ID DQ989326; SV 1; circular; genomic DNA; STD; VRL; 2764 BP. XX AC DQ989326; XX DT 25-OCT-2006 (Rel. 89, Created) DT 04-JUL-2012 (Rel. 113, Last updated, Version 4) XX DE Chilli leaf curl virus-India [India:Papaya:2005] segment A, complete DE sequence. XX KW . XX OS Chilli leaf curl virus-India [India:Papaya:2005] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2764 RX PUBMED; 22437254. RA Singh-Pant P., Pant P., Mukherjee S.K., Mazumdar-Leighton S.; RT "Spatial and temporal diversity of begomoviral complexes in papayas with RT leaf curl disease"; RL Arch. Virol. 157(7):1217-1232(2012). XX RN [2] RP 1-2764 RA Singh P., Mazumdar-Leighton S., Mukherjee S.K.; RT ; RL Submitted (11-SEP-2006) to the INSDC. RL Plant Molecular Biology, ICGEB, Aruna Asaf Ali Marg, New Delhi, Delhi RL 110067, India XX DR MD5; a8356e913c1c8fbf5141fe6e5792bcf1. XX FH Key Location/Qualifiers FH FT source 1..2764 FT /organism="Chilli leaf curl virus-India FT [India:Papaya:2005]" FT /segment="A" FT /host="Carica papaya cultivar African dwarf" FT /isolate="AD" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /db_xref="taxon:910428" FT gene 148..504 FT /gene="AV2" FT CDS 148..504 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /note="pre-coat protein" FT /db_xref="GOA:A0FEP1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A0FEP1" FT /protein_id="ABJ97341.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYAPDTLGYDLIRDL FT ISVIRAKNYVQATSRYNHFNARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ FT EAQDVQDVQKPRCS" FT gene 308..1078 FT /gene="AV1" FT CDS 308..1078 FT /codon_start=1 FT /gene="AV1" FT /product="AV1" FT /note="coat protein" FT /db_xref="GOA:A0FEP2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A0FEP2" FT /protein_id="ABJ97342.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPTVRVTKARAWV FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGFTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDKEP FT STATVKNMHRDRYQVLRKWHAAVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(338..823) FT /gene="AC5" FT CDS complement(338..823) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A0FEP3" FT /protein_id="ABJ97343.1" FT /translation="MHILHSGSARLFVKHVEHLSKILWFINRTTITDKEKHHTIRVILS FT LDILIHPYLPQYVHRLNTETLTYSMGEPSTTGNITNTHNLPYMNYIVSRLKRLDLTWAF FT TTPRNIWASVHPVHPGLPVHGPVHPCSGLCDADSGGSSTAGIRAVEVETAAYLRGGR" FT gene complement(1075..1479) FT /gene="AC3" FT CDS complement(1075..1479) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /note="replicase-associated protein" FT /db_xref="GOA:A0FEP4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A0FEP4" FT /protein_id="ABJ97344.1" FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKITEHHNRPFLRNHDI FT ITMQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVYKYLNNFAVISINN FT VLRAVNHVLWNVLAQTIHVQSSNIIKFNLY" FT gene complement(1220..1624) FT /gene="AC2" FT CDS complement(1220..1624) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /note="replicase-associated protein" FT /db_xref="GOA:A0FEP5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A0FEP5" FT /protein_id="ABJ97345.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREFRVYLGDNKSPVFQDNRAPQPAIPKEPRHHHHADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1527..2612) FT /gene="AC1" FT CDS complement(1527..2612) FT /codon_start=1 FT /gene="AC1" FT /product="AC1" FT /note="replicase" FT /db_xref="GOA:A0FEP6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A0FEP6" FT /protein_id="ABJ97346.1" FT /translation="MAPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLSTPTNKLFIR FT VSRELHENGEPHLHVLIQFEGKFNCQNNRFFDLVSPTRPAHFHPNIQGAKSSSDVKAYV FT EKDGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDFVLQYH FT NLSTNLDRIFTPPLEVYVSPFTSSSFDQVPEELDEWAAENVLGAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALQNWALKNATFITLEGPL FT YSGSNQSAAQAGQEGDQASSG" FT gene complement(2162..2455) FT /gene="AC4" FT CDS complement(2162..2455) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A0FEP7" FT /protein_id="ABJ97347.1" FT /translation="MGNLIYTSSYNSKVNSIAKTTDSSTSFPQPGQHISIRTFRELKAR FT QMSRPMWRKTETSLILEFSRSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2764 BP; 745 A; 566 C; 643 G; 810 T; 0 other; accggatggc cgcgattttt ttttaccgtg ggccccacca cgcacgtgct gacaaagaca 60 tgtgaaccaa ttaaaaacgt ccctcatagc ttaattattt catggtcccc cctataaact 120 tgtgctccaa gtagtgcact cttaccaatg tgggatccat tagtaaacga gtttcctgaa 180 accgttcacg gttttaggtg tatgttagca gttaaatatc tgcagctact agaaaataca 240 tatgctccag acactctggg gtacgattta atcagggatt tgatctccgt tattagggct 300 aagaattatg tccaagcgac cagcagatat aatcatttca acgcccgcct cgaaggtacg 360 ccgccgtctc aacttcgaca gcccttatgc cagccgtgct gctgccccca ctgtccgcgt 420 cacaaaggcc agagcatggg tgaacaggcc catgaacagg aagcccagga tgtacaggat 480 gtacagaagc ccagatgttc ctaggggttg tgaaggccca tgtaaggtcc agtcttttga 540 gtctagacac gatgtagttc atatagggaa ggttatgtgt attagtgatg ttacccgtgg 600 tactgggttc acccatagag taggtaagcg tttctgtgtt aagtctgtgt acgtattggg 660 gaagatatgg atggatgaga atatcaagac taagaatcac acgaatagtg tgatgttttt 720 ccttgtccgt gatcgtcgtc ctgttgataa accacaagat tttggagagg tgttcaacat 780 gtttgacaaa gagcctagca ctgccactgt gaagaatatg catagagatc gttatcaggt 840 tttgaggaaa tggcacgcag cggttactgg tggacagtac gcgtcgaagg aacaggcatt 900 agttaagaag ttcgttaggg ttaataatta tgttgtgtat aaccagcagg aagctggtaa 960 atatgagaat cataccgaga atgcattgat gttgtacatg gcgtgtactc atgcctctaa 1020 tcctgtgtat gctaccttaa agatacggat ctatttctat gattcagtat cgaattaata 1080 aagattgaat tttattatat tcgaactttg tacatgaatt gtttgtgcta atacattcca 1140 taatacatgg ttgacagctc taagtacatt gtttatacta attacagcaa aattatttaa 1200 atacttatac acttgtgtcc taaataccct taagaaatga ccagtctgag gctgtaaggt 1260 cgtccagatt cggaaggtta gaaaacattt gtgtatcccc aacgctttcc tcaggttgtg 1320 attgaaccgt atctgcatgg tgatgatgtc gtggttcctt aggaatggcc ggttgtggtg 1380 ctctgttatc ttgaaataca ggggatttgt tatctcccag ataaacacgg aattctctgc 1440 ttgagctgca gtgatgggtt cccctgtgcg tgaatccata tccgtggcag cgtaatgcga 1500 tgaaatatga acaaccgcag tctaggtcaa cccgacgacg cctggtcccc ttcttggcca 1560 gcctgtgctg cactttgatt ggaacctgag tagagtgggc cttcgagggt gatgaaggtc 1620 gcattcttta aagcccaatt ttggagtgcg ctatttttct cttcatccaa gaactcttta 1680 tagctggaat tgggtcctgg attgcagagg aagatagcgg gaattccacc tttaatttga 1740 actggctttc cgtatttagt gtttgattgc cagtcccttt gggcccccat gaattcttta 1800 aaatgcttta ggtagtgggg atcgacgtca tcaatgacgt tgtaccaggc gtcattactg 1860 tagacctttg ggctaaggtc gagatgtcca cacaaatagt tgtgtggacc taatgacctg 1920 gcccacatag tcttccccgt cctactatca ccctctatca caatactcat gggtctcaaa 1980 ggccgcgcag cggcaccgag aacattctcg gcagcccatt cgtcaagttc ctcgggaact 2040 tgatcaaaag aagaagaagt aaaaggagaa acataaacct ccaacggagg cgtaaaaatc 2100 ctatctaaat ttgtacttaa attatgatat tgtaatacaa aatctttggg agctttctcc 2160 cttaatatat tgagggccgc agctttggac cctgaattga ttgcctcggc atatgcgtcg 2220 ttggcagact gctgacctcc tctagctgat cttccatcga cctggaaaac tccaaaatca 2280 atgaagtctc cgtctttctc cacataggcc ttgacatctg acgagctttt agctccctga 2340 atgttcggat ggaaatgtgc tggcctggtt ggggaaacga ggtcgaagaa tctgttgttt 2400 tggcaattga atttaccttc gaattgtatg aggacgtgta gatgaggttc cccattttca 2460 tgtaattctc gagaaaccct gatgaacaat ttattagtgg gggtgcttag gttttgaagt 2520 tgggaaagtg cttcttcttt agtgagggaa cactgtggat aagttaagaa ataattttta 2580 gcatatattt gaaaacgttt tggaggagcc attttgactt ggtcaatcgg tactcaacaa 2640 cctaggctat gcaatcggtg aatggtactc aatatatagt gtgagtacca aatggcatgt 2700 tcgtaatttt gaaggcaaat tcaaaattca aattccgaca aaagcggcca tccgcactaa 2760 tatt 2764 //