ID EF088197; SV 1; circular; genomic DNA; STD; VRL; 2619 BP. XX AC EF088197; XX DT 10-JAN-2007 (Rel. 90, Created) DT 03-APR-2008 (Rel. 95, Last updated, Version 2) XX DE Tomato mosaic Havana virus segment A, complete sequence. XX KW . XX OS Tomato mosaic Havana virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2619 RX DOI; 10.1111/j.1365-3059.2007.01762.x. RX AGRICOLA; IND44032860. RA Monger W.A., Mumford R.A., Garcia E.A., Boa E.; RT "Occurrence of Tomato mosaic Havana virus in Nicaragua"; RL Plant Pathol. 57(2):387-387(2008). XX RN [2] RP 1-2619 RA Monger W.A., Mumford R.; RT ; RL Submitted (25-OCT-2006) to the INSDC. RL PLHB, Central Science Laboratories, Sand Hutton, York YO41 1LZ, UK XX DR MD5; 307ec3826172e597aaed892cd903222a. XX FH Key Location/Qualifiers FH FT source 1..2619 FT /organism="Tomato mosaic Havana virus" FT /segment="A" FT /mol_type="genomic DNA" FT /country="Nicaragua" FT /db_xref="taxon:223356" FT gene 336..1091 FT /gene="AV1" FT CDS 336..1091 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:A1YKY8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A1YKY8" FT /protein_id="ABM45866.1" FT /translation="MPKRDLPWRSMAVTSKVSRNANCSPRSGIGPKYNKAAEWVNRPMY FT RKPRIYRTLRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT gene complement(1088..1486) FT /gene="AC3" FT CDS complement(1088..1486) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:A1YKY9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A1YKY9" FT /protein_id="ABM45867.1" FT /translation="MDSRTGDIITARRAENGVFIWEIENPLYFKINRVEEPLYTRSKVY FT HIQIRFNHNLRRALHLHKAFLNFQVWTTSMTASGSTYLARFRHFVIVYLDQLGVISLNN FT VIRAVRFATDRHYVHDVLENHSIKFKFY" FT gene complement(1233..1622) FT /gene="AC2" FT CDS complement(1233..1622) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:A1YKZ0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A1YKZ0" FT /protein_id="ABM45868.1" FT /translation="MRSSSPSYPPSIKIAHRQAKKKTIRRRRIDLECGCSIYFHIDCAG FT HGFTHRGYHHCTSGREWRVYLGDRKSPLFQDKQSRGTTIHQEQGVPHTNQVQPQPEESV FT ASPQSLPELPSVDDIDDSFWVNLFS" FT gene complement(1534..2619) FT /gene="AC1" FT CDS complement(1534..2619) FT /codon_start=1 FT /gene="AC1" FT /product="replication protein" FT /db_xref="GOA:A1YKZ1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A1YKZ1" FT /protein_id="ABM45869.1" FT /translation="MPPPKKFRVNSKNYFLTYPQCSITKEEALSQIKNLNTPVNKKFIK FT ICRELHENGEPHLHVLLQFEAKYQCTNNRFFDLGSPSRSAHFHPNIQGAKSSSDVKTYI FT DKDGDVLEWGEFQIDGRSARGGCQSANDTYAKALNASCAEEALQIIKEQQPQHFFLHHH FT NLVANAHRIFQKPPEPWVPPFRLSSFTKVPEEMQHWADDYFGRGSAARPDRPISIIVEG FT DSRTGKTMWARALGPHNYLMGHLDFNSRVYSNTVEYNVIDDIAPHYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPAIVLCNPGEGSSYKDFLNREENTALRNWTIKNALFVTLI FT SALYQDSSQAGKEEDDQEKAD" FT gene complement(2205..2462) FT /gene="AC4" FT CDS complement(2205..2462) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A1YKZ2" FT /protein_id="ABM45870.1" FT /translation="MGSLISMCFYSSKPNTNARTTDSSTWAPHHGQHISIRTYRELSRA FT PMSRHTSTRTEMFWSGANSRSTVDLPEEAASRPTIHMQRH" XX SQ Sequence 2619 BP; 659 A; 571 C; 606 G; 783 T; 0 other; atttgtaatt tggagctgta caccaattga gctctctcaa acttgctgat tcaattggtg 60 tattggggta acttatatac tagaaccctc tatagaacta ttaatcttgt tcctacacgt 120 ggcggccatc ctataatatt acctgatgac cgcgcgccct ttcctctttc cgtacaattg 180 ggagtgcatg ctttttcttt agttttctct ttaatttaaa tttgaccaat catgttacgt 240 ctgacgagct tatgtacatg caacaacttg ggcctcaagt tgttgggcct gggttataaa 300 ttaaagagat attggcccaa tctagttaac ccaaaatgcc taagcgtgat ttgccatggc 360 gttctatggc ggtaacctca aaggttagcc gcaacgctaa ttgttctcct cgttcaggaa 420 ttgggccaaa atacaacaag gccgctgaat gggtcaacag gcccatgtac aggaagccca 480 ggatctatcg gactctgagg agtcctgatg tgcccagagg atgtgaaggc ccttgtaaag 540 tccagtccta cgaacagcgt catgacatct cacacgtggg caaggtcatg tgtatatctg 600 acgtgacacg tggtaatggt attactcatc gtgtgggtaa gcgtttctgt gtgaagtccg 660 tgtacatact agggaagatc tggatggatg agaatatcaa gctcaagaac cacacgaaca 720 gtgtcatgtt ttggctggtc agagatagaa ggccgtatgg gactcctatg gattttgggc 780 aggtgttcaa catgttcgac aacgaaccca gtacagccac tgtgaaaaat gatcttcgtg 840 atcgttacca ggtcatgcac aagttctatg gcaaggtaac cggtggtcag tatgccagca 900 atgaacaggc aatcgtgaag aggttctgga aggtgaacaa ccacgtcgtc tacaatcacc 960 aagaggctgg caaatacgag aatcatactg agaacgctct actattgtac atggcatgta 1020 ctcatgcctc taaccctgta tatgcaactt tgaagatccg gatctatttt tatgattcga 1080 tcatgaatta ataaaatttg aattttattg aatgattttc taatacatcg tgtacataat 1140 gtctatctgt tgcaaaacga acagctctaa ttacattgtt caaggaaatt acacctaatt 1200 gatctaagta cacgataaca aaatgtctaa acctagctaa ataagttgac ccagaagctg 1260 tcatcgatgt cgtccacact tggaagttca ggaaggcttt gtggagatgc aacgctctcc 1320 tcaggttgtg gttgaacctg atttgtatgt ggtacacctt gctcctggtg tatagtggtt 1380 cctctactct gtttatcttg aaatagaggg gattttctat ctcccagata aacacgccat 1440 tctctgcccg acgtgcagtg atgatatccc ctgtgcgtga atccatgccc agcgcagtct 1500 atgtggaagt atatggagca accgcactcc agatcaatcc gccttctcct gatcgtcttc 1560 ttctttgcct gcctgtgagc tatcttgata gagggcggat atgagggtga cgaagagcgc 1620 attcttgatg gtccagttcc tgagtgctgt gttttcctct ctgttcagga aatctttata 1680 gctggaaccc tcacctggat tgcaaagcac gattgctggg atcccacctt taatttgaac 1740 tggcttgccg tacttgcaat ttgactgcca gtctttctgg gcccccagca attctttcca 1800 gtgctttagc tttagatagt gcggtgcgat gtcatcaatg acgttatact ccactgtatt 1860 tgaatagact cgagaattga aatccaaatg gcccatgaga taattgtgtg gacccagtgc 1920 tcgtgcccac atcgtcttgc ccgtcctcga gtctccttca actatgatac taataggtct 1980 atctggccgc gcagcggaac ccctcccaaa ataatcatct gcccaatgct gcatttcttc 2040 cgggactttt gtgaaagaag acagacgaaa tggagggacc catggttcag ggggtttttg 2100 aaatatccta tgtgcatttg cgaccaggtt atgatgatgg aggaagaaat gctgaggctg 2160 ctgttctttt attatttgta gagcctcttc tgcacatgag gcatttaatg cctttgcata 2220 tgtatcgttg gccgactggc agcctcctct ggcagatcga ccgtcgatct ggaattcgcc 2280 ccactccaaa acatctccgt ccttgtcgat gtatgtcttg acatcggagc tcgacttagc 2340 tccctgtatg ttcggatgga aatgtgctga ccgtgatggg gagcccaggt cgaagaatct 2400 gttgttcgtg cattggtatt tggcttcgaa ctgtaaaagc acatggagat gaggctcccc 2460 attctcatga agctctctac agatctttat gaatttcttg ttaactggag tgtttaggtt 2520 ttttatttgg gaaagtgcct cttctttggt aatggagcac tggggataag ttaggaaata 2580 gtttttagag ttaactctaa atttctttgg tggtggcat 2619 //