ID   DQ988098; SV 1; linear; genomic RNA; STD; VRL; 1360 BP.
XX
AC   DQ988098;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV10P1b03 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus RPV
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1360
RX   DOI; 10.1007/s00705-006-0913-x.
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1360
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the INSDC.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
DR   MD5; aaee1fcc9fde98a4f75e88cff4001ab9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1360
FT                   /organism="Cereal yellow dwarf virus RPV"
FT                   /host="Hordeum vulgare L. (barley)"
FT                   /isolate="RPV10P1b03"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2003"
FT                   /db_xref="taxon:2170100"
FT   CDS             <1..567
FT                   /codon_start=1
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH31"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH31"
FT                   /protein_id="ABL67576.1"
FT                   /translation="DWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSDGTM
FT                   LSQVKPGVQKSGSYNTSSTNSRIRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKDLGF
FT                   KVEVSKELEFCSHIFKSPTLAIPVNANKMLYRLIHGYNPECGNAEVIVNYLNAASSVLH
FT                   ELRHDQELCALLHMWLVSGITTKDN"
FT   CDS             754..>1360
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH32"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH32"
FT                   /protein_id="ABL67574.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGSARRGR
FT                   RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT                   HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKLI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             779..1240
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH33"
FT                   /protein_id="ABL67575.1"
FT                   /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG
FT                   EEELQDLEEEAVARHSFSQRIHSQATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV
FT                   SYSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRS"
XX
SQ   Sequence 1360 BP; 353 A; 343 C; 331 G; 333 T; 0 other;
     gattggatgc tcgcagacga tatggaggta agaaatcgtc ttaccatcga ctgcaatgag        60
     ctcaccagac accttcgcgc tgtctggttg caaggcatat caaactctgt tttatgcctt       120
     tcggatggaa ccatgctatc ccaggttaag cccggggtcc aaaagagtgg gtcgtacaat       180
     acgtcatcta cgaactctag gatccgggtt atggctgcct atcattgtgg cgcctcctgg       240
     gcgatagcga tgggggatga tgccctcgaa gcgccagata cagatttgag caagtacaaa       300
     gatctgggct tcaaagtcga ggttagcaag gagctagaat tctgttcaca catcttcaag       360
     tctcctaccc tcgccattcc ggtcaatgcc aacaagatgt tgtaccgctt gatccacggg       420
     tacaatccgg aatgtggaaa cgctgaggta attgttaatt acctcaatgc agccagctca       480
     gtgctgcatg agctccgcca tgatcaggag ctttgcgcgt tattgcatat gtggttagta       540
     tctggcataa ccacaaaaga taactgagca gcaaaaccag ccgagcatac gtaagttgca       600
     agcgtcggag gtttagtctt acacataagc ccaagattga tttcaaattc atagcgggat       660
     tcgctacagg tttcatatct tcaatcccca tctcagttct tggtgtttat tacgtctacc       720
     taaggatctc gacgcatatt cgtgaaattg ttaatgagta cggtcgtcct tagatccaat       780
     ggcaatggtt cgcgcagacg cagacagaga gtcgctcggc gaaggcctgc tgcaagaacg       840
     cagccagtgg ttgtggtcac ttccaacggc tcagccaggc gcggaagacg ccgacgacca       900
     gttggtcctc ggcgaggaag aactccaaga tctggaggag gaagccgtgg cgagacattc       960
     gttttctcaa aggattcact cgcaggcaac tcctctggaa gtatcacctt cgggccgtct      1020
     ctatcagagt atccggcatt ccagaatgga gtactcaagg cctaccatga atataagatc      1080
     acaaattgtg tcttacagtt cgtcagcgag gcctcttcca cagcagccgg ctccatctct      1140
     tatgagttgg acccccattg caaagcatct tcactcgcat caacgatcaa taagttcaca      1200
     atcaccaaaa ctggtgcgcg gagcttccca gcgaagttga ttaacgggtt agagtggcac      1260
     ccttcagacg aagatcaatt ccgtatcctc tataaaggga acggtgcctc ttccgtagct      1320
     ggttctttca agattacact tcgtgtacag ctacaaaacc                            1360
//