgtg 2520 tccttcagca cggccccact ttctaaaggc aaagtaccta tactggtacc ctctagaatg 2580 aagcaagagg cttttgctga tgttggcaac cgttgcatga cttatgccgg ttgccagggt 2640 ctcactgccc caaaaatcca aattctgata gacaatcaca ccacattctg ctctgaacaa 2700 actctataca cttgtctatc acgacccgtg gaccaaatac acttcattaa cacaggtccc 2760 aactcgcaag cgttctggac taagctggaa agtactccgt acctcaaagc ctttctggac 2820 aattaccgcg aggaacaaac ggagagatta acatcaatcg ctccagaacc tgtggtgcgt 2880 gaaccagcag ccccaaaaac ccatattcct gttgaaaatg tctctggttt acgcatcact 2940 gcactcgacc ttccggagaa gcatgaacgc gaaattttca acaaagcgca tgggttctcc 3000 aatggttttc aaggggacgg cgtagccccc atgttccagc atcaacaggc taaagacgaa 3060 accctttaca agggtaccat agacgccaga ctctcaataa cccaccctga tgaaaacaaa 3120 cgagagtttg ccatgaagaa agacactggt gacgtcttat tcgtgaatta caaagccata 3180 atgaatctac ctcacgagcc tgttcctttc gaacctcgcc tctggaacat ctgtaaggcc 3240 gaagtgcaaa acacctattt ggccaagccc attgctaacc tgattaatgg caccttaagg 3300 caatcacctg attttcctgc caataaaatc gccttatttc tgaaatcaca atggttaaag 3360 aaaatagaga ggattggagc cataccagtc aaacctggac aaacaattgc ctctttcatg 3420 caggaaactg ttatgttata tggcaccatg gcgcgctacc tccgaaaaat gcggcaaagg 3480 tatcaacctg cccgcatatt cataaattgc gaaaagaccc cggaggactt caacaaattc 3540 atacttgagc actggtccca caagcaagtt gcacacacca atgacttcac agcctttgac 3600 cagtcacaag acgctgccat gctccaattt gaagtcatta aagctagata ctttaacatt 3660 cccgaggatg ttatagaagg atacatccaa atcaaactca ctgccgaaat attcctcggg 3720 accctctcta ttatgcgcct atctggtgaa gggccaactt ttgacgccaa tactgaatgc 3780 tccattgcat acaatgccac cagataccac attaatgaag atgtcaccca agtctacgcc 3840 ggtgacgaca tggccatgga ccatgtctgc ccagaaaaga aaagcttcaa agctttggag 3900 aagaaactaa aactcacttc caaacctctc tacccaaagc aaaaacccgg agactgggcc 3960 gacttctgcg gctggactat aacgccctac ggcattatca agaatccaaa gaagcttgat 4020 gcatgcctac aattgcacac ccagctgggc gatgccgaca aagtcgctag atcgtatgcc 4080 ctcgatgcaa aatacgctta cgatctcggc gatcgcattc atgaggttct gaacgctgaa 4140 gaaatgacta gccactttaa cgtcataaga cagctacaca aattacatca acaagatgtg 4200 ctagtcccgc ctgagactac cgtagccaca gcggaaaagt ctccagttga catcaaagac 4260 ctgtggctcc gtgcgcttag cttcccagat tggacggacc gcgcccaact tttaaaacgg 4320 ggttaatttc gatggagcta gcgtacttag ttagactatt agagcataat aagttcgagc 4380 gcaccaactt gcctctttcc tcacctctcg ttgtccacgg aatcgccggc agtggtaaat 4440 ccaccattct gaccaccttc caccatcact acccagctta ccccatattc tcacatagcc 4500 ctaccttgct tgaccctagc aaccgcatct tccaacagtg catcaccacc gattctgtgc 4560 cagacggtgc tatagtcgac gagtataatt acaaatctct agactattcc cgctgcctag 4620 ctctcttcgg tgaccctctt cagcttccgc actcactcca gccccattac tactccagcc 4680 gcacgcaccg ctacgggcct aagctaaccg ccctactcaa caacctcttc cacctttcta 4740 tcacctctct cgctcctgtc gacagcctag aatacgccga cccctttgct gtcgatccct 4800 ctggtttcac cattgccgac gaggaagttt acaacttcgt ctcccagcag gttcctggca 4860 ctttgctgcc gctcgacact gtaggtttag aataccctag tgttagcttt tactgcagtg 4920 atcttcacgc cgttgccttg cagaggcctc ttaccacttt cattgcactc actcgcgcca 4980 agggtcatct taccatcttc gacttcaatg ccaggattgg ttcctccgcc tgaccattcc 5040 aaatccctct ttgtccttgc tattggcatc accgtggtga ccgcactgtt tgtgcttaaa 5100 tcccacacct ttccaatagc aggcgacaac attcatcgct tcccatccgg cggccagtat 5160 aaagacggta ccaagcagat aaactactgc ccacccgccc atgctaggta cccgaaatat 5220 cccgactaca agtggctcgc cgctgccgcc gccctcacca ttcctttatg cctatatctt 5280 tcctaccatc ctggcaataa tattcgccgc atttgccctt gctgcaatac atatcaccac 5340 ccctgagcct ctctgcacca tacacattga cggggcagca attactatca ctaattgccc 5400 tgatcctgca gttatattag agaaagtagc aataggcccc tggcgatggt taagttacca 5460 caataatttg aaataactat gggagagccc actccaactc cagctgccac ctactccgct 5520 gccgacccca cttcatcacc caagctggcc gaccttaccg ccatcaagta ctcaccggtc 5580 acctcatcaa tcgccacacc cgaagagatc aaggccataa cccagctgtg ggttaacaac 5640 cttggcctcc ccgccgacac tgtaggtacc gcggccattg atttggctcg tgcctacgct 5700 gacgtcgggg cttccaagtc tgctaccctg cttggtgtct gtcccacaaa gccagatgtc 5760 cgccgcgccg ctcttgccgc gcagatcttc gtggccaatg tcactcctcg ccagttttgc 5820 gcttattacg cgaaagtggt gtggaatctg atgctggcca ccaatgatcc gcccgccaat 5880 tgggccaagg ctggtttcca ggaagatacc cggtttgccg cctttgactt ctttgacgcc 5940 gtcgactcca ctgccgcttt ggaacccgct gaatggcaac gtcgccctac cgaccgtgag 6000 cgtgccgccc actcaatcgg gaagtacggt gctcttgccc gccagcgcat ccaaaacggc 6060 aacctcatca ccaacattgc cgaggttacc aaaggccatc ttggctccac taacaccctc 6120 tatgcgctgc ctgcacctcc tactgaataa cgccaaactt aataaggcgt gtggttttct 6180 aaagtttgtt tccactaccg gcataatatg cttagccg 6218 //