ID EF091714; SV 2; linear; genomic RNA; STD; VRL; 4287 BP. XX AC EF091714; XX DT 10-FEB-2007 (Rel. 90, Created) DT 15-JUN-2023 (Rel. 144, Last updated, Version 3) XX DE Ryegrass mottle virus isolate MAFF. No. 307043 from Japan, complete genome. XX KW . XX OS Ryegrass mottle virus OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Sobelivirales; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4287 RX DOI; 10.1007/s11262-007-0087-y. RX PUBMED; 17356908. RA Balke I., Resevica G., Zeltins A.; RT "The ryegrass mottle virus genome codes for a sobemovirus 3C-like serine RT protease and RNA-dependent RNA polymerase translated via -1 ribosomal RT frameshifting"; RL Virus Genes 35(2):395-398(2007). XX RN [2] RP 1-4287 RA Balke I., Resevica G., Zeltins A.; RT ; RL Submitted (28-OCT-2006) to the INSDC. RL Protein Engineering, Latvian Biomedical Research and Study Center, 1, RL Ratsupites, Riga LV1067, Latvia XX DR MD5; 038741f425567f91dfa684e5649db6c6. DR EuropePMC; PMC3791421; 23830075. DR GrainGenes; EF091714; EF091714. XX CC On Jun 2, 2023 this sequence version replaced EF091714.1. XX FH Key Location/Qualifiers FH FT source 1..4287 FT /organism="Ryegrass mottle virus" FT /lab_host="Avena sativa cv. Jaak" FT /isolate="MAFF. No. 307043" FT /mol_type="genomic RNA" FT /country="Japan" FT /isolation_source="leaves" FT /db_xref="taxon:119910" FT 5'UTR 1..117 FT CDS 118..519 FT /codon_start=1 FT /product="P1" FT /db_xref="UniProtKB/TrEMBL:Q9E965" FT /protein_id="ABN09949.1" FT /translation="MPSVVIEVCSYDEETGDCELESTSKIFTSNFDGTYVLYTHSSGPK FT YAGSTVTLVCPHCGVSEQATFPTRGLSSNWGHHGPHDLRLDCKARHWHGTCEVIPSSEQ FT ESRVASDGVFEPGLTHITTTRGQSWTRHH" FT CDS join(661..1866,1866..3503) FT /codon_start=1 FT /ribosomal_slippage FT /product="polyprotein" FT /note="contains protease, VPg and RNA-dependent RNA FT polymerase; due to ribosomal frameshift in ORF2a RdRP is FT fused to polymerase and VPg; ORF2a/ORF2b" FT /db_xref="GOA:A0MCW0" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="PDB:6FEZ" FT /db_xref="PDB:6FF0" FT /db_xref="UniProtKB/TrEMBL:A0MCW0" FT /protein_id="ABN09950.1" FT /translation="MYGSIVSMVVQAALAFLLSKDPESRTAVRGLLASLTGTALILGWQ FT LLCVLRAWLATSLEKEPEAPEDSWIDLCGPPRFDPSKGVYGEVLIDGKQHRVVIQPDFW FT PLLRSAINIDRDEAAVANSIVSSVAPGKEPGSLVCIQAKDGKVIGMGARVHCGPATVLV FT TAGHVLKKGMIADLYLAKYSVSSKEGKRVLMDPTWKIEYGSLNKEADVISVQVPAAVWS FT RLGVTAARVRKPTVKVPVLAYGGEASGLLQSSQGFATPDGNMSVAHSCSTRPGWSGTPL FT YAGSDIVAIHRRWEDIGVKNLATNLSIFHANCESSENGEQGAREIDAEEWISREVTPTD FT VYIAGRGKYRVAGDEFSHSSYDPLAFSKYKKERGEMTWADMVEGDLDWDAREESTGNDI FT PLNLPAGGEQVLVAVRDMSGIVWSDGEILTTTGMPLIDCGRSRVKFRETARTSTNELCR FT NAEQHFGDLADLSWPERGSKAERVSLLFQAGRFRPTEAPDNLDSACRELEREYPRSKQR FT ACLWGETWNSESLKEKIQEIAQRDIKRDSSPGVPLSLIGTTNGAVLDSSMTLVVEAVWA FT RLEALSRIELSPDVTPPELIQLGLCDPVRLFIKQEPHPLRKVRTGRLRLISSVSLLDQL FT VERVLFGFQNNLEISRWKQCPSKPGMGLTSKEQSDALWDELKFKSTLAPAAEADISGFD FT WSVQHWELMADVEMRIRLGDFSNLAARAARNRFTCLSNSVFQLSDGTLISQGLPGLMKS FT GSYCTSSSNSRIRCLMAKIIGSRWCIAMGDDSVEGWVDNAVEKYHALGHECKEYSACAR FT TYVSGSGEQTLQTVNFCSHELSEGKCHLTTWSKTLFRFFHSTAPCIRSLEMELAGSPQW FT PKIYRYLRRVGLAPDKDGKEEGQIGQPSNRFEGEIPEETTEKQRPTTHQTGYTGFSAGR FT DGDPDYLSGTPSCNSVW" FT CDS 661..2322 FT /codon_start=1 FT /product="polyprotein" FT /note="contains protease and VPg; ORF2a" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:A3EXL3" FT /protein_id="ABN09951.1" FT /translation="MYGSIVSMVVQAALAFLLSKDPESRTAVRGLLASLTGTALILGWQ FT LLCVLRAWLATSLEKEPEAPEDSWIDLCGPPRFDPSKGVYGEVLIDGKQHRVVIQPDFW FT PLLRSAINIDRDEAAVANSIVSSVAPGKEPGSLVCIQAKDGKVIGMGARVHCGPATVLV FT TAGHVLKKGMIADLYLAKYSVSSKEGKRVLMDPTWKIEYGSLNKEADVISVQVPAAVWS FT RLGVTAARVRKPTVKVPVLAYGGEASGLLQSSQGFATPDGNMSVAHSCSTRPGWSGTPL FT YAGSDIVAIHRRWEDIGVKNLATNLSIFHANCESSENGEQGAREIDAEEWISREVTPTD FT VYIAGRGKYRVAGDEFSHSSYDPLAFSKYKKERGEMTWADMVEGDLDWDAREESTGNDI FT PLNCQQAASKCSSPCVTCPESSGVTEKSSPQQACPSLTVEDRVSNLEKLLERVLTSSAE FT TQSNISVISQTLVGLKEARKQKELVCSSRQADSAPQKPPTTSTARAENLSENTPGPSSE FT PAFGGKLGTQKASKKRSKKSRKGTSSGTPVQGSPSA" FT CDS 3322..4029 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q9E962" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:2IZW" FT /db_xref="UniProtKB/TrEMBL:Q9E962" FT /protein_id="ABN09952.1" FT /translation="MARKKGKSASQVIVLKEKSRKKRQKSRGQQPTRQVTPVSAPAAMG FT TQITYRGPQVVTQYGDITPAKNSGSLVRVTSSATAGTEVSGTVLFNVRNATELPWLSGQ FT GSRYSKYRVRYAHFTWEPIVGSNTNGEVAMAMLYDVADVTSITIERLMQTRGGTWGPIW FT SPTRKRLSYDPEHASLPWYLSGVSSGAAAGNIQTPFQIAWAAQSSLVSTTLGRIMAEYL FT VELTDPVDVTINQ" FT gene 3322..4029 FT /gene="CP" FT 3'UTR 4030..4287 XX SQ Sequence 4287 BP; 1042 A; 1084 C; 1211 G; 950 T; 0 other; acctctctat ggcagtcgac aaatagagtt attaaattaa ctctattgaa cccgttatcc 60 ggtgatatag gacatctgtg aactaacatc acaataatca gttagccccc tcgatttatg 120 ccttcagtgg ttatcgaggt ttgctcatac gacgaggaga caggagattg tgaacttgag 180 agtacgtcga agatattcac cagtaacttc gacgggactt acgtcctata tactcacagt 240 tccgggccga aatacgccgg atcaactgtc acactcgtct gccctcactg cggggtgagt 300 gaacaagcga cgttcccgac cagaggcctt tcaagcaact ggggtcacca cgggccgcac 360 gacttacgac ttgattgtaa ggcgcggcac tggcacggaa cgtgcgaggt cattccctcc 420 tctgagcaag agtcgcgtgt agcgtctgac ggggttttcg aaccaggtct aacgcacatc 480 accacgactc gagggcagtc ttggactaga catcattagt ccctcccagt tctcgctggg 540 agtcccgcag cctggctacg ggaaatatcg gtggggttga tcagacctac acctcttcga 600 gaaaagcgct cttcgagtac tccctcggca gactattctg ttgcgtctcc catagtgaag 660 atgtacgggt caatagtaag catggtggtt caggcggcgc tcgctttcct actgtccaag 720 gacccagagt ccaggactgc ggtgagaggg ctgctagcat cactaacggg gacggctctg 780 atcctggggt ggcaactgct gtgcgtcttg cgcgcttggc tagcaacctc tctggaaaag 840 gaaccggaag ctccggaaga ctcctggatt gatctgtgtg gtccgccacg ctttgatcca 900 tcgaaaggag tttatggaga ggtgctcatc gatgggaagc agcatcgggt tgtgatccaa 960 cccgatttct ggcctctttt acggtctgcg ataaatatag atcgtgatga ggctgctgtg 1020 gctaattcca tcgtctcttc ggtggcaccg gggaaagagc caggctctct agtttgcatc 1080 caagcaaagg atggcaaagt gattgggatg ggggctcgag tccactgcgg acccgccact 1140 gtcctcgtca ccgccggtca tgttctgaag aagggcatga ttgcagactt atacctggcg 1200 aagtactctg tgtcgagtaa agagggaaag cgtgtcctga tggacccgac ctggaagatt 1260 gaatacggct ccctgaacaa ggaggctgat gtgatatcgg tacaggtccc cgcggctgtg 1320 tggtctcgcc ttggcgtgac cgccgcccgc gtgcggaagc ctactgttaa agtaccagtc 1380 ctcgcctatg gtggggaggc ttccgggctc ctacaatcct cgcaaggttt tgcgactcca 1440 gatggcaata tgtctgtggc ccattcatgc tcaacccgtc cagggtggag cgggacaccc 1500 ctgtacgcag ggtcagacat tgttgccatt caccgaagat gggaggatat aggcgtcaag 1560 aatttggcga cgaacctctc cattttccat gcaaactgtg aatccagtga aaacggagag 1620 cagggagcgc gcgagatcga cgctgaggaa tggatatctc gagaggtaac tccgacggac 1680 gtgtacattg caggccgagg gaaatacaga gttgctggag atgaattctc ccactcaagt 1740 tatgatcctc tggctttctc taagtacaag aaggagagag gtgagatgac gtgggctgat 1800 atggtggaag gcgatcttga ttgggacgcc cgtgaagaat ccacaggaaa tgatattcct 1860 ttaaactgcc agcaggcggc gagcaagtgc tcgtcgccgt gcgtgacatg tccggaatcg 1920 tctggagtga cggagaaatc ctcaccacaa caggcatgcc cctcattgac tgtggaagat 1980 cgcgtgtcaa atttagagaa actgctagaa cgagtactaa cgagctctgc cgaaacgcag 2040 agcaacattt cggtgatctc gcagacctta gttggcctga aagaggctcg aaagcagaaa 2100 gagttagttt gctcttccag gcaggcagat tccgccccac agaagccccc gacaacctcg 2160 acagcgcgtg ccgagaactt gagcgagaat acccccggtc caagcagcga gcctgccttt 2220 ggggggaaac ttggaactca gaaagcctca aagaaaagat ccaagaaatc gcgcaaaggg 2280 acatcaagcg ggactccagt ccaggggtcc ccctcagctt gattggaact acaaatgggg 2340 cagtcctgga ctcctccatg accttggttg tggaggctgt ctgggcgcga ctcgaggcgc 2400 tttcccgaat agaactaagc cccgatgtga ctcctcctga gttgatacaa ctaggtcttt 2460 gcgacccagt gcgtctcttc ataaaacagg agccccatcc actcaggaaa gttcggactg 2520 gcaggttgag gctgatttca tcggtatccc tgttggacca actggttgag agggttcttt 2580 tcggttttca gaataacctc gagataagcc gatggaagca gtgtccatcg aaacccggaa 2640 tgggtctcac ttctaaggag caatccgatg cgttgtggga cgagctgaag ttcaagtcca 2700 ccctagcccc cgcggctgag gcggacatat cgggattcga ttggtcagtg caacattggg 2760 agctaatggc ggatgtcgaa atgagaattc gactcggaga cttcagcaac cttgctgcaa 2820 gggctgctag gaacaggttt acttgtttgt cgaactcggt tttccaactg agtgatggca 2880 ccctgatttc tcagggacta ccaggcctaa tgaagtccgg gtcttattgc acttcgagct 2940 caaattcacg gataagatgc ctaatggcga agatcatcgg ctcacgatgg tgtatagcca 3000 tgggtgatga ttccgtggag ggttgggttg acaatgctgt agaaaagtat catgcacttg 3060 gtcatgagtg taaagaatac tcagcatgcg cccggacata cgtgagcggg agcggagaac 3120 aaacccttca aacggttaat ttctgctcgc acgagttgtc cgagggtaag tgtcatctta 3180 cgacctggag caaaacgctt ttccgattct tccatagtac ggctccgtgc attaggagtc 3240 tggaaatgga attagcgggc agcccccagt ggcccaaaat ctatcggtac ctgcgtcggg 3300 tgggcttagc gcccgacaaa gatggcaagg aagaagggca aatcggccag ccaagtaatc 3360 gttttgaagg agaaatcccg gaagaaacga cagaaaagca gaggccaaca acccaccaga 3420 caggttacac cggtttcagc gccggccgcg atggggaccc agattactta tcggggaccc 3480 caagttgtaa ctcagtatgg tgacatcacc cccgccaaga actctggctc tttagtacgc 3540 gtcacatcca gtgccaccgc cggcacggag gtgagcggca cggtgctctt taacgtacgc 3600 aatgcgactg agctaccgtg gctatctggg caagggtccc gctattcgaa gtacagggtg 3660 aggtatgcac acttcacctg ggaaccaatt gtgggatcca acaccaatgg cgaggtagcc 3720 atggctatgc tgtatgatgt tgctgatgtg actagcatca ctatcgagcg actgatgcag 3780 acgagaggtg gaacttgggg acctatctgg tctccgacta ggaagcggct cagttatgac 3840 cctgagcacg cttctctacc ttggtaccta agtggagtct cctcaggcgc cgcggcaggt 3900 aatatccaga ctcccttcca gatagcttgg gctgcccaat cttcattggt tagcacaacg 3960 ctaggcagaa taatggctga gtacttggtg gagttgaccg atccggttga tgtcacaatc 4020 aaccagtgag acctgagctc aaggttaacg agcgacccct tgggctgggg gtatataaat 4080 acgcaatgcc acttcggtga caggcgccgg caggctccgc ctacatgggg gttaatccag 4140 agtccctgaa gactataaac tcgaagtccc agatgactct aaactcgtga actgtcggca 4200 cacctagcgt aggggcccgg gggttttcaa acacaaacta cgctgcgact gcctagggta 4260 ggatcattcc acgctagggg ttgtagc 4287 //