ID   DQ988097; SV 1; linear; genomic RNA; STD; VRL; 1368 BP.
XX
AC   DQ988097;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV09P1b03 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus RPV
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1368
RX   DOI; 10.1007/s00705-006-0913-x.
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1368
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the INSDC.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
DR   MD5; 20a2062c3e039d0c5c9e79bf50ce27e1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1368
FT                   /organism="Cereal yellow dwarf virus RPV"
FT                   /host="Hordeum vulgare L. (barley)"
FT                   /isolate="RPV09P1b03"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2003"
FT                   /db_xref="taxon:2170100"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH28"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH28"
FT                   /protein_id="ABL67573.1"
FT                   /translation="SVSDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSD
FT                   GTMLAQRVPGVQKSGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKD
FT                   LGFKVEVSGELEFCSHIFKTPNLAIPVNENKMLYRLIHGYNPECGNFEVVQNYLNAAVS
FT                   VLHELRHDRELCLKLQEWLISDVTTKLN"
FT   CDS             762..>1368
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH29"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH29"
FT                   /protein_id="ABL67571.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGSARRGR
FT                   RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAX
FT                   XEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             787..1248
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH30"
FT                   /protein_id="ABL67572.1"
FT                   /translation="MAMVRADADRGSLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG
FT                   EEELQDLEEEAVARHSFSQRIHSRATPLEVSPSGRLYQSIRHSRMEYSRPXXNIRSQIV
FT                   SYSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRR"
XX
SQ   Sequence 1368 BP; 352 A; 343 C; 334 G; 337 T; 2 other;
     tcagtctccg attggatgct cgcggatgac atggaggtga gaaatcgcct aacaatcgac        60
     tgcaacgagc tcaccagaca ccttagggct gtttggcttc aaggcatatc aaactcggtt       120
     ttgtgcctgt cggatggaac catgttagct caacgagtac ccggcgtgca gaaaagtggt       180
     tcgtacaaca cttcgtccac aaactcacgc gtccgggtca tggctgccta tcactgtggc       240
     gcctcgtggg ctatcgctat gggtgatgat gccctggaag ctccagatac agacttgtca       300
     aaatataaag atctgggctt caaagtcgag gttagcggag agttggaatt ctgttcgcac       360
     attttcaaga cccctaacct cgccattccg gttaatgaaa acaaaatgtt gtaccgcttg       420
     atccacgggt acaatccgga atgtggcaat tttgaggtgg ttcaaaacta tctcaatgca       480
     gctgtctcag tgctgcatga gctccgacat gatcgggagc tttgcctaaa acttcaagag       540
     tggttgattt ctgacgtcac cacaaaacta aactgagcac aaaactagcc ggacaaacgt       600
     aagttgcaag taccggaagt caagtcttac acataagccc aacattgatt ttcatttgtt       660
     agcgggattt gcccttggat ttatatcctc aatccccatc tcagttgttg gtgtttatct       720
     agtctacctt aaggtttcga cccacattcg tgaaattgtt aatgagtacg gtcgtcctta       780
     gatccaatgg caatggttcg cgcagacgca gacagagggt cgctcggcga aggcctgctg       840
     caagaacgca gccagtggtt gtggtcactt ccaacggctc agccaggcgc ggaagacgcc       900
     gacgaccagt tggtcctcgg cgaggaagaa ctccaagatc tggaggagga agccgtggcg       960
     agacattcgt tttctcaaag gattcactcg cgggcaactc ctctggaagt atcaccttcg      1020
     ggccgtctct atcagagtat ccggcattcc agaatggagt actcaaggcc tancangaat      1080
     ataagatcac aaattgtgtc ttacagttcg tcagcgaggc ctcttccaca gcagccggct      1140
     ccatctctta tgagttggac ccccattgca aagcatcttc actcgcatca acgatcaata      1200
     agttcacaat caccaaaact ggtgcgcgga gcttcccagc gaagatgatc aacgggttag      1260
     agtggcaccc ctcagatgag gatcagttcc gaattcttta caaagggaac ggtgcttctt      1320
     ctgtggctgg gtcttttaag atcactctta gagtccagct acaaaacc                   1368
//