ID   DQ988107; SV 1; linear; genomic RNA; STD; VRL; 1366 BP.
XX
AC   DQ988107;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV14P4o04 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus RPV
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1366
RX   DOI; 10.1007/s00705-006-0913-x.
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1366
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the INSDC.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
DR   MD5; c357b34b83b5caa1dea9811ccd2991b4.
DR   GrainGenes; DQ988107; DQ988107.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1366
FT                   /organism="Cereal yellow dwarf virus RPV"
FT                   /host="Avena sativa L. (oats)"
FT                   /isolate="RPV14P4o04"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2004"
FT                   /db_xref="taxon:2170100"
FT   CDS             <1..573
FT                   /codon_start=1
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH57"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH57"
FT                   /protein_id="ABL67602.1"
FT                   /translation="VSDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSDG
FT                   TMLSQVKPGVQKSGSYNTSSTNSRIRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKDL
FT                   GFKVEVSKELEFCSHIFKSPTLAIPVNANKMLYRLIHGYNPECGNAEVIVNYLNAASSX
FT                   LHELRHDQELCALLHMWLVSGITTKDN"
FT   CDS             760..>1366
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH58"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH58"
FT                   /protein_id="ABL67600.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGSARRGR
FT                   RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT                   HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             785..1246
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH39"
FT                   /protein_id="ABL67601.1"
FT                   /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG
FT                   EEELQDLEEEAVARHSFSQRIHSQATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV
FT                   SYSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRR"
XX
SQ   Sequence 1366 BP; 354 A; 346 C; 331 G; 334 T; 1 other;
     gtctccgatt ggatgctcgc agacgatatg gaggtaagaa atcgtcttac catcgactgc        60
     aatgagctca ccagacacct tcgcgctgtc tggttgcaag gcatatcaaa ctctgtttta       120
     tgcctttcgg atggaaccat gctatcccag gttaagcccg gggtccaaaa gagtgggtcg       180
     tacaatacgt catctacgaa ctctaggatc cgggttatgg ctgcctatca ttgtggcgcc       240
     tcctgggcga tagcgatggg ggatgatgcc ctcgaagcgc cagatacaga tttgagcaag       300
     tacaaagatc tgggcttcaa agtcgaggtt agcaaggagc tagaattctg ttcacacatc       360
     ttcaagtctc ctaccctcgc cattccggtc aatgccaaca agatgttgta ccgcttgatc       420
     cacgggtaca atccggaatg tggaaacgct gaggtaattg ttaattacct caatgcagcc       480
     agctcantgc tgcatgagct ccgccatgat caggagcttt gcgcgttatt gcatatgtgg       540
     ttagtatctg gcataaccac aaaagataac tgagcagcaa aaccagccga gcatacgtaa       600
     gttgcaagcg tcggaggttt agtcttacac ataagcccaa gattgatttc aaattcatag       660
     cgggattcgc tacaggtttc atatcttcaa tccccatctc agttcttggt gtttattacg       720
     tctacctaag gatctcgacg catattcgtg aaattgttaa tgagtacggt cgtccttaga       780
     tccaatggca atggttcgcg cagacgcaga cagagagtcg ctcggcgaag gcctgctgca       840
     agaacgcagc cagtggttgt ggtcacttcc aacggctcag ccaggcgcgg aagacgccga       900
     cgaccagttg gtcctcggcg aggaagaact ccaagatctg gaggaggaag ccgtggcgag       960
     acattcgttt tctcaaagga ttcactcgca ggcaactcct ctggaagtat caccttcggg      1020
     ccgtctctat cagagtatcc ggcattccag aatggagtac tcaaggccta ccatgaatat      1080
     aagatcacaa attgtgtctt acagttcgtc agcgaggcct cttccacagc agccggctcc      1140
     atctcttatg agttggaccc ccattgcaaa gcatcttcac tcgcatcaac gatcaataag      1200
     ttcacaatca ccaaaactgg tgcgcggagc ttcccagcga agatgattaa cgggttagag      1260
     tggcaccctt cagacgaaga tcaattccgt atcctctata aagggaacgg tgcctcttcc      1320
     gtagctggtt ctttcaagat tacacttcgt gtacagctac aaaacc                     1366
//