ID DQ989325; SV 1; circular; genomic DNA; STD; VRL; 2735 BP. XX AC DQ989325; XX DT 25-OCT-2006 (Rel. 89, Created) DT 04-JUL-2012 (Rel. 113, Last updated, Version 4) XX DE Tomato leaf curl New Delhi virus-Papaya [India:New Delhi:Papaya:2005] DE segment A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus-Papaya [India:New Delhi:Papaya:2005] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2735 RX PUBMED; 22437254. RA Singh-Pant P., Pant P., Mukherjee S.K., Mazumdar-Leighton S.; RT "Spatial and temporal diversity of begomoviral complexes in papayas with RT leaf curl disease"; RL Arch. Virol. 157(7):1217-1232(2012). XX RN [2] RP 1-2735 RA Singh P., Mazumdar-Leighton S., Mukherjee S.K.; RT ; RL Submitted (10-SEP-2006) to the INSDC. RL Plant Molecular Biology, ICGEB, Aruna Asaf Ali Marg, New Delhi, Delhi RL 110067, India XX DR MD5; 868d16a5364a27d3182ffe3f993f797c. DR EuropePMC; PMC3125359; 21676270. XX FH Key Location/Qualifiers FH FT source 1..2735 FT /organism="Tomato leaf curl New Delhi virus-Papaya FT [India:New Delhi:Papaya:2005]" FT /segment="A" FT /host="Carica papaya cultivar Pusa dwarf" FT /isolate="PD" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /db_xref="taxon:910427" FT CDS 48..434 FT /codon_start=1 FT /product="AV3" FT /db_xref="UniProtKB/TrEMBL:A0FEN3" FT /protein_id="ABJ97333.1" FT /translation="MKFTLHGLFSAWGPINRLAHQVWIHKHVGSIIARISRKRSWSKVH FT ASCKISPRDREELFPRHSRLRSCPRSHSCSPSKELWRSDQQISSFQRPHRRYADVSTST FT ARMELVQLSPLPASQKQRPGPTGR" FT CDS 127..465 FT /codon_start=1 FT /product="AV2" FT /note="pre-coat protein" FT /db_xref="GOA:A0FEN4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A0FEN4" FT /protein_id="ABJ97334.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTFQLRQPVWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT CDS 287..1057 FT /codon_start=1 FT /product="AV1" FT /note="coat protein" FT /db_xref="GOA:A0FEN5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A0FEN5" FT /protein_id="ABJ97335.1" FT /translation="MAKRPADIIISTPASKVRRRFNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(317..802) FT /codon_start=1 FT /product="AC5" FT /note="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A0FEN6" FT /protein_id="ABJ97336.1" FT /translation="MHVLHRCCARFIVKHVKNFPKILGGSCRTTVTNQKKHDTVSMVFC FT LDVFIHPYLPQHIDRFHTKSLPHAMCESSSSSNITNAHDFANMRDIVPRFKRLHLTRPF FT TAPWHIGTPIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSIRAVEVETSAYLRCGR" FT CDS complement(1054..1464) FT /codon_start=1 FT /product="AC3" FT /note="replicase-associated protein" FT /db_xref="GOA:A0FEN7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A0FEN7" FT /protein_id="ABJ97337.1" FT /translation="MITDSRTGEYITADRTESGVYTWEIPNPLYFKITEHHNRPFLMNH FT DIITVQIQFNHNLRKALGIHKCFLAFQIWMTSQPPTGRFLRVFKTQVIMYLDNVGVISI FT NNVIRAVDHVLWNVLHHIVNVEQSYSIKFYLY" FT CDS complement(1199..1603) FT /codon_start=1 FT /product="AC2" FT /note="replicase-associated protein" FT /db_xref="GOA:A0FEN8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A0FEN8" FT /protein_id="ABJ97338.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGVHHCGSYREWRIYLGNSKSPVFQDNRTPQPAISHEPRHHHRTDTIQSQP FT EESIGDTQMFSSLPNLDDLTASDWSFLKGL" FT CDS complement(1506..2597) FT /codon_start=1 FT /product="AC1" FT /note="replicase" FT /db_xref="GOA:A0FEN9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A0FEN9" FT /protein_id="ABJ97339.1" FT /translation="MAPPRRFRIDAKNYFLTYPKCSLTKEEALSQLQTLETPTAKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKIYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYANAINTGNKEDALKVLKELAPKDYVLQFH FT NLISNLDRIFHLDSEVYVSPIFISSVDRVPPELGRWASVNVVCALRGLLGSISIVIEGG FT VGTRKTMWACCLGTHHNLLVWTSWILSPRFYSIDALYHVVDDVDPHYLKHFKEFMGAQR FT DWQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEE FT PLYSGRENIAPAEEEEEHSQEAS" FT CDS complement(2264..2440) FT /codon_start=1 FT /product="AC4" FT /note="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A0FEP0" FT /protein_id="ABJ97340.1" FT /translation="MGLRISMFSSNSKGNSSARITDSSTWFPQVGQHISIRTFREQSPA FT QMSKYTSTKTETF" XX SQ Sequence 2735 BP; 747 A; 586 C; 617 G; 785 T; 0 other; taatattacc gaatggccgc gcaaattttt aggtgggccc tcaaccaatg aaattcacgc 60 tacatggctt atttagtgcg tggggaccaa taaatagact tgctcaccaa gtttggatcc 120 acaaacatgt gggatccatt attgcacgaa tttccagaaa gcgttcatgg tctaaggtgc 180 atgctagctg taaaatatct ccaagagata gagaagaact attccccaga cacagtcggc 240 tacgatcttg tccgagatct cattcttgtt ctccgagcaa agaactatgg cgaagcgacc 300 agcagatatc atcatttcaa cgcccgcatc gaaggtacgc cgacgtttca acttcgacag 360 cccgtatgga gctcgtgcag ttgtccccat tgcccgcgtc acaaaagcaa aggcctggac 420 caacaggccg atgaacagaa aacccagaat gtacagaatg tataggagtc ccgatgtgcc 480 aaggggctgt gaagggcctt gtaaggtgca gtcttttgaa tctaggcacg atgtctctca 540 tattggcaaa gtcatgtgcg ttagtgatgt tactcgagga actggactca cacatcgcgt 600 ggggaagcga ttttgtgtga aatctgtcta tgtgctgggg aagatatgga tggatgaaaa 660 catcaagaca aaaaaccata ctaacagtgt catgtttttt ttggttcgtg accgtcgtcc 720 tacaggatcc ccccaagatt ttggggaagt ttttaacatg tttgacaatg aaccgagcac 780 agcaacggtg aagaacatgc atcgtgatcg ttatcaagtc ttacggaagt ggcatgcgac 840 tgtgacagga ggaacatatg catctaggga gcaagcatta gttaggaagt ttgttagggt 900 taataattat gtagtttata atcaacaaga ggccggcaag tatgagaatc atacagaaaa 960 tgcattaatg ttgtatatgg cctgtactca cgcctctaac cccgtgtatg ccaccttgaa 1020 gatacggatc tatttctatg attcagtatc gaattaataa agataaaatt ttattgaata 1080 cgattgttct acattcacaa tatgatgtaa tacattccat aatacatgat caactgctct 1140 gattacattg ttaatactga taactcctac attatctaaa tacataataa cttgggtctt 1200 aaagaccctt aagaaacgac cagtcggagg ctgtgaggtc atccagattt ggaaggctag 1260 aaaacatttg tgtatcccca atgctttcct caggttgtga ttgaattgta tctgtacggt 1320 gatgatgtcg tggttcatga gaaatggccg gttgtggtgt tctgttatct tgaaatacag 1380 gggatttgga atttcccagg tatatacgcc actctctgta cgatccgcag tgatgtactc 1440 ccctgtgcgt gaatccgtga tcatggcagt tgatcgatat gtaatacgaa cacccacacg 1500 gcagatcaac tcgcctcctg cgaatgctct tcttcttctt ctgcgggagc gatgttttcg 1560 cgaccggaat agagtggttc ttcgagtgtg atgaagactg cattcttgat tgcccactgc 1620 ttcagtgctg catttttttc ttcgtccaga tattccttat aactgctgtt tggaccttta 1680 ttgcacagga agatagtggg aattccacct ttaatcatga ctggctttcc gtacttcgtg 1740 ttgctttgcc agtcacgctg ggcccccatg aattctttaa agtgctttag atagtgggga 1800 tcaacgtcat caacgacgtg gtacaaggca tcaatgctat agaaccttgg gctcagaatc 1860 caggatgtcc acacaagtaa attgtggtgt gtccctaagc aacaagccca cattgttttc 1920 ctggttccaa cacccccctc tatgactatg cttatggacc ctaaaaggcc gcgcagcgca 1980 cacacaacat tcacactggc ccatcgacca agttctggag gaactctgtc gacggatgaa 2040 atgaaaattg gagaaacgta aacctcagaa tcgaggtgaa aaatgcgatc taaattgctt 2100 attaaattgt gaaactgcag aacataatcc tttggggcta attcctttaa tactttcaat 2160 gcatcttctt tattccccgt gttaatcgcg ttagcatatg cgtcgttggc cgtctgctga 2220 ccaccacgag cagatcgtcc atcgatctgg aaaacacccc attctagaac gtctccgtct 2280 ttgtcgatgt atattttgac atctgagctg gactttgctc cctgaatgtt cggatggaaa 2340 tgtgctgacc gacttgggga aaccaagtcg aagaatctgt tattcttgca ctggaatttc 2400 ccttcgaatt ggatgagaac atggatatgc ggagacccat cctcgtgaag ctctctacag 2460 atcttgatga atttcttcgc agttggggtt tctagggttt gcaattggga aagtgcctct 2520 tctttagtta gagagcactt tggatatgtg aggaaatagt ttttggcatc tattctgaaa 2580 cgacgtggcg gagccataaa acttgtcgtt ttgattcggc gtccctcaac ttcctctatg 2640 taattggcgt ctggcgtccc atatataggt aggacgctaa atggcagaat tgtaattttg 2700 aaaagaaaat tactttaatt caaaatcctc atagc 2735 //