ID   DQ988102; SV 1; linear; genomic RNA; STD; VRL; 1353 BP.
XX
AC   DQ988102;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV51P3o04 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus RPV
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1353
RX   DOI; 10.1007/s00705-006-0913-x.
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1353
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the INSDC.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
DR   MD5; fdf923e26c6f96c810a2c4a6f4448e65.
DR   GrainGenes; DQ988102; DQ988102.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1353
FT                   /organism="Cereal yellow dwarf virus RPV"
FT                   /host="Avena sativa L. (oats)"
FT                   /isolate="RPV51P3o04"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2004"
FT                   /db_xref="taxon:2170100"
FT   CDS             <1..561
FT                   /codon_start=1
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH43"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH43"
FT                   /protein_id="ABL67588.1"
FT                   /translation="MLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSDGTMLA
FT                   QRVPGVQKSGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKDLGFKV
FT                   EVSGELEFCSHIFKTPNLAISVNENKMLYRLIHGYNPECGNFEVVQNYLNAAVSVLHEL
FT                   RHDRELCLKLQEWLISDVTTKLN"
FT   CDS             747..>1353
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH44"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH44"
FT                   /protein_id="ABL67586.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPATRTQPVVVVTSNGSARRGR
FT                   RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT                   HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             772..1233
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH39"
FT                   /protein_id="ABL67587.1"
FT                   /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG
FT                   EEELQDLEEEAVARHSFSQRIHSQATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV
FT                   SYSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRR"
XX
SQ   Sequence 1353 BP; 354 A; 341 C; 324 G; 334 T; 0 other;
     atgctcgcgg atgacatgga ggtgagaaat cgcctaacaa tcgactgcaa cgagctcacc        60
     agacacctta gggctgtttg gcttcaaggc atatcaaact cggttttgtg cctgtcggat       120
     ggaaccatgt tagctcaacg agtacccggc gtgcagaaaa gtggctcgta caacacttcg       180
     tccacaaact cacgcgtccg ggtcatggct gcctatcact gtggcgcctc gtgggctatc       240
     gctatgggtg atgatgccct ggaagctcca gatacagact tgtcaaaata taaagatctg       300
     ggcttcaaag tcgaggttag cggagagttg gaattctgtt cgcacatttt caagacccct       360
     aacctcgcca tttcggttaa tgaaaacaaa atgttgtacc gcttgatcca cgggtacaat       420
     ccggaatgtg gcaattttga ggtggttcaa aactatctca atgcagctgt ctcagtgctg       480
     catgagctcc gacatgatcg ggagctttgc ctaaaacttc aagagtggtt gatttctgac       540
     gtcaccacaa aactaaactg agcacaaaac tagccggaca aacgtaagtt gcaagtgccg       600
     gaagtcaagt cttacacata agcccaacat tgattttcat ttgttagcgg gatttgccct       660
     tggatttata tcctcaatcc ccatttcagt tgttggtgtt tatctagtct accttaaggt       720
     ttcgacccac attcgtgaaa ttgttaatga gtacggtcgt ccttagatcc aatggcaatg       780
     gttcgcgcag acgcagacag agagtcgctc ggcgaaggcc tgctacaaga acgcagccag       840
     tggttgtggt cacttccaac ggctcagcca ggcgcggaag acgccgacga ccagttggtc       900
     ctcggcgagg aagaactcca agatctggag gaggaagccg tggcgagaca ttcgttttct       960
     caaaggattc actcgcaggc aactcctctg gaagtatcac cttcgggccg tctctatcag      1020
     agtatccggc attccagaat ggagtactca aggcctacca tgaatataag atcacaaatt      1080
     gtgtcttaca gttcgtcagc gaggcctctt ccacagcagc cggctccatc tcttatgagt      1140
     tggaccccca ttgcaaagca tcttcactcg catcaacgat caataagttc acaatcacca      1200
     aaactggtgc gcggagcttc ccagcgaaga tgattaacgg gttagagtgg cacccttcag      1260
     acgaagatca attccgtatc ctctataaag ggaacggtgc ctcttccgta gctggttctt      1320
     tcaagattac acttcgtgta cagctacaaa acc                                   1353
//