ID EF012721; SV 1; linear; genomic RNA; STD; VRL; 4966 BP. XX AC EF012721; XX DT 20-APR-2007 (Rel. 91, Created) DT 20-APR-2007 (Rel. 91, Last updated, Version 1) XX DE Grapevine leafroll-associated virus 2 isolate PV20 heat shock protein 70, DE heat shock protein 90, minor coat protein, and major coat protein genes, DE complete cds; and P19 gene, partial cds. XX KW . XX OS Grapevine leafroll-associated virus 2 OC Viruses; Riboviria; Closteroviridae; Closterovirus. XX RN [1] RP 1-4966 RX DOI; 10.1016/j.jviromet.2006.11.042. RX PUBMED; 17223202. RA Beuve M., Sempe L., Lemaire O.; RT "A sensitive one-step real-time RT-PCR method for detecting Grapevine RT leafroll-associated virus 2 variants in grapevine"; RL J. Virol. Methods 141(2):117-124(2007). XX RN [2] RP 1-4966 RA Beuve M., Sempe L., Lemaire O.; RT ; RL Submitted (20-SEP-2006) to the INSDC. RL Virology, INRA, 28 rue de Herrlisheim, Colmar 68021, France XX DR MD5; 848e9486f4c213a43005ea4fff1b30f7. XX FH Key Location/Qualifiers FH FT source 1..4966 FT /organism="Grapevine leafroll-associated virus 2" FT /host="Vitis vinifera cv. Savagnin" FT /isolate="PV20" FT /mol_type="genomic RNA" FT /country="France" FT /isolation_source="leaves; wood" FT /db_xref="taxon:64003" FT CDS 1..1800 FT /codon_start=1 FT /product="heat shock protein 70" FT /note="HSP70; ORF3" FT /db_xref="GOA:A4ZIR9" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:A4ZIR9" FT /protein_id="ABK60003.1" FT /translation="MVVFGLDFGTTFSTVCVYKDGRVYSFKQNNSAYIPTYLYLFSNSN FT DMTFGYEAESLMHNSKVRGSFYRDLKRWVGCDGNNLDEYCERLKPHYSVRLVKIGAGLN FT ETVSIGNYGGTVKSEVHLPGLIASFIKSMISCAESAFACPCTGVVCSVPANYDSVQRNF FT TDQCVTLSGYRCVYMVNEPSAAALSTCNMINKKSASLAVYDFGGGTFDVSIISYRNNTF FT VVRASGGDLNLGGRDVDRAFLEHLFSLTSLEPDLSLDISNLKESLSKTDAEIVYTLKGV FT DDKKEDVRVSKNVLTKVMLPYVNRTLKILESTLKSYAKNMGEASNIKCDLVLIGGSSYL FT PGLEDILTKHPSIDRVLKVPDPRAAVAVGCALYSSCLTGSQGLLLVDCAAHTISIADKY FT CQQIICAPAGAPIPFSGTTPLYLARANKNSQRQIAVFEGEYVKCPKNRKICGANIKFFD FT IGVTNVAYTPITFYLDVAISSVGAISFVVRGPEGKEVSLTGTPAYNFLSVDLGTRSVRE FT LHISLSNKVHLGLLLHRLANRRLLFTKDEAVRYADTVEVTDVLKEYSSYTASSLPPDED FT VEPLMGKSVQKVLRGGRLEEIPL" FT CDS 1727..3334 FT /codon_start=1 FT /product="heat shock protein 90" FT /note="HSP90; ORF4" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:A4ZIS0" FT /protein_id="ABK60004.1" FT /translation="MSNHSWESLFKKFYGEADWKKYLSRSIAAHASEVKNLPDTQLYGG FT RIVRKADFESAQPRSFEQELGLFILSERDVQWSAMCGITVEEAAYELTNPRAYAYSGEK FT CVPDVKTEGQKFSMEDVKSFMLRSNLDVGDKVLTEQCWSLSNSCGVLVNPDDKERFVAL FT TFKNNADLISDQGTANVECRVGEYLVYAMSLFNYRSQRSQSGNVSLYEKYCEYIRTYLQ FT NTDLFFNAPERIPLLTGILYDFCKEYNVFYSTYKRNVDNFRFFLTNYMPLISDIFVFQW FT LKPAPDVRLLFEISAAELTLEVPTLNLIDSQVIIGHVLRYVESYTADPAIDAMEDKLEA FT IMKSNNPRLSTAQLWVGFYCYYGEYRTAQQRVVRRPDTYKTPDSVGGFEINMKEVEEFF FT SKLQRELPNVSLRRQFNGARAYEAFKIFKNGKISFKPISRLKIPKEFWYLNIDYFRHAN FT RTGLSEEEILILNNISIDVRKLCAERATSTQPSAKRLSGNYKFGASSLRQGRKIENPLV FT TLRNSLYEFQRRTHNGRG" FT CDS 3297..3968 FT /codon_start=1 FT /product="minor coat protein" FT /note="CPd; ORF5" FT /db_xref="GOA:A4ZIS1" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:A4ZIS1" FT /protein_id="ABK60005.1" FT /translation="MNSNAGLTTGGVETLETSGVVLTTRKDAVDKFFSELKNENYSSVD FT SSRLSDLEVKEVLEKSKESFKSELASKDEHFVYHIIFFLIRCAIISTSEKVKYVGGHTY FT VVEGKTYTVNDAWVFNMIKGLTKKYKRVNGLRAFCCACEDLYLTAAPTMSERFKTKSIG FT NKGLPVGKEYLGADFLSGTSKLMSDYDRAITITAAKNAVDRSAFTGSERRIVSLYDIGK FT I" FT CDS 4039..4635 FT /codon_start=1 FT /product="major coat protein" FT /note="CP; ORF6; 19 kDa" FT /db_xref="GOA:A4ZIS2" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:A4ZIS2" FT /protein_id="ABK60006.1" FT /translation="MELMSEENLSNLVITDASSLNGVDKKQLAAEVIKMLIEKGAPQEG FT VEVVFGLLLYALAARTTSPKVQRSESDVILSNRFGERTVIVTEGDLKKVLENFPALAKY FT TNKMRTFGRTFTEAYIDFCVAHGSKMPQLNAAVKLGIPADDSYLAADFLGACAKLSELQ FT QSRKMFASMYALKTEGGGVNVPVSNLRQLGRREVL" FT CDS 4635..>4966 FT /codon_start=1 FT /product="P19" FT /note="19 kDa protein; ORF7" FT /db_xref="UniProtKB/TrEMBL:A4ZIS3" FT /protein_id="ABK60007.1" FT /translation="MELCVQSSESLVLLRTNQNTILLVVKSDDDVVLPKILICGYLRVS FT HDGEVTGCDREDMIRDFRNNHYTILQSKFIHYDYESVTEEYVKSDCVVKFFLETGDVLW FT FFLKGNG" XX SQ Sequence 4966 BP; 1461 A; 943 C; 1166 G; 1396 T; 0 other; atggtggttt ttggtttgga tttcggtacg actttttcga ccgtttgtgt gtataaagac 60 ggtcgagtgt actccttcaa acaaaataat tccgcgtaca ttccgacgta tctctacctt 120 ttctcaaatt ctaacgatat gactttcggg tatgaggctg aatcgctcat gcataactcg 180 aaggtgaggg gctcttttta tagagatttg aaacgctggg tggggtgtga tggtaataac 240 ctggatgagt actgcgagcg tttaaaaccg cactattcag ttcgattagt aaagatcggt 300 gctggtttga atgaaaccgt ttcgataggt aactacgggg gcaccgtcaa atccgaggtg 360 catttaccgg gtttgatagc gagttttatt aaatcgatga tcagttgtgc agagtcggct 420 ttcgcctgtc cctgcactgg agtggtttgc tcagtgcccg cgaattacga tagtgttcag 480 aggaatttca ccgaccaatg cgtgacattg agtggatatc gatgcgtata catggtcaac 540 gaaccatccg ctgccgccct ttcgacctgt aatatgataa ataagaagtc tgcgagtcta 600 gccgtatatg atttcggcgg tgggactttt gacgtttcta tcatctcgta ccgcaacaac 660 acttttgttg tgcgtgcatc cggaggtgat ctgaatctcg gtgggaggga cgtggatcgc 720 gcctttttgg aacacctttt ttctttaact tctttagaac cagatctttc gttagatatt 780 tcgaatttaa aagaatcgct atctaaaact gatgctgaga ttgtttatac cctaaaaggt 840 gttgatgata agaaggaaga tgtgagggtt agtaagaatg ttctcacgaa agtgatgctt 900 ccttacgtga acagaacgtt gaaaatttta gaatccactc tcaaatcata cgcaaaaaat 960 atgggagaag catcgaacat aaagtgtgat ttagtgttga ttggcgggtc gtcttacctt 1020 ccgggtctgg aagatatttt aaccaagcat ccgagcatcg atcgggttct gaaagttccg 1080 gaccctcgag cagcagtcgc ggttggctgc gcattatact catcgtgtct aaccgggtcg 1140 caaggtttat tattagttga ttgtgcggct cacacaatat ctattgccga caaatactgt 1200 caacagatca tatgcgcgcc agctggagca ccaattcctt tctcgggtac tacgccttta 1260 tacttggcta gagctaataa aaattcgcag cgtcaaatcg ctgtgttcga aggcgagtac 1320 gttaaatgtc ccaaaaacag aaagatctgt ggagctaata taaaattctt tgatataggg 1380 gtgacgaatg tcgcatacac tcctatcacc ttctatttag atgtggctat ctctagtgtg 1440 ggagctatat cttttgttgt taggggtccg gaggggaaag aggtgtcttt aacaggaacg 1500 cccgcttaca atttcttatc cgtagatctc ggaacacgca gtgtccgaga attacatatt 1560 agtttaagca ataaagttca tcttggtttg cttttacatc gactagcaaa taggcgattg 1620 ttgttcacta aggacgaagc ggttcgttac gcggacactg tagaagtgac tgacgtgtta 1680 aaagaatatt ccagctatac cgcaagttcc ctacctccag acgaggatgt cgaaccactc 1740 atgggaaagt ctgttcaaaa agttttacgg ggaggcagat tggaagaaat acctctctag 1800 gagtattgcg gctcacgcgt ctgaagttaa aaaccttcct gatacgcagc tgtacggcgg 1860 taggatcgta agaaaagcgg attttgaatc ggcacaaccg agatcttttg aacaagaatt 1920 gggactcttc atattaagtg aacgggacgt gcaatggagt gcgatgtgcg gcataacagt 1980 cgaagaggcc gcgtacgaac tcaccaatcc cagagcttac gcctacagtg gagagaagtg 2040 tgttcctgat gtcaaaacag aaggtcaaaa attttccatg gaagacgtta agagttttat 2100 gctgcgatct aacttagacg tgggagacaa agttttaact gaacagtgtt ggtctctttc 2160 caactcgtgt ggggtcttag tgaatcctga tgataaagag cgatttgtgg cgcttacttt 2220 caagaacaat gctgatttaa tcagcgatca aggtaccgcc aacgtggaat gtcgtgtagg 2280 tgaatatcta gtttacgcta tgtcactttt taattacaga agtcagaggt cacaatctgg 2340 gaatgtttct ttgtatgaaa agtattgtga gtatattaga acgtacttac aaaacacaga 2400 tttgtttttt aatgcaccag aaaggatccc gttgcttaca ggcatcctgt acgacttctg 2460 caaagagtat aatgtattct attccactta caaacgtaac gttgataatt tcagattctt 2520 tctaacgaat tatatgcctc taatatcaga catattcgta tttcagtggt taaagccagc 2580 tccggacgta cgactactat tcgaaataag tgctgcggaa ttaacgttag aagtcccaac 2640 actcaattta attgattcgc aagtgataat aggccatgtg ttaagatacg tcgaatcgta 2700 tacggcagac ccggctattg atgctatgga ggataaactg gaggctataa tgaaatctaa 2760 taacccacgg ttatccacag cgcaattgtg ggtaggtttt tactgctatt atggtgaata 2820 tcgaacggct caacaacgag tcgtgcgaag accagacacg tacaaaactc ccgattccgt 2880 aggtggtttt gaaataaaca tgaaggaggt tgaagagttc tttagtaaat tgcagaggga 2940 gttacctaac gtatctttgc gacgacaatt taacggtgct agagcgtacg aagcctttaa 3000 gattttcaaa aatgggaaaa taagttttaa gcctatatcc cgcttaaaaa taccgaaaga 3060 attttggtat ttaaatatag actacttcag gcacgcgaac agaacgggtt tgagcgaaga 3120 agagatcctt atcttaaata acataagtat cgatgttcga aaattgtgcg ctgagagagc 3180 aactagtacc cagcctagcg ctaagcgcct tagtggaaat tataaatttg gtgcatcgtc 3240 attacgtcaa gggcgtaaaa ttgaaaatcc gctggtaaca ctaagaaact ctctgtatga 3300 attccaacgc aggactcaca acgggagggg ttgaaacgct tgaaacttca ggggttgtgc 3360 tgaccacgcg caaagatgcg gtggataagt tcttcagtga gttaaaaaat gagaactact 3420 cttcggtgga tagtagccga ttaagtgacc tagaagtcaa agaagttctc gaaaaaagca 3480 aagaaagttt taagagcgaa ctagcgtcta aagatgaaca ctttgtttac cacatcattt 3540 tcttcttaat taggtgtgcc attatatcaa cgagtgaaaa agtcaagtac gttggtggcc 3600 acacatacgt tgttgaagga aaaacttaca ccgtcaacga tgcttgggta tttaacatga 3660 tcaaaggttt aacgaaaaaa tacaaaagag tcaacggttt acgcgctttt tgttgcgctt 3720 gtgaagacct gtacctcacc gcagcaccca cgatgtcaga gcgatttaaa accaagagca 3780 taggtaataa aggtctgcct gtggggaagg aatatcttgg tgctgacttt ttatcaggaa 3840 caagtaaact aatgagcgat tacgatagag ctatcaccat aacagcagca aagaacgcgg 3900 ttgaccgaag cgcttttact ggaagtgaaa gaaggatagt tagcttatac gacataggaa 3960 agatctaaac acgttgtgct ttagcgtgtg ccataatcat aagttataat acttaaaggt 4020 gtggtgcaag gaatcacaat ggaattaatg tccgaagaga acctgagcaa cctagtcatt 4080 accgacgcct caagcttgaa tggtgtcgat aaaaagcagc tagctgccga agtaattaaa 4140 atgttaattg agaagggtgc acctcaagaa ggtgttgaag tagtgtttgg tttactactt 4200 tatgctctag ctgcgagaac tacttcccct aaagttcagc gatcggaatc tgacgtgatt 4260 ctctccaata gattcggtga gagaactgtt atcgtcactg agggcgattt gaaaaaagta 4320 ctcgagaact ttcccgctct cgctaaatat actaataaaa tgcgaacatt cggccgcacc 4380 ttcactgaag cttacatcga cttctgcgta gctcacggaa gtaagatgcc tcagctcaac 4440 gccgcagtca aactaggaat accagcagat gattcttatc tagcggcaga tttcttgggt 4500 gcttgtgcga agctctctga actgcagcaa agtagaaaga tgtttgctag catgtatgct 4560 ctcaagactg aaggtggcgg cgtgaacgta ccagtgagta atctgcgcca attgggtaga 4620 agagaagtgt tgtaatggag ctgtgtgttc aatcctctga atcgttagtt ttactacgta 4680 cgaatcagaa cacgattcta ctagtcgtta aatccgacga tgatgtggtg ttgcccaaaa 4740 ttttaatttg cggttatttg cgtgtctctc atgatggaga ggttaccggt tgtgaccgcg 4800 aagatatgat tagagacttt cgaaacaatc actacaccat actgcaatca aaattcatac 4860 attacgatta cgaatctgta accgaagaat atgttaaatc tgattgtgtg gtgaaattct 4920 ttttagaaac tggagacgtt ctttggtttt tcttaaaagg caacgg 4966 //