ID EF063145; SV 2; linear; genomic DNA; STD; VRL; 1776 BP. XX AC EF063145; XX DT 14-NOV-2006 (Rel. 89, Created) DT 05-JUL-2008 (Rel. 96, Last updated, Version 3) XX DE Tomato leaf curl New delhi virus - India [India:Hissar:Cotton:2005] AV3 DE (AV3), AV2 (AV2), AV1 (AV1), AC5 (AC5), AC3 (AC3), and AC2 (AC2) genes, DE complete cds; and AC1 (AC1) gene, partial cds. XX KW . XX OS Tomato leaf curl New delhi virus - India [India:Hissar:Cotton:2005] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-1776 RA Pandey P., Reddy V.S., Mukherjee S.; RT "Nucleotide sequence of Cotton leaf curl virus DNA A isolate from Hissar"; RL Unpublished. XX RN [2] RP 1-1776 RA Pandey P., Reddy V.S., Mukherjee S.; RT ; RL Submitted (16-OCT-2006) to the INSDC. RL Plant Molecular Biology, ICGEB, Aruna Asaf Ali Marg, New Delhi, Delhi RL 110067, India XX RN [3] RC Sequence updated by database staff to remove vector contamination RP 1-1776 RA Pandey P., Reddy V.S., Mukherjee S.; RT ; RL Submitted (03-JUL-2008) to the INSDC. RL Plant Molecular Biology, ICGEB, Aruna Asaf Ali Marg, New Delhi, Delhi RL 110067, India XX DR MD5; 24132b214c0beb38f22018fdff3ba1b9. DR EuropePMC; PMC3125359; 21676270. DR EuropePMC; PMC4872795; 26963635. XX CC On Jul 3, 2008 this sequence version replaced gi:117583128. XX FH Key Location/Qualifiers FH FT source 1..1776 FT /organism="Tomato leaf curl New delhi virus - India FT [India:Hissar:Cotton:2005]" FT /segment="DNA A" FT /host="cotton" FT /isolate="CoLCV-UII Hissar" FT /mol_type="genomic DNA" FT /country="India" FT /note="severe phenotype" FT /db_xref="taxon:417895" FT gene 48..434 FT /gene="AV3" FT CDS 48..434 FT /codon_start=1 FT /gene="AV3" FT /product="AV3" FT /db_xref="UniProtKB/TrEMBL:A0N0F5" FT /protein_id="ABK41849.1" FT /translation="MKFTLHGLFSAWGPINRLAHQVWIHKHVGSIVARISRKRSWSKVH FT ASSKISPRDRKELFPRHSRLRSCPRSHSCSPSKELWRSDQQISSFQRPHRRYADVSTST FT APMELVQLSPLPASQKQRPGPTGR" FT gene 127..465 FT /gene="AV2" FT CDS 127..465 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /note="precoat protein" FT /db_xref="GOA:A0N0F6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A0N0F6" FT /protein_id="ABK41850.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 287..1057 FT /gene="AV1" FT CDS 287..1057 FT /codon_start=1 FT /gene="AV1" FT /product="AV1" FT /note="coat protein" FT /db_xref="GOA:A0N0F7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A0N0F7" FT /protein_id="ABK41851.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT EGKRFCVKSVYVLGKIWMDENIKTKNHPNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(317..802) FT /gene="AC5" FT CDS complement(317..802) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A0N0F8" FT /protein_id="ABK41852.1" FT /translation="MHVLHRCCARFIVKHVKNFPKILRGSCRTTVTDQKKHDTVRMVFC FT LDVFIHPYLPQHIDRFHTKSLPFAMCESSSSSNITNTHDFANMRDIVPRFKGLHLARAF FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSIGAVEVETSAYLRCGR" FT gene complement(1054..1464) FT /gene="AC3" FT CDS complement(1054..1464) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /note="replication enahncer" FT /db_xref="GOA:A0N0F9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A0N0F9" FT /protein_id="ABK41854.1" FT /translation="MITDSRTGEYITADRAESGVYTWETRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLRYLDMLGVIGI FT YNVIRAVYHVLDNVMEQTIDVQTSYDIKLDIY" FT gene complement(1184..1603) FT /gene="AC2" FT CDS complement(1184..1603) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /note="transactivator protein" FT /db_xref="GOA:A0N0G0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A0N0G0" FT /protein_id="ABK41855.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCTYYISIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFEARQQALPNTARHHQDSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT gene complement(1506..>1776) FT /gene="AC1" FT CDS complement(1506..>1776) FT /codon_start=2 FT /gene="AC1" FT /product="AC1" FT /note="replication-associated protein" FT /db_xref="UniProtKB/TrEMBL:A0N0G1" FT /protein_id="ABK41856.2" FT /translation="VIMGAQKDWQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDE FT EKDAALKQWAIKNAVFITLEEPLYSGRENIAPPEEEEEHSQEAS" XX SQ Sequence 1776 BP; 485 A; 390 C; 399 G; 502 T; 0 other; taatattacc gaatggccgc gcaaattttt tggtgggccc tcaaccaatg aaattcacgc 60 tacatggcct atttagtgcg tggggaccaa taaatagact tgctcaccaa gtttggatcc 120 acaaacatgt gggatccatt gttgcacgaa tttccagaaa gcgttcatgg tctaaggtgc 180 atgctagcag taaaatatct ccaagagata gaaaagaact attccccaga cacagtcggc 240 tacgatcttg tccgagatct cattcttgtt ctccgagcaa agaactatgg cgaagcgacc 300 agcagatatc atcatttcaa cgcccgcatc gaaggtacgc cgacgtctca acttcgacag 360 cccctatgga gctcgtgcag ttgtccccat tgcccgcgtc acaaaagcaa aggcctggac 420 caacaggccg atgaacagaa aacccagaat gtacagaatg tatagaagtc ccgacgtgcc 480 aaggggctgt gaaggccctt gcaaggtgca gtcctttgaa tctaggcacg atgtctctca 540 tattggcaaa gtcatgtgtg ttagtgatgt tactcgagga actggactca cacatcgcga 600 agggaagcga ttttgtgtga aatctgtcta tgtgctgggg aagatatgga tggatgaaaa 660 catcaagaca aaaaaccatc ctaacagtgt catgtttttt ctggtccgtg accgtcgtcc 720 tacaggatcc cctcaagatt ttggggaagt ttttaacatg tttgacaatg aaccgagcac 780 agcaacggtg aagaacatgc atcgtgatcg ttatcaagtc ttacggaaat ggcatgcgac 840 tgtgacggga ggaacatatg catctaggga gcaagcatta gttaggaagt ttgttagggt 900 taataattat gtagtttaca atcaacaaga ggccggcaag tatgagaatc atactgaaaa 960 tgcattaatg ttgtatatgg cctgtactca tgcatcaaat cctgtttatg ctactttgaa 1020 aatccggatc tatttctatg attcggtaac aaattaataa atatccagct ttatatcata 1080 tgaagtctgt acatcaatcg tttgttccat tacattatcc aaaacatgat aaactgctct 1140 tattacatta taaattccta ttacaccaag catatccagg tacctaagga cctgggtttt 1200 gaagactctc aagaaaatcc caatctgagg gcgtaagccc gtccagattt tgaaagttag 1260 aaaacacttg tgaagtccca gggctttccg caggttgtgg ttgaattgta tttgaatctt 1320 gatgatgtcg tgctgtgtta ggaagggcct gctgtcgtgc ttcaaaattt tgaaatacag 1380 gggatttcga gtttcccagg tatatacgcc actctctgct cgatccgcag tgatgtattc 1440 ccctgtgcgt gaatccgtga tcatggcagt tgatcgatat ataatatgta cacccacacg 1500 gaagatcaac tcgcctcctg cgaatgctct tcttcttctt ctgggggagc gatgttttcg 1560 cgaccggaat agagtggttc ttcgagtgtg atgaagactg cattcttgat tgcccactgc 1620 ttcagtgctg catccttctc ttcgtccaga tattccttat agctgctgtt tggaccttta 1680 ttgcacagga agatagtggg aattccacct ttaatcatga ccggctttcc gtacttcgtg 1740 ttgctttgcc agtctttctg ggcccccata atcact 1776 //