Dbfetch

Dbfetch

ID   DQ988096; SV 1; linear; genomic RNA; STD; VRL; 1368 BP.
XX
AC   DQ988096;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV06P1b03 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus RPV
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1368
RX   DOI; 10.1007/s00705-006-0913-x.
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1368
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the INSDC.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
DR   MD5; 46d186874aea796c6e9f378559bfd985.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1368
FT                   /organism="Cereal yellow dwarf virus RPV"
FT                   /host="Hordeum vulgare L. (barley)"
FT                   /isolate="RPV06P1b03"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2003"
FT                   /db_xref="taxon:2170100"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH25"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH25"
FT                   /protein_id="ABL67570.1"
FT                   /translation="SVSDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSD
FT                   GTMLAQRVPGVQKSGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKD
FT                   LGFKVEVSGELEFCSHIFKTPNLAIPVNENKMLYRLIHGYNPECGNFEVVQNYLNAAVS
FT                   VLHELRHDRELCLKLQEWLISDVTTKLN"
FT   CDS             762..>1368
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH26"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH26"
FT                   /protein_id="ABL67568.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGSARRGR
FT                   RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT                   HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             787..1248
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH27"
FT                   /protein_id="ABL67569.1"
FT                   /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG
FT                   EEELQDLEEEAVARHSFSQRIHSRATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV
FT                   SYSSSARPLPQQPAPSLMSWTPIARHLHSHQRSISSQSPKLVRGASQRR"
XX
SQ   Sequence 1368 BP; 354 A; 347 C; 330 G; 337 T; 0 other;
     tcagtctccg attggatgct cgcggatgac atggaggtga gaaatcgcct aacaatcgac        60
     tgcaacgagc tcaccagaca ccttagggct gtttggcttc aaggcatatc aaactcggtt       120
     ttatgcctgt cggacggaac catgttagct caacgagtac ccggcgtgca gaaaagtggc       180
     tcgtacaaca cttcgtccac aaactcacgc gtccgggtca tggctgccta tcactgtggc       240
     gcctcgtggg ctattgctat gggtgatgat gccctggaag ctccagatac agacttgtca       300
     aaatataaag atctgggctt caaagtcgag gttagcggag agttggagtt ctgttcgcac       360
     attttcaaga cccctaacct cgccattccg gttaatgaaa acaaaatgtt gtaccgcttg       420
     atccacgggt acaatccgga atgtggcaat tttgaggtag ttcaaaacta tctcaatgca       480
     gctgtctcag tgctgcatga gctccgacat gatcgggagc tttgtctaaa actccaagag       540
     tggttgattt ctgacgtcac cacaaaacta aactgagcac aaaactagcc ggacaaacgt       600
     aagttgcaag tgccggaagt caagtcttac acataagccc aacattgatt ttcatttgtt       660
     agcgggattt gcccttggat ttatatcctc aatccccatt tcagttgttg gtgtttatct       720
     agtctacctt aaggtttcga cccacattcg tgaaattgtt aatgagtacg gtcgtcctta       780
     gatccaatgg caatggttcg cgcagacgca gacagagagt cgctcggcga aggcctgctg       840
     caagaacgca gccagtggtt gtggtcactt ccaacggctc agccaggcgc ggaagacgcc       900
     gacgaccagt tggtcctcgg cgaggaagaa ctccaagatc tggaggagga agccgtggcg       960
     agacattcgt tttctcaaag gattcactcg cgggcaactc ctctggaagt atcaccttcg      1020
     ggccgtctct atcagagtat ccggcattcc agaatggagt actcaaggcc taccatgaat      1080
     ataagatcac aaattgtgtc ttacagttcg tcagcgaggc ctcttccaca gcagccggct      1140
     ccatctctta tgagttggac ccccattgca aggcatcttc actcgcatca acgatcaata      1200
     agttcacaat caccaaaact ggtgcgcgga gcttcccagc gaagatgatt aacgggttag      1260
     agtggcaccc ttcagacgaa gatcaattcc gtatcctcta taaagggaac ggtgcctctt      1320
     ccgtagctgg ttctttcaag atcacacttc gtgtacagct acaaaacc                   1368
//