ID   EF026044; SV 1; linear; genomic RNA; STD; VRL; 1322 BP.
XX
AC   EF026044;
XX
DT   06-JUL-2007 (Rel. 92, Created)
DT   06-JUL-2007 (Rel. 92, Last updated, Version 1)
XX
DE   Melaka orthoreovirus segment S2, complete sequence.
XX
KW   .
XX
OS   Melaka orthoreovirus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Orthoreovirus;
OC   unclassified Orthoreovirus.
XX
RN   [1]
RP   1-1322
RX   DOI; 10.1073/pnas.0701372104.
RX   PUBMED; 17592121.
RA   Chua K.B., Crameri G., Hyatt A., Yu M., Tompang M.R., Rosli J.,
RA   McEachern J., Crameri S., Kumarasamy V., Eaton B.T., Wang L.F.;
RT   "A previously unknown reovirus of bat origin is associated with an acute
RT   respiratory disease in humans";
RL   Proc. Natl. Acad. Sci. U.S.A. 104(27):11424-11429(2007).
XX
RN   [2]
RP   1-1322
RA   Yu M., Chua K.B., Wang L.-F.;
RT   ;
RL   Submitted (26-SEP-2006) to the INSDC.
RL   Australian Animal Health Laboratory, CSIRO Livestock Industries, 5
RL   Portarlington Road, Geelong, VIC 3220, Australia
XX
DR   MD5; 578c21c09171de592ef680e09d6289ac.
XX
CC   GenBank Accession Numbers EF026043-EF026046 represent the S
CC   segments of the Melaka orthoreovirus genome.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1322
FT                   /organism="Melaka orthoreovirus"
FT                   /segment="S2"
FT                   /mol_type="genomic RNA"
FT                   /country="Malaysia"
FT                   /note="S-class"
FT                   /db_xref="taxon:419697"
FT   CDS             16..1266
FT                   /codon_start=1
FT                   /product="sigma 1"
FT                   /note="major inner capsid protein"
FT                   /db_xref="InterPro:IPR004317"
FT                   /db_xref="UniProtKB/TrEMBL:A6Y7R4"
FT                   /protein_id="ABM67658.1"
FT                   /translation="MARAVFDFFTTLFGNRGLPTDQRQLTSLLTSSNSPWQKQYSPLSL
FT                   SLTSSTISTPQQPFPGSAWYQESMLFSALLPPVLVNQDAWRDANYKRFCWTDAALSGLV
FT                   AAPDPPRAPPYVPVSGAWFDLTQYPRWANRRRELETKYPLLLRITLLNMMQNGPLIYVE
FT                   TWPNMLSGALVNFAMSCYGKDFREIAMVLAQSCSNMPFAPESSYDQQMRMMVSLWILSY
FT                   IGVVHQNATIAGFFFSTKTRGVRDEAWTLFYNTNGQRLNITQRHFGYFCARSADWNADS
FT                   SWLAASQLSALIMSCRQFPLLANQGVVNQAQNRPGYSSPNGVPVRELQLLACATECIRS
FT                   HVQAGLIDQAKGQTLTQNATDVNQVLQREIDDIKAADDALYNQNPEYARRLKPFQARSW
FT                   TVGQSMQSLAALTAFAT"
XX
SQ   Sequence 1322 BP; 297 A; 361 C; 304 G; 360 T; 0 other;
     gctttaagaa ccacgatggc gcgtgccgtg ttcgacttct ttactactct gtttggcaat        60
     cgcgggctac ccacggacca acgacaactc acatcgttac ttacctcgtc gaactctcca       120
     tggcagaagc aatacagtcc attgtctttg agcttaacgt cctccactat atcaacgcct       180
     cagcaacctt ttccaggttc cgcatggtac caggagtcaa tgctattcag tgcgctgtta       240
     cctccagttc tcgtgaacca ggatgcatgg cgtgatgcta attacaagcg tttctgctgg       300
     acagatgctg ccttgtcagg tctggtcgct gctcctgatc cacctcgtgc gcctccctac       360
     gtcccagtct ctggtgcctg gttcgacctc actcaatatc cccgttgggc gaatcgccgt       420
     agagaacttg aaaccaagta cccattgctg ctgcgtatca ctctgctgaa catgatgcag       480
     aacggtcctc taatctatgt ggagacgtgg cctaatatgt tgtccggcgc cttggtcaat       540
     ttcgctatgt catgttatgg taaggatttc agagagatcg caatggtgct agctcagtcc       600
     tgctctaata tgccgttcgc tccagagtct agttacgatc aacagatgcg tatgatggtc       660
     tctctttgga ttctctccta cattggtgtt gtccaccaga acgcgacgat tgcaggcttt       720
     ttcttctcaa ccaaaactcg tggtgttcgt gatgaggcat ggactctatt ctacaacact       780
     aatggtcaga ggctcaatat cacgcagcgg catttcggct atttctgtgc cagatctgct       840
     gattggaatg ctgactctag ctggctagct gcttctcagc taagcgcttt aataatgtcc       900
     tgcagacagt ttcccctgct cgcaaatcaa ggagttgtca atcaagctca aaatcgccca       960
     ggttattcca gtcccaatgg agtcccagta cgtgagttac agctgttggc ctgtgccact      1020
     gaatgtattc gctcccacgt ccaagcaggc ttaattgatc aggcaaaggg tcagacattg      1080
     acacaaaatg ctacggatgt taatcaggtg ctacagcgtg agattgacga catcaaggcc      1140
     gcagatgacg ctctatacaa tcaaaaccct gagtatgcta ggcgtctcaa accttttcag      1200
     gcccgctcct ggactgttgg acaatctatg caatccttgg ccgctctaac cgcgttcgca      1260
     acatagagta gggtcgaatg ctgttgtggg tccagccccc cctcagccgt ggtctaatca      1320
     tc                                                                     1322
//