ID EF103901; SV 1; linear; genomic RNA; STD; VRL; 5715 BP. XX AC EF103901; XX DT 27-DEC-2006 (Rel. 90, Created) DT 21-APR-2007 (Rel. 91, Last updated, Version 2) XX DE Grapevine leafroll-associated virus 1 replicase and RNA dependent-RNA DE polymerase genes, partial cds; hypothetical protein and heat shock protein DE 70-like protein genes, complete cds; and heat shock protein 90-like protein DE gene, partial cds. XX KW . XX OS Grapevine leafroll-associated virus 1 OC Viruses; Riboviria; Closteroviridae; Ampelovirus. XX RN [1] RP 1-5715 RX DOI; 10.1016/j.virusres.2006.10.014. RX PUBMED; 17129630. RA Prosser S.W., Goszczynski D.E., Meng B.; RT "Molecular analysis of double-stranded RNAs reveals complex infection of RT grapevines with multiple viruses"; RL Virus Res. 124(1-2):151-159(2007). XX RN [2] RP 1-5715 RA Prosser S.W., Goszczynski D.E., Meng B.; RT ; RL Submitted (03-NOV-2006) to the INSDC. RL Molecular and Cellular Biology, University of Guelph, 50 Stone Road East, RL Guelph, Ontario N1G 2W1, Canada XX DR MD5; 01d350efc8c5aadab6c63fe3173319e4. XX FH Key Location/Qualifiers FH FT source 1..5715 FT /organism="Grapevine leafroll-associated virus 1" FT /strain="WC" FT /mol_type="genomic RNA" FT /country="South Africa" FT /db_xref="taxon:47985" FT CDS <1..1146 FT /codon_start=1 FT /product="replicase" FT /note="ORF1a" FT /db_xref="GOA:A1YLW4" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:A1YLW4" FT /protein_id="ABM05860.1" FT /translation="GTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFHD FT AMNLRGCVGLAKRALVGEYTKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTG FT SAADINSAIQAREGKKEPDLVAKTANSWIVNSRPRPNSHVGLIDEVYMLHKGMFQLTVA FT AMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFPEELIEYTDISYRCPADVCYVLSSM FT TDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRVV FT AKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFTRKPHIVVALSRHTHSMK FT YAVLSSKMSDTISKLIDGTYAGKVSDVLLQQLQRNDRFRID" FT CDS <1094..2677 FT /codon_start=1 FT /product="RNA dependent-RNA polymerase" FT /note="RdRp; ORF1b; likely produced via +1 ribosomal FT frameshifting mechanism" FT /db_xref="GOA:A1YLW5" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A1YLW5" FT /protein_id="ABM05861.1" FT /translation="VTFCCSNCSGTIAFESIECFSAAPQLEKYILAKVPTSHVQVVNLF FT LESRVPGITGFNTEYWEDDFETSGLDTLVETATISDNFPKYRVTDKPRLQNVVRSVIGR FT PKRNSLKCNLVTFESRNFNADRGCDVSSDPIAATELASLFFDTWVDGSKLAECVGDTIS FT QNAVAASSWLDSRSSMAKQSLWARLRSFIYDLSAMTRYKLMVKSDAKPKLDSTPLQQYV FT TGQNIVYHDRAITAMFSHIFTQAVERLKYVLHTKVLAYHGMSTEDFSREVGDRLGDVSG FT YYVYELDISKYDKSQGACMKDVERRILIGLGVSESVVDAFFCGEYDSVVTMGKNELVLS FT VGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELLINDRILE FT ESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDLLFEVFTS FT FVDLTRGYGDENAVQQLVAMDAQRYGPNPYAYAAFCLVHVLAANFVQFKRLFYDADGIF FT GKNSKSKATR" FT CDS 3448..3627 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF2" FT /db_xref="GOA:A1YLW6" FT /db_xref="UniProtKB/TrEMBL:A1YLW6" FT /protein_id="ABM05862.1" FT /translation="MDLRQFSHELLYTVSLFVLVVLCFAVYFIVRAIRHCCTKIEDKPV FT EGPTNSSFRYVAQP" FT CDS 3633..5264 FT /codon_start=1 FT /product="heat shock protein 70-like protein" FT /note="HSP70h; ORF3" FT /db_xref="GOA:A1YLW7" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:A1YLW7" FT /protein_id="ABM05863.1" FT /translation="MEVGLDFGTTFSTSCFSIPTRDDSGCVSLVNSPFVPSQIFIGTDM FT TYSIGHRAYSDFVAGKRGGLYINPKRWVGVDSFNFQAVKRKLNPEYEVKLNNGEISIGS FT VGNVNAPLMRVVDLVFLFVKGILLETEEAVGRAVTGVVCTVPAEYNSFKRSFLGVALEG FT LGKPLRALINEPTSAALYGAVRGGSLRETYAVFDLGGGTLDISFISRFNDVVSVLFSKG FT DNFLGGRDIDRAIVQYLRKEKRIKGDIDAGILSVMIADLKEKICTNGGTQQTQVRTSSG FT LETLSMSVGELNAVSEPFIDRAVKIFVEGAEELKRCPIVCVLTGGSAALPLVRPKLESL FT PYVSGVAYDSQTFRLSVAIGAKIYGDILTGQSDLRLIDTVSQTLSDELSGFTELVIFPK FT GHPIPSVYETSFQISGSTMEYGIFEGESNRTWLNEIAFKGTDYRPSNERKNDKVKYEIS FT VDGKLRLSVDGGELKNTRLPAPVSDSAHSYRYMSSMKKYVIQLENNYVDMFSELHGDKI FT SIDDVYNDTGAYFDKNILVNFLKLSK" FT CDS 5261..>5715 FT /codon_start=1 FT /product="heat shock protein 90-like protein" FT /note="HSP90h; ORF4" FT /db_xref="UniProtKB/TrEMBL:A1YLW8" FT /protein_id="ABM05864.1" FT /translation="MNPLIWFTGTTDYMSVLKPLYEDFKAEGGRRVVNFIEVIDRENKP FT YIIRGVSPSDENFELIAWAAAVGAFNNSIYAFDTILQMMRNWKAYATSGSLKLNTPITK FT KKDKHYILTPEQRAATRALPNSTNEASAQLFLNLGVFLKRVPTDDDVS" XX SQ Sequence 5715 BP; 1493 A; 1059 C; 1572 G; 1591 T; 0 other; gggacgacta tcttcgattt ggagtacgtc ttcttggtat ctacaggcac tttcgttcca 60 gggagaaacc tcgaggccgt gttgtcgagg caagatgctg tgctagtttg tgatgattta 120 ctagtgtttc atgatgcgat gaatttgcgt ggatgtgtcg gattggctaa gagggctttg 180 gtcggtgaat acacgaagag tgtgaagttg tctgcggtga attcaccacc tggtggaggc 240 aagacaacgc gtcttgttga cgagtatttt ggaaggaaga agcgtgcgaa gattgccaca 300 gcgaacacag gaagcgctgc ggatattaac tcggctattc aagccagaga agggaagaag 360 gaacccgact tggtagcgaa gaccgcgaac tcgtggattg ttaattctcg gcctcgtcca 420 aactcgcatg ttgggcttat tgatgaagtg tacatgctgc acaagggaat gtttcagtta 480 acagtggcag cgatgggtgt gaaagaggtt atagcgtacg gagataagaa tcagatcccg 540 ttcatcaaca gggaaaagac gtttgtcacg cctaatgaag ctgtagaatt cccggaggag 600 ctgattgagt atacagacat ttcataccgg tgccctgcag atgtatgtta tgtattatcg 660 tcgatgaccg atatgcgagg agctaaattg tacccgaatg gtgtgtttcc taacggggac 720 actcgacctt tacgctcttt cgagaaggtg cccatcgcaa ctccagagga cgctttgctg 780 tatgaagcgg atgtttacct gacaatgact cagaatgaaa aagcagaaat gcagagggtt 840 gttgcgaaga tggaaatagc ggctgggaaa aagaggccag atgtgttaac aacgcatgag 900 gcgcaaggca agacgtatgg tgatgttgtt ttggtaagat tgaagaaggc ggatgatccg 960 atcttcacgc ggaagcctca tatcgtagtt gctttgtcaa ggcatactca cagcatgaaa 1020 tacgcggtgc tgagctctaa gatgtctgat actatttcga agctgatcga tggtacgtac 1080 gctggaaaag tgagtgacgt tttgttgcag caactgcagc ggaacgatcg ctttcgaatc 1140 gattgagtgt ttctcggctg ctccgcagct ggagaagtat attttggcga aggtgcccac 1200 atcccacgtt caagtggtga atcttttctt ggagagcaga gtgcctggta tcacgggttt 1260 caacacggaa tattgggaag atgattttga gacgtctggt cttgatacgt tggtcgaaac 1320 ggccacgata agtgacaact tcccgaagta cagggtaacg gacaagcctc ggttgcagaa 1380 tgtggtaagg tcagtgattg gacggcccaa gcggaacagt ttgaaatgta acctcgtcac 1440 gtttgagagc agaaacttca atgcagacag gggatgtgat gtttcgtccg accctatcgc 1500 tgctacagag cttgccagct tgttttttga cacctgggta gatgggagta agctcgcaga 1560 gtgcgtcggg gacacaatat cccaaaatgc agtggcggcg tcgtcgtggc tcgatagcag 1620 gtcttctatg gctaagcagt cgttgtgggc tcgtttgcgg tcttttatct atgatctgtc 1680 ggcaatgact cgttataagc ttatggttaa gtcagacgcc aaaccgaagt tggattccac 1740 gcctttacag cagtacgtta cggggcaaaa cattgtgtac cacgacagag ctataactgc 1800 gatgttttca cacatcttta cgcaagcggt cgagaggtta aaatatgtgc tgcatacgaa 1860 agtcttagca taccacggta tgtcaactga agacttcagt cgcgaggttg gtgatagact 1920 tggggatgtg tcgggttatt atgtttacga gctggatatt tcgaaatatg acaagtctca 1980 aggcgcgtgc atgaaggacg tcgaaaggcg aattttaatc ggtctaggtg tgtcggaatc 2040 tgtcgtagat gctttcttct gtggagagta tgattccgtg gtcacgatgg ggaagaacga 2100 gcttgttctg tcggtagggg cgcagcggag atctggaggc gcaaatacgt ggttagggaa 2160 cactttggtt cttatgactt tgttggcgat ctctttgaaa ggttcggaac cgtcattggt 2220 tgttgtttgt ggcgatgact ctttgatttt ttcgaagaac gagctgctga ttaatgacag 2280 gattcttgaa gagagttttg ggttcgacct caagttaacg tgccagtgtg ccccttattt 2340 ttgttcgaaa tatttggtga ggacaccgga ccattgttat tttttaccgg acccgttcaa 2400 gttgtttttg aagctaagcc tggaaagaga gccgaatgaa gatttgctgt tcgaagtgtt 2460 tacctcgttt gttgatttga cgcgaggtta tggggatgag aacgctgtac agcagcttgt 2520 tgcgatggat gcacagagat atggtcctaa tccgtacgcg tacgcagcgt tttgtttagt 2580 gcacgtactg gcagcgaatt ttgtgcaatt caagaggtta ttctatgatg ctgatgggat 2640 atttgggaag aactcaaaga gtaaggctac tcgttgagct ctatatataa tggtctcgta 2700 taccagggaa tacggctcaa ttctcgacca cccgtaattg gggagaaaag atcagggatc 2760 gggtgtctac tatcctgaag tagaggtaac ggctatttga gctaggtcgt tacattgtaa 2820 tatagtgtgc agtttttcta aggtttagtt catagtttta gttggttttt attttgaata 2880 gtgtcgcgtc ttttattctt tcttttcata gtttattttt gtagagggag gtacggtaag 2940 atcgcggcgt acaccacgta gccgagccgt atgcctagca ggcttacgtc gcgagtgtga 3000 ggggaactag ccgtgttgtg ctgtgatggc actagggggg taggcatgcg gcttggcttc 3060 tttgggaggg tctggtaaga attttatagt gtatagtgcc gtttatagtg taaatacatg 3120 ttaaggtgtt ttagagaata ttttaagatc accccggtct tcgatgacca cgcgttgaag 3180 agtcctagat aacagcgcgt aggaggtagc tgcaatagtt acattacaaa tgcagagccg 3240 aagcgcgttg gcgttgaggt tttcttgtct atgctttata gtctaaagat gccatcacga 3300 atggtatgac gaggtgaagg caatgaatgc cggtcatctc tattccgcgt taatgttcaa 3360 gttttatggt gaagtggtgt cgccaatttt gtaatatacg atcagtacag cgatgtgttt 3420 agggtttgaa taatatatat tttctttatg gacttgcggc agttttccca cgaacttctg 3480 tatactgttt cactttttgt acttgtagtg ttgtgcttcg ccgtgtattt tattgtgaga 3540 gctatacgac attgttgcac gaagatcgag gataaaccgg tagaaggacc aacgaattca 3600 tcgttcaggt acgtagctca accgtagata ggatggaagt gggactcgat ttcggtacta 3660 cttttagcac gtcatgtttt tcaatcccca cgcgagatga ttcggggtgc gtatcgttgg 3720 tgaattctcc gttcgtacca tcacagattt ttataggaac cgacatgacg tacagcatcg 3780 gacatagagc ttattccgat tttgtggccg gcaaacgtgg tggactttac atcaatccga 3840 aacgttgggt aggtgtcgat agctttaact tccaggccgt taagcgaaag ttgaatccag 3900 aatatgaagt caagttaaat aatggcgaga tttctatagg cagcgtaggc aacgtgaacg 3960 ctccactgat gagagttgta gacttggttt tccttttcgt aaaaggcatt ttgctagaaa 4020 cagaggaggc cgtaggaaga gcggtaacag gcgttgtctg tactgtgccg gcggagtata 4080 actcgttcaa gcgaagcttt ttaggtgttg ctttggaagg gttgggtaag ccgttgagag 4140 ctctcataaa cgaaccaacg tcggcggctt tgtacggagc tgttagggga ggttcgctgc 4200 gcgagactta cgccgtcttc gacttgggtg gagggacatt agatatatcg ttcatatcaa 4260 ggtttaacga cgtcgtgagc gtgttatttt cgaaaggcga caactttttg ggtggtcgtg 4320 acattgacag agcgatagta caatacttgc gtaaagagaa acgaataaaa ggtgacatag 4380 atgcaggaat attatcagtt atgatagcgg atctaaaaga aaaaatttgt actaatggtg 4440 gtacgcaaca gacgcaggtg aggacttcga gtggtctaga aacgctatca atgtccgtcg 4500 gcgaactgaa cgccgtctct gaaccattta tagacagagc ggtcaagatc ttcgtagaag 4560 gtgctgagga acttaaacgt tgtccgattg tctgtgttct gactggcgga tcggctgcac 4620 tgccgttagt acgaccaaag cttgaaagtc taccgtacgt cagcggagta gcttacgata 4680 gtcagacgtt cagattatcg gtagctatag gtgcaaaaat ttatggtgat attctcacag 4740 ggcagagtga cttgcgactc attgacactg tatcacagac attgtccgac gagttgtcgg 4800 gattcacaga gttagttata tttcccaaag gtcacccgat accgtcggta tacgaaacga 4860 gctttcaaat atcgggaagc actatggagt acggaatttt tgaaggcgag tctaatcgca 4920 cctggttgaa cgagatcgct tttaagggga cagactacag accgtctaac gaaaggaaga 4980 atgataaagt taaatacgag atatcagtgg acggaaaatt gagactgagc gtcgatggtg 5040 gagaactgaa gaacacccgt ttaccggcac cagtaagcga ttcagcacac tcgtatcgtt 5100 atatgtcgag tatgaaaaaa tacgtaattc aacttgagaa taattacgtc gatatgttct 5160 ctgagttaca tggcgataaa atatcgatcg acgacgtcta taatgacaca ggtgcgtatt 5220 tcgacaagaa tatattagtg aactttttaa aattatccaa atgaacccgt tgatttggtt 5280 cacagggacg actgattata tgtcagtgct taagccacta tacgaagact tcaaggctga 5340 aggcggtcgg cgtgtcgtga atttcatcga ggttatagat cgagagaaca agccgtacat 5400 aatccggggg gtgtcaccgt cagatgagaa cttcgaattg atcgcgtggg cggcggctgt 5460 tggtgctttc aataattcga tctacgcatt cgatacaatc ctccaaatga tgcgtaattg 5520 gaaggcgtat gcgacttcag ggtcgttaaa gctaaatacg cccataacta agaaaaagga 5580 taagcattac attttgacgc cggaacagag ggcagcgacg agagctctgc caaatagtac 5640 aaatgaagct tccgcgcagt tgttcttgaa cctaggcgtt tttctcaaac gcgtgccgac 5700 cgatgatgac gtatc 5715 //