ID   DQ988105; SV 1; linear; genomic RNA; STD; VRL; 1369 BP.
XX
AC   DQ988105;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV12P4o04 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus RPV
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1369
RX   DOI; 10.1007/s00705-006-0913-x.
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1369
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the INSDC.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
DR   MD5; 18056ca9248c947c2742ff31cfd0069d.
DR   GrainGenes; DQ988105; DQ988105.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1369
FT                   /organism="Cereal yellow dwarf virus RPV"
FT                   /host="Avena sativa L. (oats)"
FT                   /isolate="RPV12P4o04"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2004"
FT                   /db_xref="taxon:2170100"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH51"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH51"
FT                   /protein_id="ABL67596.1"
FT                   /translation="SVSDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSD
FT                   GTMLSQVKPGVQKSGSYNTSSTNSRIRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKD
FT                   LGFKVEVSKELEFCSHIFKSPTLAIPVNANKMLYRLIHGYNPECGNAEVIVNYLNAASS
FT                   VLHELRHDQELCALLHMWLVSGITTKDN"
FT   CDS             763..>1369
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH52"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH52"
FT                   /protein_id="ABL67594.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVASNGSARRGR
FT                   RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT                   HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             788..1249
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH39"
FT                   /protein_id="ABL67595.1"
FT                   /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG
FT                   EEELQDLEEEAVARHSFSQRIHSQATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV
FT                   SYSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRR"
XX
SQ   Sequence 1369 BP; 354 A; 348 C; 333 G; 334 T; 0 other;
     tcagtctccg attggatgct cgcagacgat atggaggtaa gaaatcgtct taccatcgac        60
     tgcaatgagc tcaccagaca ccttcgcgct gtctggttgc aaggcatatc aaactctgtt       120
     ttatgccttt cggatggaac catgctatcc caggttaagc ccggggtcca aaagagtggg       180
     tcgtacaata cgtcatctac gaactctagg atccgggtta tggctgccta tcattgtggc       240
     gcctcctggg cgatagcgat gggggatgat gccctcgaag cgccagatac agatttgagc       300
     aagtacaaag atctgggctt caaagtcgag gttagcaagg agctagaatt ctgttcacac       360
     atcttcaagt ctcctaccct cgccattccg gtcaatgcca acaagatgtt gtaccgcttg       420
     atccacgggt acaatccgga atgtggaaac gccgaggtaa ttgttaatta cctcaatgca       480
     gccagctcag tgctgcatga gctccgccat gatcaggagc tttgcgcgtt attgcatatg       540
     tggttagtat ctggcataac cacaaaagat aactgagcag caaaaccagc cgagcatacg       600
     taagttgcaa gcgtcggagg tttagtctta cacataagcc caagattgat ttcaaattca       660
     tagcgggatt cgctacaggt ttcatatctt caatccccat ctcagttctt ggtgtttatt       720
     acgtctacct aaggatctcg acgcatattc gtgaaattgt taatgagtac ggtcgtcctt       780
     agatccaatg gcaatggttc gcgcagacgc agacagagag tcgctcggcg aaggcctgct       840
     gcaagaacgc agccagtggt tgtggtcgct tccaacggct cagccaggcg cggaagacgc       900
     cgacgaccag ttggtcctcg gcgaggaaga actccaagat ctggaggagg aagccgtggc       960
     gagacattcg ttttctcaaa ggattcactc gcaggcaact cctctggaag tatcaccttc      1020
     gggccgtctc tatcagagta tccggcattc cagaatggag tactcaaggc ctaccatgaa      1080
     tataagatca caaattgtgt cttacagttc gtcagcgagg cctcttccac agcagccggc      1140
     tccatctctt atgagttgga cccccattgc aaagcatctt cactcgcatc aacgatcaat      1200
     aagttcacaa tcaccaaaac tggtgcgcgg agcttcccag cgaagatgat taacgggtta      1260
     gagtggcacc cttcagacga agatcaattc cgtatcctct ataaagggaa cggtgcctct      1320
     tccgtagctg gttctttcaa gattacactt cgtgtacagc tacaaaacc                  1369
//