ID EF063641; SV 1; linear; mRNA; STD; VRL; 6478 BP. XX AC EF063641; XX DT 07-NOV-2006 (Rel. 89, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Tomato apex necrosis virus segment RNA1 polyprotein mRNA, partial cds. XX KW . XX OS Tomato apex necrosis virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Torradovirus. XX RN [1] RP 1-6478 RX DOI; 10.1094/PDIS-91-8-0932. RX AGRICOLA; IND44010590. RA Turina M., Ricker M.D., Lenzi R., Masenga V., Ciuffo M.; RT "A Severe Disease of Tomato in the Culiacan Area (Sinaloa, Mexico) Is RT Caused by a New Picorna-Like Viral Species"; RL Plant Dis. 91(8):932-941(2007). XX RN [2] RP 1-6478 RA Turina M., Ciuffo M.; RT ; RL Submitted (16-OCT-2006) to the INSDC. RL IVV, CNR, Strada delle Cacce 73, Torino, TO 10135, Italy XX DR MD5; 76cdbf36d220bd1400751f5f6aeddaef. DR EuropePMC; PMC2861173; 20229114. DR EuropePMC; PMC2880234; 20376682. XX FH Key Location/Qualifiers FH FT source 1..6478 FT /organism="Tomato apex necrosis virus" FT /segment="RNA1" FT /host="tomato" FT /isolate="VE434" FT /mol_type="mRNA" FT /country="Mexico" FT /db_xref="taxon:410603" FT CDS <1..5833 FT /codon_start=2 FT /product="polyprotein" FT /note="contains RNA dependent RNA polymerase motifs" FT /db_xref="GOA:A0N0G3" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:A0N0G3" FT /protein_id="ABK33525.1" FT /translation="PTSQLMSTILAFGISTLVFIAVPGRPNGLSNPLSKILYSTGSGAQ FT QCNQLFTLYRNMKDCTSQAFSWVLEIIVGTFGFKNPVLSAISATLSTDLFEWMQEVDAV FT CDPATRLENFANKAFPTKLNHLREEALKISAYIATHPVAAFMSHRVSAAIAQLEKVYAE FT ICRHMGVGQYRIEPFMVQWFGSSGCGKSTSMRLFINDVLDRMGEPKLNRLYAVSKRDAY FT WSNYAHQTAILMDDMGALRDGAGQCQDIKDLIDIKSTQPAPLPMAAVEDKGRHFTSKYI FT FATSNLISAPAQCGLTYPDAFERRRDILVECMKEGEFSTEDPTGHLRFNIVESRRPHAI FT THRNLTYSDLLEYVVAKCQVHAEVSKQLFEAESGISPKTAQVQVSADDVIASVDGARLR FT TKQDEPILVPTVVSENDRVIYARELTVEALKYAYQGSLDPEELFPHDHHKQAMYDSLDD FT EHKEIFNKWRVNMLYRGADAEQYRWLVQNIPDDYIMHFKSFIYASTISEKKLAVQTEMR FT TGFAHSCIDADVDTLICIEQMPPFVQFLYTAFVRYWCNKVSKEPKESWVKICYHKIVDY FT IKDTWWSLPYALRLLIKAGLIIMALNGVFGGITAFLACWQSNSFPNASGRGGVTNESNS FT ISSKKNKGNKLRNLLVGQKSQSLAQDWAAEDGFVNQSLKKNLVVLRLGEGVYFRGTYVC FT SGWIMTVAHAFHNARDGTPFTIIHANSRSKVQYNARESRIIEGQDIILLRVGDPDGPKP FT DIRKHFPRRDEVCFTKGSQGLCCRAVASTDPRLGNLEFLKMPVMMSKGYTVKVEYELNS FT SSFKICSQQSYEYHINGENGDCGTLLLLPSVQNKQPVIVGIHCASYDGVAAERGFISSN FT ATAIYREQLEDLPTGPVKAAMVRCDILKSIRSRETQLFEENQVYYLGTVPQELAATVPH FT KTTLRKSQLFEAFGPAETAPSILTVHDKRGDGFDPYVAGVMKYNETACGFDDDIAKLAF FT ENLKCSLLPIMRSQKVPGGRPCERDEDVVLNGIDGCDYYDGMELSTSCGYPFNKMGMGM FT NKREFVQPTGEGERVELKRDTPVFEAWEELDVQIRKGIHVDLVTTQCAKDERLPLEKIY FT GKRKTRLFEILPFHYNMLVRKYFLDFSATLMALHNAIPCKVGIDPTSSEWTLLANGFRA FT VSDVGFSADYSSFDGRAPVFAFQWFCDLVDEYYGSKPGSPDSNARHALLMMASCHYTLC FT EDKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAARAIGVKPSDFNQLF FT IAVYGDDNLVAVPLHLQWYSLPNIAHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFL FT SRGFKRHALGYHMAPLKWVSIIEPMYWIRPAPGCPDTQAMMENVETGIREAFHHGRVAY FT DKLVSDVQTALDERGFRAVIFPSYLEVEQEWIAKVTGDSSALTICEMAKAAISYTPLDA FT GEKVTNFERDLNWFAPNIGFCSARTAARYTWDEGYIVVNCTGAKKSNWVRGPANWKDFE FT GEMWPYTMSAIMDAQKNVLTGGHVATNVVFVCGNGYAVSPICAALMALATRQYCVEDII FT VRLRTIGNVLDLNTYPGGCVQYFLQCVPHGDKVAQSGALLHSSFMHQGFELGNLRIIHG FT DLAKQTAMRMPYVVGPHGGWGNFSTQDLESLLHYLEQGYAELIQKNTKLTLYFKELSME FT NVQQLIDFVKLQGFFPRETTIQKLKNFVDAERLTFKARSFRHVVFKKKLLSSTWKMCGE FT NIAASRSAESLFPGNLSASVLKTLLERHTRSMSCQSMELALKIYLLNFQVITSEILKKF FT EDMYQEKISTTLLIKVFLWLEESYQTEICIDSQVLQRINSQKFRVQEGGFYLHPEGINM FT NAVDAIIFSLWEVYSRDSNSYSVSTPIKLGCFIFLVVLDSQGKEDHPVRRFSTVFLKNC FT ETILTNYKEP" XX SQ Sequence 6478 BP; 1859 A; 1247 C; 1556 G; 1816 T; 0 other; accaacatct cagttgatgt ccacaatatt ggcttttggg atttcaacgt tggtgttcat 60 tgcagtgcct ggtagaccaa atggcttgag caacccattg tccaaaattc tctattcaac 120 agggagtggt gctcagcagt gcaatcaact attcactctt taccgtaata tgaaagattg 180 cacctcccag gctttctcat gggttcttga gataatagtt ggcacctttg gattcaaaaa 240 tcctgtgttg tcagctataa gtgcaacgct gtccactgat ctgtttgagt ggatgcagga 300 ggttgatgca gtgtgtgatc ctgcaacgcg tcttgagaac tttgccaaca aggctttccc 360 taccaaattg aaccatctga gggaagaggc tctcaagatc tcagcttaca ttgcaaccca 420 tccagttgcg gccttcatga gccacagggt tagcgctgcc attgcacagt tagaaaaagt 480 ttatgctgaa atttgcaggc acatgggcgt gggtcagtat cgtattgaac cttttatggt 540 acaatggttt ggatccagtg ggtgtggtaa atctacatcc atgcgcttat ttatcaatga 600 tgtgttggac agaatgggtg agccaaaact taatcggctg tatgcagtaa gcaagagaga 660 tgcatattgg tccaactatg ctcaccaaac tgctatcctg atggacgaca tgggagcatt 720 gcgagatgga gctgggcaat gccaagatat caaagatctg attgatatca aatctacaca 780 accagcaccc ttaccaatgg ctgcagttga ggacaaaggc aggcatttca cctccaagta 840 tatatttgcc acatccaacc tgatctcagc tcctgcccaa tgcggtctta catatccaga 900 tgcttttgag cgaagaaggg atatcctggt ggagtgtatg aaggagggcg agttctctac 960 tgaagaccct acaggacatc ttagatttaa tatagtggag agcaggagac ctcatgctat 1020 cactcacagg aatttgacct atagtgatct tttggagtat gtggtagcca aatgccaggt 1080 acatgcagaa gtatcaaagc aattgtttga agctgaatct ggcataagtc ccaaaacagc 1140 tcaggtccaa gtgtctgcag atgacgtgat agcgtctgtg gatggggcta gactgcgcac 1200 caagcaagat gaaccaatat tggtgcccac tgttgtgagt gaaaatgata gagtgatcta 1260 tgcaagagag ctcacggtag aggcattgaa atatgcatat cagggcagtt tggaccccga 1320 ggaacttttc cctcatgacc atcataagca ggccatgtat gattctcttg atgatgaaca 1380 caaagagatt ttcaacaaat ggagagtcaa catgttgtac agaggagcag atgctgaaca 1440 gtaccgatgg ttggtacaaa acattcctga tgactatata atgcacttca agagtttcat 1500 ttatgcatca actatctctg agaagaaact ggcagtgcag acagagatga ggaccggatt 1560 tgcacattct tgtattgatg cagatgttga caccctcata tgtattgagc agatgccacc 1620 ctttgttcag ttcctatata cagcatttgt gagatactgg tgcaacaaag tatcaaaaga 1680 gccaaaggaa tcatgggtta agatttgcta ccacaaaatc gttgattata tcaaagatac 1740 atggtggagc cttccctatg cactgagatt gctcatcaaa gcaggtctga ttataatggc 1800 tctcaatgga gtttttggag gcatcacagc atttttggca tgctggcaga gtaactcttt 1860 cccaaatgca tcgggtagag gaggtgtgac caatgaatcc aacagtatat ccagtaagaa 1920 gaacaagggc aataagctca gaaatcttct cgttggtcaa aagtctcaat cattggcaca 1980 agactgggct gctgaagatg gatttgtaaa tcagagcctc aagaagaatt tagtagtgtt 2040 aaggcttggc gaaggagtgt actttagagg cacctacgtg tgttctggtt ggataatgac 2100 tgtagctcat gcattccaca atgctcgaga tggtactcca tttacaatca tccatgccaa 2160 ttcgcgatct aaagttcaat acaatgccag ggaatcaagg attattgagg gccaagacat 2220 cattttgttg cgcgttggtg atccagacgg tccaaagcct gacatccgta aacacttccc 2280 aagaagggat gaggtgtgct tcacaaaggg ctcacaagga ttgtgctgta gagctgttgc 2340 gtctacagat ccacgtcttg gcaatttgga gtttctcaag atgccagtga tgatgtcaaa 2400 gggatataca gtcaaagtag aatatgaact gaactcctcc agttttaaga tttgctctca 2460 acaatcttat gaatatcaca taaatgggga gaatggtgac tgcggtacgt tgctactgtt 2520 accgagtgtt cagaacaagc aacccgtgat cgttggtatc cactgtgcat cgtatgatgg 2580 tgtagcagct gaacgtggat ttatttcttc aaatgctaca gctatctaca gggaacaact 2640 agaggatttg ccaactgggc cagtcaaagc agcaatggtg cgctgtgata ttctgaagtc 2700 aattagaagc agagaaacac agctttttga ggaaaaccag gtgtattacc ttggaacagt 2760 tccgcaggag ttggccgcca cagttcccca caaaaccact ctgcggaaaa gccaattgtt 2820 tgaagcattc ggacctgcag aaacagcacc atccattcta acagttcatg acaaaagagg 2880 tgatggtttt gacccctatg tggctggggt aatgaaatac aatgaaacag cctgtggatt 2940 tgatgatgac attgccaagc tagcattcga gaatctcaag tgctcgctgc tacctatcat 3000 gcgtagccaa aaggtccctg ggggacgtcc atgtgaaagg gacgaggatg tagtgctcaa 3060 tggaatagat ggatgtgatt actatgacgg tatggagctg agcacatctt gtggatatcc 3120 cttcaacaag atggggatgg ggatgaacaa gagagaattt gtgcaaccca ctggtgaagg 3180 ggagagagtg gaactcaaaa gagacactcc tgtatttgaa gcatgggaag agctggacgt 3240 gcaaattagg aaaggcatcc atgtggacct ggtcaccacc caatgtgcta aggatgaacg 3300 ccttccactt gagaaaatct atggcaagag aaagaccagg ctctttgaga tacttccttt 3360 ccattataac atgttggtca ggaagtattt tctcgatttc tcagccacat tgatggcctt 3420 gcacaatgcc ataccatgta aagttggtat tgatccaaca agctctgagt ggactttgtt 3480 ggcaaatggg tttagagccg tgtcagacgt gggattttca gctgattatt ccagttttga 3540 tggaagagca cctgtttttg ctttccagtg gttttgtgat ttggtggatg aatactacgg 3600 atcaaagcct ggcagtcctg attccaatgc tcgacatgca cttttaatga tggcatcttg 3660 tcattataca ctatgtgagg ataaagtgtt caggctggtt gggggcatgc catcgggatt 3720 tgcactgaca gtcatcttca attccctcct caatgagttt tatatgcggt atgcctttat 3780 atcattgttg agaagacccc atattgctgc tagggctata ggagtcaagc caagtgattt 3840 caatcagcta ttcatagctg tttacggaga tgacaacctt gttgctgtac cattacatct 3900 ccagtggtat tctctgccaa atatagcaca tgagttagaa ttggtcaatg taatcatcaa 3960 gaatggcctt gacaaatcga tggatgttaa tgaagtacaa tttcaagatt tgtctgagtt 4020 aacttttctg agtagaggtt tcaaacgaca tgctcttgga tatcacatgg ctcctctcaa 4080 gtgggtttca atcattgagc ccatgtattg gataagacct gccccaggtt gtcctgacac 4140 tcaggccatg atggaaaatg tggaaacagg aatacgcgaa gctttccacc atggtcgtgt 4200 ggcctatgac aaacttgtct cagatgttca gacggcattg gatgaaaggg gtttcagagc 4260 tgtgatcttt ccttcctatc tggaagtgga acaggaatgg attgcaaagg taacagggga 4320 ttcaagcgcc ctgacaattt gtgaaatggc aaaagcggct atttcctata caccattgga 4380 tgcaggtgag aaggtcacaa attttgagcg tgatctgaat tggtttgcac caaacattgg 4440 tttttgttca gcacgtactg cagcccgcta tacgtgggat gaagggtaca ttgttgtcaa 4500 ctgtacaggt gcaaagaagt ccaattgggt tagaggtcca gccaactgga aggactttga 4560 aggggaaatg tggccgtaca ctatgtcagc cataatggat gcccaaaaga atgtgctgac 4620 aggaggacat gtggcaacca atgtcgtttt tgtgtgcgga aatggatatg ctgtcagccc 4680 aatttgcgca gcactgatgg ccttggcaac aaggcaatat tgtgtggagg acataatagt 4740 cagattgcgc acaattggca atgtgcttga cctcaatacc tatcctggag gctgtgtgca 4800 gtattttctc caatgtgtgc ctcatggaga caaagtggct caaagtggtg cattgcttca 4860 cagtagtttt atgcaccaag ggtttgaatt gggcaacctc cgcattatac atggtgattt 4920 ggcaaaacag acagcaatgc ggatgccata tgtggtagga ccacatggag gatggggaaa 4980 tttttccaca caagatcttg agagtttgct gcactacttg gagcagggat atgcagagtt 5040 gattcaaaag aatacaaaac taactctgta tttcaaagag ttgagtatgg aaaacgtgca 5100 acaactgata gattttgtta agctccaggg gttttttcca agagaaacca ccattcaaaa 5160 gctcaaaaat tttgttgatg ctgaacgtct tacattcaaa gcaagaagct ttaggcatgt 5220 agttttcaaa aagaaacttt tgagttccac atggaaaatg tgtggtgaaa atattgctgc 5280 ttcaagatct gcagagagtc tattccctgg caacttgtct gcttccgtat tgaaaacttt 5340 attggaaaga catacaagaa gcatgagttg tcagagtatg gaacttgctc tgaaaatata 5400 tctgttgaac ttccaagtga taacaagtga gatattaaag aagttcgaag atatgtatca 5460 ggagaagata tccaccaccc tactaattaa agtattcttg tggcttgagg agagttatca 5520 gactgagatc tgtatagatt ctcaggtgct tcagaggata aactcccaga aatttagagt 5580 gcaggaaggt ggtttttatt tacatcctga gggaatcaat atgaatgccg tggatgcaat 5640 aatattttct ctatgggagg tttatagtcg agatagtaac tcctattctg tgtcaactcc 5700 catcaaactg gggtgtttca tcttccttgt cgtgctagat agccaaggca aggaggacca 5760 ccctgttcgg aggttttcaa cagttttcct taaaaactgt gaaactatcc ttacaaatta 5820 caaggagcct tgagtcaggc attatgactc aatttgtgcg atatgcatgt gtactgttag 5880 taatgtatat cgctaggatg gttttgttaa gggagagtac tgtcttttgt tagatgggag 5940 tcccctccac tttatggaga ccaatgaaac tacattggta tggtgattag cgtgcttcac 6000 cttaaatatg gttcacgtgc cctgcttggc tagaaagtat gtggtgatta acactactca 6060 tttggagtat aagcaataga cctcatgatg tccaactcat gcgtgattgt tcatgtacga 6120 aataaatgaa ccgtttggaa ttcgataatt tcccttagct gctgaacagc tgtcaccatt 6180 aggggtggtg atgaagtagt gagaaacctc ttcttcccta ggttcgtcca gagggttcag 6240 attctcacct tctttgccaa gaagtaaaga atggcacgtg ttgcgtcgac aaagcaccgt 6300 ctagcgaggt tagctagaat tttatattat attagatatg aaaatttatt gtgtgatttc 6360 tttctgtagt ttagaaagtt tttcgtggcg atagagaggg tttgtccttt tacctctctt 6420 gctatgctgg acacaaaaag attttctttt cttttatttc aaaaaaaaaa aaaaaaaa 6478 //