ID EF105294; SV 1; linear; genomic RNA; STD; VRL; 2680 BP. XX AC EF105294; XX DT 11-DEC-2006 (Rel. 90, Created) DT 11-DEC-2006 (Rel. 90, Last updated, Version 1) XX DE Rupestris stem pitting-associated virus isolate RSP47-4 replicase gene, DE partial cds; triple gene block protein 1, triple gene block protein 2, and DE triple gene block protein 3 genes, complete cds; and capsid protein gene, DE partial cds. XX KW . XX OS Grapevine rupestris stem pitting-associated virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus. XX RN [1] RP 1-2680 RX DOI; 10.1007/s007050050623. RX PUBMED; 10603163. RA Meng B., Zhu H.Y., Gonsalves D.; RT "Rupestris stem pitting associated virus-1 consists of a family of sequence RT variants"; RL Arch. Virol. 144(11):2071-2085(1999). XX RN [2] RP 1-2680 RA Meng B., Gonsalves D.; RT ; RL Submitted (06-NOV-2006) to the INSDC. RL Molecular and Cellular Biology, University of Guelph, 50 Stone Road East, RL Guelph, Ontario N1G 2W1, Canada XX DR MD5; 932db9c81bb109baeed1a03849406300. XX FH Key Location/Qualifiers FH FT source 1..2680 FT /organism="Grapevine rupestris stem pitting-associated FT virus" FT /host="Vitis (grapevine hybrid)" FT /isolate="RSP47-4" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="cambium scrapings" FT /db_xref="taxon:196400" FT CDS <1..826 FT /codon_start=2 FT /product="replicase" FT /note="ORF1" FT /db_xref="GOA:A1E443" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A1E443" FT /protein_id="ABL10063.1" FT /translation="AGQTLACFQHAVLVRFAPYMRYIEKKLVQALKPNFYIHSGKGLDE FT LSEWVRARGFTGVCTESDYEAFDASQDHFILAFELQIMRFLGLPEDLILDYEFIKIHLG FT SKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANRRLRLKTE FT HAGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLDNCIDNY FT AIEVSYAYRLGELSIGVMTEEEVEAHSNCVRFLVRNKHKMRCSISGLFEVIV" FT CDS 857..1522 FT /codon_start=1 FT /product="triple gene block protein 1" FT /note="TGBP1; ORF2; involved in virus movement; contains FT helicase and NTPase signature domains" FT /db_xref="GOA:A1E444" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:A1E444" FT /protein_id="ABL10064.1" FT /translation="MNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISED FT EAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQN FT VSIPREAHFIKTKTCRFGTNTCKYLQSFGFNVCSDGVDKVVVGSPFELEVEGVLICFGK FT EAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ" FT CDS 1524..1877 FT /codon_start=1 FT /product="triple gene block protein 2" FT /note="TGBP2; ORF3; involved in virus movement; contains FT two transmembrane domains" FT /db_xref="GOA:Q05JC5" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q05JC5" FT /protein_id="ABL10065.1" FT /translation="MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFP FT HGGHYRDGTKSITYCGPRQSFPSSGIFGQSENFVPLILVVTLVAFIHALSLWNSGPSRS FT CNCHPNPCTCRQQ" FT CDS 1798..2040 FT /codon_start=1 FT /product="triple gene block protein 3" FT /note="TGBP3; ORF4; involved in virus movement; contains FT transmembrane domain" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:A1E446" FT /protein_id="ABL10066.1" FT /translation="MRYLFGILVLVGVAIAIQILAHVDSSSGNHQGCFIRATGESIVIE FT NCGPSEALAATVKEVLGGLKALGVSQKVDEINYSC" FT CDS 2050..>2680 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF5" FT /db_xref="GOA:A1E447" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:A1E447" FT /protein_id="ABL10067.1" FT /translation="MASQVGKLPGESNEAYEARLKALELARAQKAPEVSNQPPTLGGIL FT AKRKRVIENALSKTVDMREVLRHESVVLSPNVMDEGAIDELIRAFGESGIAENVQFDVA FT IDIARHCSDVGSSQRSTLIGKSPFCELNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLE FT TGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKA" XX SQ Sequence 2680 BP; 734 A; 515 C; 674 G; 757 T; 0 other; ggctgggcaa actttggcct gctttcaaca cgccgtcttg gttcgctttg caccctacat 60 gcgatacatt gaaaagaagc ttgtgcaggc attgaaacca aatttctaca ttcattctgg 120 caaaggtctt gatgagctaa gtgaatgggt tagagccaga ggtttcacag gtgtgtgtac 180 tgagtcagac tatgaagctt ttgatgcatc ccaagatcat ttcatcctgg catttgaact 240 gcaaatcatg agatttttag gactgccaga agatctgatt ttagattatg agttcatcaa 300 aattcatctt gggtcaaagc ttggctcttt tgcaattatg agattcacag gtgaggcaag 360 caccttccta ttcaatacta tggccaacat gctattcact ttcctgaggt atgagttgac 420 aggttctgaa tcaattgcat ttgctggaga tgatatgtgt gctaatcgca ggttaagact 480 caagactgag cacgccggct ttctaaacat gatctgtctc aaagctaagg tgcagtttgt 540 cacaaatccc accttctgtg gatggtgttt gtttaaagag ggaatcttta aaaaacccca 600 gctcatttgg gaaaggatct gcattgctag ggaaatgggt aacttggaca attgcattga 660 caattacgca attgaggtgt cttatgctta cagacttggg gaattgtcca taggcgtgat 720 gactgaggag gaagttgaag cacattctaa ctgcgtgcgt ttcctggttc gcaataagca 780 caagatgagg tgctcaattt ctggtttgtt tgaagtaatt gtttaggcct taagtgtttg 840 gcatggtgtg agtattatga ataacttagt caaagctttg tctgcttttg aatttgttgg 900 tgtgttttgt gtacttaaat ttccagttgt tgttcacagt gttccaggta gcggtaaaag 960 tagcctaata agggagctca tttctgaaga cgaggctttt gtggccttta cagcaggtgt 1020 gccagacagt ccaaatctga cagggaggta catcaagccc tacgctccag ggtgtgcagt 1080 gcaagggaaa ataaacatac ttgatgagta cttgtctgtc tctgatactt ctggctttga 1140 tgtgctgttc tcagaccctt accagaatgt cagcattcca agggaggcac acttcataaa 1200 aaccaaaacc tgtaggtttg gtaccaacac ctgcaagtac cttcaatctt ttggctttaa 1260 tgtttgtagt gatggggtgg ataaagttgt tgtagggtcg ccatttgaac tggaggttga 1320 gggggttctc atttgctttg gaaaggaggc tgtagatcta gcagttgcac acaattctga 1380 cttcaagttg ccctgcgagg tgcggggttc aacatttgac gttgtaacgt tattgaagtc 1440 cagggatcca acttcagaag ataagcattg gttctacgtt gcagccacaa ggcatcgaag 1500 taaactgata ataatgcagt aaaatgcctt ttcagcaacc tgccaactgg gctaagacca 1560 taactccatt aactattggt ttgggcattg ggttggttct gcacttctta aggaaatcaa 1620 atctgccata ttcaggagac aatattcacc agttcccaca cggagggcat tacagggacg 1680 gcacgaagag tataacctat tgtggcccta ggcagtcatt cccaagctca ggaatattcg 1740 gtcagtctga aaatttcgta cctctaatat tggtcgtgac tctggtcgct tttatacatg 1800 cgttatctct ttggaattct ggtcctagta ggagttgcaa ttgccatcca aatccttgca 1860 catgtagaca gcagtagtgg caaccatcaa ggctgtttca taagagccac cggggagtca 1920 atagtaattg agaattgtgg gccgagcgag gccctagctg ctacagtcaa agaggtgttg 1980 ggcggtctaa aggctttagg ggttagccaa aaggttgatg aaattaatta cagttgttga 2040 gacagttgaa tggcaagtca agttggaaaa ttgcctggcg aatcaaatga agcatatgag 2100 gctagactca aggctttaga gttagcaagg gcccaaaaag ctccagaagt ctccaaccaa 2160 cctcccacac ttggaggcat tctagccaaa aggaaaagag tgattgagaa tgcactctca 2220 aagacagtgg atatgcgtga agtcttaagg catgaatctg ttgtactctc cccgaatgta 2280 atggacgagg gagcaataga cgagctgatt cgtgcctttg gggagtcggg catagctgaa 2340 aatgtgcagt ttgatgttgc aatagacatt gctcgccact gttctgatgt ggggagctct 2400 cagaggtcaa cccttattgg taaaagcccc ttctgtgagt taaataggtc tgaaattgcc 2460 ggaataataa gggaggtgac cacgctgcgc agattttgca tgtactacgc aaagattgtg 2520 tggaacatcc atttggagac gggaatacca ccagctaatt gggccaagaa aggatttaat 2580 gagaatgaaa agtttgcagc ctttgacttc ttccttggag tcacagatga aagcgcgctt 2640 gagcctaagg gtggagtcaa gagagctcca acaaaagcag 2680 //