Dbfetch

Dbfetch

ID   EF063388; SV 1; linear; genomic RNA; STD; VRL; 915 BP.
XX
AC   EF063388;
XX
DT   03-JAN-2007 (Rel. 90, Created)
DT   03-JAN-2007 (Rel. 90, Last updated, Version 1)
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DE   Potato virus M isolate Ca508 coat protein gene, complete cds.
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KW   .
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OS   Potato virus M
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
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RN   [1]
RP   1-915
RA   Xu H., D'Aubin J., Nie J.;
RT   "Genomic variability in Potato virus M and the development of conventional
RT   and real-time RT-PCR procedures for its detection in seed potatoes";
RL   Unpublished.
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RN   [2]
RP   1-915
RA   Xu H., D'Aubin J., Nie J.;
RT   ;
RL   Submitted (16-OCT-2006) to the INSDC.
RL   Charlottetown Laboratory, Canadian Food Inspection Agency, 93 Mt. Edward
RL   Rd., Charlottetown, PE C1A 5T1, Canada
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DR   MD5; 58df0c5f0bd083bec18ee78112cf6a3f.
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FH   Key             Location/Qualifiers
FH
FT   source          1..915
FT                   /organism="Potato virus M"
FT                   /host="potato"
FT                   /isolate="Ca508"
FT                   /mol_type="genomic RNA"
FT                   /country="Canada"
FT                   /db_xref="taxon:12167"
FT   CDS             1..915
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:A1YKT7"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:A1YKT7"
FT                   /protein_id="ABM21681.1"
FT                   /translation="MGDSTKKVEVAKEAGTSQAAKGNRPLPTAAEFEGDDTSGDASVRN
FT                   AEANEEASLERRLNSLREFLRERRGAIRVTNPGLETGRPRLKLADDMRPDPTNPYNRPS
FT                   LEALSRIKPIAVSNNMATSEDMMRIYVNLEGLGVPTEYVQQVVIQAVLFCKDASSSVYL
FT                   DPRGSFEWPRGAITADAVLAVMKKDAETLRRVCRLYAPVTWNHMLAHNSPPADWAAMGF
FT                   QYEDRFAAFDCFDYVENTAAVQPLEGLIRRPTPREKVAHNTHKDIALRGANRNQVFGSL
FT                   NAEVTGGMNGPELTRDFGKSNNK"
XX
SQ   Sequence 915 BP; 246 A; 216 C; 263 G; 190 T; 0 other;
     atgggagatt caacgaagaa agttgaagtt gccaaagaag ctggaacatc gcaagcggcc        60
     aaggggaaca gaccactacc tacggcggca gaatttgaag gtgatgacac ctctggagat       120
     gctagtgtcc gcaatgctga ggcaaatgag gaagcgtcac tggagcgcag attgaatagc       180
     ttgcgtgagt ttctacgtga gcgaagaggc gccatacggg taaccaatcc tggtttggag       240
     actggccgtc cacgactcaa gcttgcagac gacatgcgcc cggatccaac aaatccttac       300
     aacaggccgt cgcttgaggc actgagcaga attaaaccta tagctgtgtc aaacaatatg       360
     gccacatctg aggacatgat gcgcatctat gtcaatcttg aaggtttggg ggtgcccact       420
     gagtatgtgc agcaagtggt gatccaagcg gtgcttttct gcaaagatgc aagtagctcg       480
     gtgtatctcg atccacgcgg ctccttcgaa tggccaaggg gtgcaatcac tgcagatgcg       540
     gtgctggctg taatgaagaa agacgcagag actctgcgca gagtctgtag gctgtacgcg       600
     cccgtcacat ggaatcacat gctggcgcac aattccccac cagcggactg ggcggctatg       660
     ggtttccaat atgaagacag attcgcagcc tttgactgct ttgactacgt ggagaacaca       720
     gctgcagttc aaccactgga agggctgata cgccgtccta ccccaagaga gaaggttgcg       780
     cataacactc acaaggacat agctctgagg ggggccaatc gcaatcaggt gtttggttcg       840
     ctcaatgctg aggtaactgg aggtatgaat ggtcccgagc tcactaggga tttcggcaag       900
     tcgaataaca aatga                                                        915
//