Dbfetch
ID EF043230; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC EF043230; XX DT 11-DEC-2006 (Rel. 90, Created) DT 11-DEC-2006 (Rel. 90, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus - [Potato] isolate Happur segment DNA A, DE complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus - [Potato] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Sumiya K.V., Malathi V.G.; RT ; RL Submitted (05-OCT-2006) to the INSDC. RL Division of Plant Pathology, Indian Agricultural Research Institute, Pusa RL Campus, New Delhi, Delhi 110012, India XX DR MD5; c35114785a0b132fdd421b2ec9db51f3. DR EuropePMC; PMC3125359; 21676270. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus - [Potato]" FT /segment="DNA A" FT /host="potato" FT /isolate="Happur" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="2005" FT /db_xref="taxon:270145" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:A1DRY4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A1DRY4" FT /protein_id="ABL09090.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDI FT ILVLRAKNYGEATSRYHLFNARFESTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 280..1053 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:A1DRY5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A1DRY5" FT /protein_id="ABL09089.1" FT /translation="MVKRPADIIFSTPVSKVRRRLNFDSPFGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGSGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(310..795) FT /gene="AC5" FT CDS complement(310..795) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A1DRY6" FT /protein_id="ABL09095.1" FT /translation="MHVLHRCCARFIVKHVKNFPKILWRSCRTTVTDQKKHDTVSMVFC FT LDVFIHPYLPQHIDRFHTKSLPYAMCESRSSGNITNTHDFANMRDIVPRFKGLHLTRAF FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSKGAVEVETSAYFRNGR" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:A1DRY7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A1DRY7" FT /protein_id="ABL09093.1" FT /translation="MITDSRTGESITADRAESGVYTWEIRNPLYFKILKHNSRPFLRQH FT DIINIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLRYLDRLGVIGI FT YNVIRAVYHVLDNVMEQTIDVWTSYDIKLDIY" FT gene complement(1177..1596) FT /gene="AC2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:A1DRY8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A1DRY8" FT /protein_id="ABL09092.1" FT /translation="MQSLSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLQCGCTYYISIH FT CHDHGFTHRGVHHCGSSREWRIYLGNSKSPVFQNFETQQQTLPKTARHHQYSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNTGP" FT gene complement(1499..2584) FT /gene="AC1" FT CDS complement(1499..2584) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:A1DRY9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A1DRY9" FT /protein_id="ABL09091.1" FT /translation="MTPPRRFRINAKNYFLTYPKCSLTKEDALSQLQTLETPTAKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKKYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDYVLQFH FT NLNTNLDRIFQPPSEIYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNTSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPTEEEEEHSQEAS" FT gene complement(2251..2427) FT /gene="AC4" FT CDS complement(2251..2427) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A1DRZ0" FT /protein_id="ABL09094.1" FT /translation="MGLRISMFSSNSKANSSAKITDSSTWFPQVGQHISIRTFRELNQH FT RTSKSTSTKTETF" XX SQ Sequence 2739 BP; 740 A; 580 C; 611 G; 808 T; 0 other; accgaatggc cgcgcaattt tttaggtggg ccctcaacca atgaaattcg agctacatgg 60 cttctttgct gcgtggggac caataaatag acttactcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctaagg tgcatgctag 180 ctgtaaaata tctccaagag atagaaaaga actattctcc agacacagtc ggctacgatc 240 ttgtccgaga tatcattctt gttcttcgag caaagaacta tggtgaagcg accagcagat 300 atcatctttt caacgcccgt ttcgaaagta cgccgacgtc tcaacttcga cagccccttt 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtccttt gaatctaggc acgatgtctc tcatattggc 540 aaagtcatgt gtgttagtga tgttacccga ggatctggac tcacacatcg cgtagggaag 600 cgattttgtg tgaaatctgt ctatgtgctg gggaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcatgttt tttttggtcc gtgaccgtcg tcctacagga 720 tctccacaag attttgggga agtttttaac atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc tactgtgacg 840 ggaggaacat atgcatctaa ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgttgtct ataaccaaca agaggccggc aagtatgaga atcatactga gaacgcatta 960 atgttgtata tggcctgtac tcatgcatca aatcctgtgt atgctacttt gaaaatccgg 1020 atctatttct atgattcggt aacaaattaa taaatatcga gttttatatc atatgaagtc 1080 catacatcaa tcgtttgttc cattacatta tccaaaacat gataaactgc tcttattaca 1140 ttataaattc ctattacacc aagcctatcc aggtacctaa ggacctgtgt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaatt gtatttgaat attgatgatg 1320 tcgtgctgtc ttaggaaggg tctgctgttg tgtttcaaaa ttttgaaata caggggattt 1380 cgaatttccc aggtatatac gccactctct gctcgatccg cagtgatgga ctcccctgtg 1440 cgtgaatccg tgatcatggc agtggatcga tatgtaatac gtacacccac actgcagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctgtggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgataaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcgttttt ttcttcgtcc agatattcct tatagctggt gtttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgactggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaaatgctt tagatagtgt ggatcaacgt 1800 catcaatgac gttgtaccag gcctcattgc tatacacctt tgggctcaga tcaagatgtc 1860 cacataagta attatggggt cctaagcaac gagcccacat tgttttgccc gttctactat 1920 ccccctctat gactatgctt atgggcctga aaggccgcgc agcggcacac accacattgg 1980 acgacaccca atcgacgagt tctggcggaa ctctgtcgaa ggatgaaatt gaaaatggag 2040 aaacataaat ctcagaagga ggttgaaaaa tgcgatctaa attggtattt aaattgtgaa 2100 actgcagaac ataatccttt ggggctaatt cctttaatac tttcaacgca tcgtctttat 2160 ttcccgtgtt aatcgcctga gcatatgcat cgttcgccgt ttgttgacct ccacgagcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacgtc tccgtctttg tcgatgtact 2280 ttttgacgtc cgatgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggaaac caagtcgaag aatctgttat ttttgcactg gaatttgcct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatcct cgtgaagctc tctacaaatc ttaatgaatt 2460 ttttcgcagt tggggtttct agggtttgca gttgggaaag tgcgtcctcc ttagttagag 2520 agcactttgg atatgtgagg aaatagtttt tggcatttat tctaaaacga cgtggtggag 2580 tcataaaact tgtcgttttg attcggcgtc cctcaacttg ctctatgtaa ttggtgtctg 2640 gagtcccata tataggtaag acaccatatg gcagaattgt aattttgaaa agaaaattac 2700 tttaattcaa attcctaaag cggccattca tctaatatt 2739 //