ID   DQ988104; SV 1; linear; genomic RNA; STD; VRL; 1369 BP.
XX
AC   DQ988104;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV08P4o04 replicase gene, partial
DE   cds; coat protein-like gene, partial sequence; and 17k protein gene,
DE   complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus RPV
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1369
RX   DOI; 10.1007/s00705-006-0913-x.
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1369
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the INSDC.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
DR   MD5; 3f744ab5cf388b4df2208df52db48caa.
DR   GrainGenes; DQ988104; DQ988104.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1369
FT                   /organism="Cereal yellow dwarf virus RPV"
FT                   /host="Avena sativa L. (oats)"
FT                   /isolate="RPV08P4o04"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2004"
FT                   /db_xref="taxon:2170100"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH49"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH49"
FT                   /protein_id="ABL67593.1"
FT                   /translation="SVSDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSD
FT                   GTMLSQVKPGVQKSGSYNTSSTNSRIRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKD
FT                   LGFKVEVSKELEFCSHIFKSPTLAIPVNANKMLYRLIHGYNPECGNAEVIVNYLNAASS
FT                   VLHELRHDQELCALLHMWLVSGITTKDN"
FT   misc_feature    763..>1369
FT                   /note="similar to coat protein; ORF3"
FT   CDS             788..1249
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH50"
FT                   /protein_id="ABL67592.1"
FT                   /translation="MAMVRADADRESLGEGLLSERSQWLWSLPTAQPGAEDAEDQLVLG
FT                   EEELQDSEEEAVAKHLFSQRTHSRATPLEVSPSGRLYQTIRHSRMEYSRPTMSIRSQVV
FT                   SYSSSARPLPQQPVPSLMNWTPIAKSLRSHQPTISSQSPKLVRGASQRR"
XX
SQ   Sequence 1369 BP; 353 A; 349 C; 334 G; 333 T; 0 other;
     tcagtctccg attggatgct cgcagacgat atggaggtaa gaaatcgtct taccatcgac        60
     tgcaatgagc tcaccagaca ccttcgcgct gtctggttgc aaggcatatc aaactccgtt       120
     ttatgccttt cggatggaac catgctatcc caggttaagc ccggggtcca aaagagtggg       180
     tcgtacaata cgtcatctac gaactctagg atccgggtta tggctgccta tcattgtggc       240
     gcctcctggg cgatagcgat gggggatgat gccctcgaag cgccagatac agatttgagc       300
     aagtacaaag atctgggctt caaagtcgag gttagcaagg agctagaatt ctgttcacac       360
     atcttcaagt ctcctaccct cgccattccg gtcaatgcca acaagatgtt gtaccgcttg       420
     atccacgggt acaatccgga gtgtggaaac gctgaggtaa ttgttaatta cctcaatgca       480
     gccagctcag tgctgcatga gctccgccat gatcaggagc tttgcgcgtt attgcatatg       540
     tggttagtat ctggcataac cacaaaagat aactgagcag caaaaccagc cgagcatacg       600
     taagttgcaa gcgtcggagg tttagtctta cacataagcc caagattgat ttcaaattca       660
     tagcgggatt cgctacaggt ttcatatctt caatccccat ctcagttctt ggtgtttatt       720
     acgtctacct aaggatctcg acgcatattc gtgaaattgt taatgagtac ggtcgtcctt       780
     agatccaatg gcaatggttc gcgcagacgc agacagagag tcgctcggcg aaggcctgct       840
     gtcagaacgc agccagtggt tgtggtcact tccaacggcc cagccaggcg cggaagacgc       900
     cgaggaccag ctcgtcctcg gcgaagaaga actccaggac tcggaggagg aggccgtggc       960
     gaaacatttg ttttcacaaa ggactcactc gcgggcaact cctctggaag tatcaccttc      1020
     gggccgtctt tatcagacta tccggcattc cagaatggag tactcaaggc ctaccatgag      1080
     tataagatca caggttgtat cttacagttc gtcagcgagg cctcttccac agcagccggt      1140
     tccatcgctt atgaattgga cccccattgc aaaatctctt cgctcgcatc aaccaacaat      1200
     aagttcacaa tcaccaaaac tggtgcgagg agcttcccag cgaagatgat taacgggtta      1260
     gagtggcacc cttcagacga agattaattc cgtatcctct ataaagggaa cggtgcctct      1320
     tccgtagctg gttctttcaa gattacactt cgtgtacagc tacaaaacc                  1369
//