ID   DQ988090; SV 1; linear; genomic RNA; STD; VRL; 1353 BP.
XX
AC   DQ988090;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV08F6b03 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus RPV
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1353
RX   DOI; 10.1007/s00705-006-0913-x.
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1353
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the INSDC.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
DR   MD5; f9510b4672c10f13ea2d422b31f9e0f4.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1353
FT                   /organism="Cereal yellow dwarf virus RPV"
FT                   /host="Hordeum vulgare L. (barley)"
FT                   /isolate="RPV08F6b03"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2002"
FT                   /db_xref="taxon:2170100"
FT   CDS             <1..561
FT                   /codon_start=1
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH08"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH08"
FT                   /protein_id="ABL67553.1"
FT                   /translation="MLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSDGTMLA
FT                   QRVPGVQKSGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKDLGFKV
FT                   EVSGELEFCSHIFKTPNLAIPVNENKMLYRLIHGYNPECGNFEVVQNYLNAAVSVLHEL
FT                   RHDRELCLKLQEWLISDVTTKLN"
FT   CDS             747..>1353
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH09"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH09"
FT                   /protein_id="ABL67551.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTSNGPARRGR
FT                   RRRPVGPRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAY
FT                   HEYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             772..1233
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH02"
FT                   /protein_id="ABL67552.1"
FT                   /translation="MAMVRADADRESLGEGLLQERSQWLWSLPTAQPGAEDADDQLVLG
FT                   EEELQDLEEEAVARHSFSQRIHSRATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIV
FT                   SYSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRR"
XX
SQ   Sequence 1353 BP; 352 A; 339 C; 328 G; 334 T; 0 other;
     atgctcgcgg atgacatgga ggtaagaaat cgcctaacaa tcgactgtaa cgagctcacc        60
     agacacctta gggctgtttg gcttcaaggc atatcaaact cggttttatg cctgtcggat       120
     ggaaccatgt tagctcaacg agtacccggc gtgcagaaaa gtggctcgta caacacttcg       180
     tccacaaact cacgcgtccg agtcatggct gcctatcact gtggcgcctc gtgggctatc       240
     gctatgggtg atgatgccct ggaagctcca gatacagact tgtcaaaata taaagatctg       300
     ggcttcaaag tcgaggttag cggagagttg gaattctgtt cgcacatttt caagacccct       360
     aacctcgcca ttccggttaa tgaaaacaaa atgttgtacc gcttgatcca cgggtacaat       420
     ccggaatgtg gcaattttga ggtggttcaa aactatctca atgcagctgt ctcagtgctg       480
     catgagctcc gacatgatcg ggagctttgc ctgaaacttc aagagtggtt gatttctgac       540
     gtcaccacaa aactaaactg agcacaaaac tagccggaca aacgtaagtt gcaagtgccg       600
     gaagtcaagt cttacacata agcccaacat tgattttcat ttgttagcgg gatttgccct       660
     tggatttata tcctcaatcc ccatttcagt tgttggtgtt tatctagtct accttaaggt       720
     ttcgacccac attcgtgaaa ttgttaatga gtacggtcgt ccttagatcc aatggcaatg       780
     gttcgcgcag acgcagacag agagtcgctc ggcgaaggcc tgctgcaaga acgcagccag       840
     tggttgtggt cacttccaac ggcccagcca ggcgcggaag acgccgacga ccagttggtc       900
     ctcggcgagg aagaactcca agatctggag gaggaagccg tggcgagaca ttcgttttct       960
     caaaggattc actcgcgggc aactcctctg gaagtatcac cttcgggccg tctctatcag      1020
     agtatccggc attccagaat ggagtactca aggcctacca tgaatataag atcacaaatt      1080
     gtgtcttaca gttcgtcagc gaggcctctt ccacagcagc cggctccatc tcttatgagt      1140
     tggaccccca ttgcaaagca tcttcactcg catcaacgat caataagttc acaatcacca      1200
     aaactggtgc gcggagcttc ccagcgaaga tgatcaacgg gttagagtgg cacccctcag      1260
     atgaggatca gttccgaatt ctttataaag ggaacggtgc ttcttctgtg gctgggtctt      1320
     ttaagatcac tcttagagtc cagctacaaa acc                                   1353
//