ID   DQ988101; SV 1; linear; genomic RNA; STD; VRL; 1354 BP.
XX
AC   DQ988101;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV20P2b03 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus RPV
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1354
RX   DOI; 10.1007/s00705-006-0913-x.
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1354
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the INSDC.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
DR   MD5; 21bf844c0ac7428313a9a3146581a8b8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1354
FT                   /organism="Cereal yellow dwarf virus RPV"
FT                   /host="Hordeum vulgare L. (barley)"
FT                   /isolate="RPV20P2b03"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2003"
FT                   /db_xref="taxon:2170100"
FT   CDS             <1..561
FT                   /codon_start=1
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH40"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH40"
FT                   /protein_id="ABL67585.1"
FT                   /translation="MLADDMEVRNRLTIDCNELTRHLCAVWLQGISNSVLCLSDGTMLS
FT                   QVKPGVQKSGSYNTSSTNSRIRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKDLGFKV
FT                   EVSKELEFCSHIFKSPTLAIPVNANKMLYRLIHGYNPECGNAEVIVNYLNAASSVLHEL
FT                   RHDQELCALLHMWLVSGITTKDN"
FT   CDS             748..>1354
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH41"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH41"
FT                   /protein_id="ABL67583.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGSARRGR
FT                   RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLRAY
FT                   HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             773..1234
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH42"
FT                   /protein_id="ABL67584.1"
FT                   /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG
FT                   EEELQDLEEEAVARHSFSQRIHSQATPLEVSPSGRLYQSIRHSRMEYSGPTMNIRSQIV
FT                   SYSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRR"
XX
SQ   Sequence 1354 BP; 352 A; 342 C; 329 G; 331 T; 0 other;
     atgctcgcag acgatatgga ggtaagaaat cgtcttacca tcgactgcaa tgagctcacc        60
     agacaccttt gcgctgtctg gttgcaaggc atatcaaact ctgttttatg cctttcggat       120
     ggaaccatgc tatcccaggt taagcccggg gtccaaaaga gtgggtcgta caatacgtca       180
     tctacgaact ctaggatccg ggttatggct gcctatcatt gtggcgcctc ctgggcgata       240
     gcgatggggg atgatgccct cgaagcgcca gatacagatt tgagcaagta caaagatctg       300
     ggcttcaaag tcgaggttag caaggagcta gaattctgtt cacacatctt caagtctcct       360
     accctcgcca ttccggtcaa tgccaacaag atgttgtacc gcttgatcca cgggtacaat       420
     ccggaatgtg gaaacgctga ggtaattgtt aattacctca atgcagccag ctcagtgctg       480
     catgagctcc gccatgatca ggagctttgc gcgttattgc atatgtggtt agtatctggc       540
     ataaccacaa aagataactg agcagcaaaa ccagccgagc atacgtaagt tgcaagcgtc       600
     ggaggtttag tcttacacat aagcccaaga ttgatttcaa attcatagcg ggattcgcta       660
     caggtttcat atcttcaatc cccatctcag ttcttggtgt ttattacgtc tacctaagga       720
     tctcgacgca tattcgtgaa attgttaatg agtacggtcg tccttagatc caatggcaat       780
     ggttcgcgca gacgcagaca gagagtcgct cggcgaaggc ctgctgcaag aacgcagcca       840
     gtggttgtgg tcacttccaa cggctcagcc aggcgcggaa gacgccgacg accagttggt       900
     cctcggcgag gaagaactcc aagatctgga ggaggaagcc gtggcgagac attcgttttc       960
     tcaaaggatt cactcgcagg caactcctct ggaagtatca ccttcgggcc gtctctatca      1020
     gagtatccgg cattccagaa tggagtactc agggcctacc atgaatataa gatcacaaat      1080
     tgtgtcttac agttcgtcag cgaggcctct tccacagcag ccggctccat ctcttatgag      1140
     ttggaccccc attgcaaagc atcttcactc gcatcaacga tcaataagtt cacaatcacc      1200
     aaaactggtg cgcggagctt cccagcgaag atgattaacg ggttagagtg gcacccttca      1260
     gacgaagatc aattccgtat cctctataaa gggaacggtg cctcttccgt agctggttct      1320
     ttcaagatta cacttcgtgt acagctacaa aacc                                  1354
//