ID EF110890; SV 1; circular; genomic DNA; STD; VRL; 2752 BP. XX AC EF110890; XX DT 17-MAY-2007 (Rel. 91, Created) DT 17-MAY-2007 (Rel. 91, Last updated, Version 1) XX DE Tomato yellow leaf curl virus from USA, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2752 RX DOI; 10.1094/PDIS-91-4-0466A. RX AGRICOLA; IND43907538. RA Isakeit T., Idris A., Sunter G., Black M.C., Brown J.; RT "Tomato yellow leaf curl virus in Tomato in Texas, Originating from RT Transplant Facilities"; RL Plant Dis. 91(4):466-466(2007). XX RN [2] RP 1-2752 RA Idris A., Brown J.; RT ; RL Submitted (09-NOV-2006) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; d2f7d4fc183bdbf05c466e900d4dbe08. DR EuropePMC; PMC2074955; 17827315. DR EuropePMC; PMC4091138; 19264617. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Tomato yellow leaf curl virus" FT /chromosome="DNA-A" FT /host="Lycopersicon esculentum" FT /mol_type="genomic DNA" FT /country="USA:Texas" FT /db_xref="taxon:10832" FT CDS 148..498 FT /codon_start=1 FT /product="V2" FT /db_xref="GOA:Q6VYI2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q6VYI2" FT /protein_id="ABQ42707.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKS" FT CDS 308..1084 FT /codon_start=1 FT /product="coat protein" FT /note="V1" FT /db_xref="GOA:A5H7G4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A5H7G4" FT /protein_id="ABQ42708.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDIPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1081..1485) FT /codon_start=1 FT /product="C3" FT /db_xref="GOA:A5H7G5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5H7G5" FT /protein_id="ABO31306.1" FT /translation="MDSRTGELITAPQAKNGVFIWEINNPLYFKITDHSPRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFRYEVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT CDS complement(1226..1633) FT /codon_start=1 FT /product="C2" FT /db_xref="GOA:A5H7G6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5H7G6" FT /protein_id="ABO31305.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGKEWRFYLGDKQSPLFQDNRPQPEAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1542..2615) FT /codon_start=1 FT /product="rep-associated protein" FT /note="C1" FT /db_xref="GOA:A5H7G7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5H7G7" FT /protein_id="ABO31304.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNIETPTNKKYIKVC FT REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTQDSQEETNKA" XX SQ Sequence 2752 BP; 751 A; 526 C; 599 G; 876 T; 0 other; accggatgac cgcgcctttt ccttttatgt ggtccccacg agggttacac agacgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtattttgtc ttgcaatatg tgggacccac ttctaaatga atttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgagccca atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag caaccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agtcctgata ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcagcgg gatgatatta agcacactgg tgttgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtcggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 ctttttggtc cgtgatagaa ggccctatgg aagcagtcca atggattttg gacaggtttt 780 taatatgttc gataatgagc ccagtactgc aactgtgaag aatgatttgc gtgataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtac gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac 1140 atcatacaat acatgatcca ctgctctgat tacattgtta atggaaatta caccaagact 1200 atctaaatac ttaagaactt catatctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccatta ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggcctcgg 1380 gctgtggtct gttatcttga aatagagggg attgtttatc tcccagataa aaacgccatt 1440 ctttgcctga ggagcagtga tgagttcccc tgtgcgtgaa tccatgatta ttgcagttga 1500 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attggtttct 1560 tcttggctat cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagttgg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1800 aattctttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccatgca 1860 tcattactgt acacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg cccacattgt tttgcctgtt ctgctatcac cctcaatgac aatacttatg 1980 ggtctccatg gccgcgcagc ggaagacacg acgttctcgg cgacccactc ttcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga 2100 ctaaaaatcc gatctaaatt tgaacttaaa ttatgaaatt gtaaaatata gtcctttggg 2160 gccttttctt ttagtatatt gagggcctcg gatttactgc ctgaattgag tgcttcggca 2220 tatgcgtcgt tggcagattg ctgacctcct ctagctgatc tgccatcgat ttggaaaact 2280 ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340 gctgcctgaa tgtttggatg gaaatgtgct gatctgtttg gggataccaa gtcgaagaac 2400 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt gaaattctct gcaaactttg atgtattttt tatttgttgg ggtttctatg 2520 ttttttaatt gggaaagtgc ttcctcttta gagagagaac aattgggata tgttaggaaa 2580 taatttttgg catatatttt aaataaacga ggcatgttga aatgaatcgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tatttatacc tcgacaccta atggcaattc 2700 aaaattcaaa attcaaaaat caaattatta aagcggtcat ccgtataata tt 2752 //